ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX950186.10| Zebrafish DNA sequence from clone CH211-103O18 ... 42 1.5
2emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in l... 42 1.5
3gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B... 42 1.5
4emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in ... 42 1.5
5gb|AC116706.12| Mus musculus chromosome 1, clone RP23-37D15, com... 40 5.8
6gb|DQ465384.1| Oreochromis mossambicus clone SSH #509 mitochondr... 40 5.8
7emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on ch... 40 5.8
8emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 o... 40 5.8
9gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, compl... 40 5.8
10gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, comple... 40 5.8
11gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, com... 40 5.8
12emb|AL928789.4| Mouse DNA sequence from clone RP23-435F21 on chr... 40 5.8

>emb|BX950186.10| Zebrafish DNA sequence from clone CH211-103O18 in linkage group 15,
              complete sequence
          Length = 140307

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 294    atcttcccttttcagctcctt 314
              |||||||||||||||||||||
Sbjct: 137138 atcttcccttttcagctcctt 137118



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>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19,
             complete sequence
          Length = 147881

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 396   caagacaattgctttttcaat 416
             |||||||||||||||||||||
Sbjct: 75230 caagacaattgctttttcaat 75210



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>gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B23, complete sequence
          Length = 126010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   caaactaccttattacaaata 163
             |||||||||||||||||||||
Sbjct: 45639 caaactaccttattacaaata 45659



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>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete
              sequence
          Length = 255824

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 396    caagacaattgctttttcaat 416
              |||||||||||||||||||||
Sbjct: 246931 caagacaattgctttttcaat 246911



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>gb|AC116706.12| Mus musculus chromosome 1, clone RP23-37D15, complete sequence
          Length = 167357

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  atcttcccttttcagctcct 313
            ||||||||||||||||||||
Sbjct: 2214 atcttcccttttcagctcct 2195



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>gb|DQ465384.1| Oreochromis mossambicus clone SSH #509 mitochondrial isocitrate
           dehydrogenase 2-like mRNA, complete cds; nuclear gene
           for mitochondrial product
          Length = 1674

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 360 acgaagacagagttgaagagtttg 383
           |||||| |||||||||||||||||
Sbjct: 423 acgaagccagagttgaagagtttg 446



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>emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on chromosome 1 Contains the
             5' end of the SIL gene for TAL1 (SCL) interrupting locus,
             the 5' end of the  gene for UMP-CMP kinase (UMP-CMPK) and
             a CpG island, complete sequence
          Length = 68049

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   ttttgcctcaccttgtcatccctg 336
             ||||||||||||||||||| ||||
Sbjct: 54331 ttttgcctcaccttgtcattcctg 54354



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>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2
             Contains GSSs and STSs, complete sequence
          Length = 125698

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   gaacatcttatcttcatttt 355
             ||||||||||||||||||||
Sbjct: 71949 gaacatcttatcttcatttt 71968



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>gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, complete sequence
          Length = 169076

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    ttttctacgaagacagagtt 373
              ||||||||||||||||||||
Sbjct: 121247 ttttctacgaagacagagtt 121266



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>gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, complete sequence
          Length = 109840

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    ttttctacgaagacagagtt 373
              ||||||||||||||||||||
Sbjct: 101011 ttttctacgaagacagagtt 101030



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>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence
          Length = 200174

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   atcttcccttttcagctcct 313
             ||||||||||||||||||||
Sbjct: 34195 atcttcccttttcagctcct 34214



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>emb|AL928789.4| Mouse DNA sequence from clone RP23-435F21 on chromosome 2, complete
              sequence
          Length = 202887

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     acaagcacaaacagaacatg 64
              ||||||||||||||||||||
Sbjct: 112703 acaagcacaaacagaacatg 112684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,432,919
Number of Sequences: 3902068
Number of extensions: 5432919
Number of successful extensions: 81220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81201
Number of HSP's gapped (non-prelim): 19
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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