Clone Information

BLAST Search Result

Clone Name	rbasd24e20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MUC13_RAT (P97881) Mucin-13 precursor	30	2.4
2	DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associate...	30	3.2
3	RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large s...	30	3.2
4	TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined co...	29	4.1
5	TES_MOUSE (P47226) Testin (TES1/TES2)	29	4.1
6	TES_PIG (Q2QLE3) Testin	29	4.1
7	TES_PANTR (Q2QLF4) Testin	29	4.1
8	TES_OTOGA (Q2QLH9) Testin	29	4.1
9	TES_MICMU (Q2QL92) Testin	29	4.1
10	TES_HUMAN (Q9UGI8) Testin (TESS)	29	4.1
11	TES_HORSE (Q2QLB2) Testin	29	4.1
12	TES_CALMO (Q2QLC3) Testin	29	4.1
13	TES_CALJA (Q2QLG8) Testin	29	4.1
14	MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domai...	29	5.4
15	MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 11...	28	7.1
16	VATB_SCHPO (P31411) Vacuolar ATP synthase subunit B (EC 3.6.3.14...	28	9.2
17	VATB2_RAT (P62815) Vacuolar ATP synthase subunit B, brain isofor...	28	9.2
18	VATB2_PONPY (Q5R5V5) Vacuolar ATP synthase subunit B, brain isof...	28	9.2
19	VATB2_MOUSE (P62814) Vacuolar ATP synthase subunit B, brain isof...	28	9.2
20	VATB2_HUMAN (P21281) Vacuolar ATP synthase subunit B, brain isof...	28	9.2
21	VATB2_BOVIN (P31408) Vacuolar ATP synthase subunit B, brain isof...	28	9.2
22	RENT1_SCHPO (Q09820) Regulator of nonsense transcripts 1 homolog...	28	9.2
23	Y920_TREPA (O83890) Hypothetical protein TP0920	28	9.2
24	VATB_CHICK (P49712) Vacuolar ATP synthase subunit B (EC 3.6.3.14...	28	9.2
25	SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor	28	9.2
26	WNT5_DROME (P28466) Protein Wnt-5 precursor (dWnt-5) (dWnt-3)	28	9.2
27	RNFD_HAEIN (Q57288) Electron transport complex protein rnfD	28	9.2
28	DLL4_MOUSE (Q9JI71) Delta-like protein 4 precursor (Drosophila D...	28	9.2
29	VE6_PCPV1 (Q02270) Protein E6	28	9.2

>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 134 GFSSHSLCSSTRTDSGFSWCASNPCSVCACCLXQSRTHFCXLL 6
           G SS ++ SS+ T S    C SNPC   A C+    ++FC  L
Sbjct: 196 GASSSTVTSSSSTGSNDP-CNSNPCKSPASCVKLYDSYFCLCL 237

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>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 895

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 15  TKMSPTLXKATSTNRTWVRR-APGKPTVCTRTR-----TQTMG 125
           T  SP +   T T    VR   PGKPTV TRTR     T T+G
Sbjct: 341 TPTSPAIAPPTETMAPPVRDPVPGKPTVTTRTRGAIIQTPTLG 383

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>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 812

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +1

Query: 49  AQTEHGFDAHQENPLSVRVLEHRLWDEKP 135
           AQTE  ++ ++ +P+S  +L++ +WD+ P
Sbjct: 558 AQTEGPYETYEGSPVSKGILQYDMWDKVP 586

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>TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined colon cancer|
           antigen 3 homolog)
          Length = 1084

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 227 PPSIFVIPACTTCSRYLHSCIVFVIR*FGASGFSSHSLCSSTRTDSGFSW 78
           PP+     ACTT +  + SC          S  +SHS  +S  + SG+ W
Sbjct: 160 PPTSTASTACTTATTAITSC----------STSTSHSSTTSNSSSSGYDW 199

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>TES_MOUSE (P47226) Testin (TES1/TES2)|
          Length = 423

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 378 TYNNFSWHASTECFLCSCC 396

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>TES_PIG (Q2QLE3) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_PANTR (Q2QLF4) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_OTOGA (Q2QLH9) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_MICMU (Q2QL92) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_HUMAN (Q9UGI8) Testin (TESS)|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_HORSE (Q2QLB2) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_CALMO (Q2QLC3) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>TES_CALJA (Q2QLG8) Testin|
          Length = 421

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 98  TDSGFSWCASNPCSVCACC 42
           T + FSW AS  C +C+CC
Sbjct: 376 TYNNFSWHASTECFLCSCC 394

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>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2330

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 161 FVIR*FGASGFSSHSLCSSTRTDSGFSWCASNPCSVCACCLXQSRTH 21
           F +  + +S  +S+S C     D G  WC ++      C L Q R H
Sbjct: 379 FFLEPYRSSACTSYSSCLGCLADQGCGWCLNS----ATCHLRQGRAH 421

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>MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 114/A10)|
           (Lymphocyte antigen 64)
          Length = 573

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 137 SGFSSHSLCSSTRTDSGFSWCASNPCSVCACCLXQSRTHFCXLL 6
           SG +S S   S  +      C  NPC   A C+     HFC  L
Sbjct: 217 SGGASSSTVPSGGSTGPSDLCNPNPCKGTASCVKLHSKHFCLCL 260

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>VATB_SCHPO (P31411) Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B|
           subunit) (Vacuolar proton pump B subunit) (V-ATPase 57
           kDa subunit)
          Length = 503

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 142 YPEEMIQTGISSIDGLNSIARGQKI 166

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>VATB2_RAT (P62815) Vacuolar ATP synthase subunit B, brain isoform (EC|
           3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B
           isoform 2) (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKI 189

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>VATB2_PONPY (Q5R5V5) Vacuolar ATP synthase subunit B, brain isoform (EC|
           3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B
           isoform 2)
          Length = 511

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKI 189

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>VATB2_MOUSE (P62814) Vacuolar ATP synthase subunit B, brain isoform (EC|
           3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B
           isoform 2) (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKI 189

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>VATB2_HUMAN (P21281) Vacuolar ATP synthase subunit B, brain isoform (EC|
           3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B
           isoform 2) (Endomembrane proton pump 58 kDa subunit)
           (HO57)
          Length = 511

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKI 189

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>VATB2_BOVIN (P31408) Vacuolar ATP synthase subunit B, brain isoform (EC|
           3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B
           isoform 2) (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKI 189

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>RENT1_SCHPO (Q09820) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
           (ATP-dependent helicase SPAC16C9.06c)
          Length = 925

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 273 WKSNTFDRLPTALRL 229
           WKS +FDR+ TALRL
Sbjct: 337 WKSTSFDRMQTALRL 351

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>Y920_TREPA (O83890) Hypothetical protein TP0920|
          Length = 809

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 40  RQQAQTEHGFDAHQENPLSVRVLEHRLWDEKPDAP 144
           RQQA T+      +E+   VR L   +++EKP AP
Sbjct: 773 RQQAATQWNILVQKEDSDRVRALHALIFEEKPPAP 807

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>VATB_CHICK (P49712) Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B|
           subunit) (Vacuolar proton pump B subunit)
          Length = 453

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 YLEHVVQAGITKIDGGKSQCRGQTI 255
           Y E ++Q GI+ IDG  S  RGQ I
Sbjct: 106 YPEEMIQTGISAIDGMNSIARGQKI 130

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>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor|
          Length = 217

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +3

Query: 15  TKMSPT--LXKATSTNRTWVRRAPGKPTVCTRTRTQTMGRKT*CTKLPYYKYNATVKVPR 188
           T+  PT    K+TST  T  R  P KPT  + + T T  R    T         T   P 
Sbjct: 64  TRAPPTKPTCKSTSTTTTTTRAPPTKPTCKSTSTTTTTTRAPPTTTCKTSTTTTTTHKPT 123

Query: 189 TRGT 200
           T  T
Sbjct: 124 THST 127

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>WNT5_DROME (P28466) Protein Wnt-5 precursor (dWnt-5) (dWnt-3)|
          Length = 1004

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -2

Query: 200  CTTCSRYLHSCIVFVIR*FGASGFSSHSLCSSTRTDSGFSWCASNPCSVCACCLXQSRTH 21
            C   S  L SC +         G+++ ++  + R +  F WC    C VC   L +   H
Sbjct: 949  CHKNSSGLESCAILCC----GRGYNTKNIIVNERCNCKFHWCCQVKCEVCTKVLEE---H 1001

Query: 20   FC 15
             C
Sbjct: 1002 TC 1003

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>RNFD_HAEIN (Q57288) Electron transport complex protein rnfD|
          Length = 358

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 174 VKVPRTRGTGWDYKNRWWQVSV 239
           +K+P   G G D+   WWQ++V
Sbjct: 208 IKLPIFMGNGTDFAQGWWQINV 229

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>DLL4_MOUSE (Q9JI71) Delta-like protein 4 precursor (Drosophila Delta homolog|
           4)
          Length = 686

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 143 GASGFSSHSLCSST--RTDSGFSWCASNPCSVCACCLXQSRTHFC 15
           G  G++   L   T    + G S CASNPC     C  Q  ++ C
Sbjct: 305 GPKGYTCTCLPGYTGEHCELGLSKCASNPCRNGGSCKDQENSYHC 349

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>VE6_PCPV1 (Q02270) Protein E6|
          Length = 150

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -2

Query: 200 CTTCSRYLHSCIVFVIR*FGASGFSSHSLCSSTRTDSGFSWCASNPCSVCACCL 39
           C  C+  +HS  +  +  F     S+  + +    D    W  + P + CACCL
Sbjct: 17  CKECNLCMHSLQILCV--FCRKTLSTAEVYAFQYKDLNIVWQGNFPFAACACCL 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,435,437
Number of Sequences: 219361
Number of extensions: 1273132
Number of successful extensions: 3708
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3700
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result