ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24e19 |
|---|---|
| Clone Library Name | barley_pub |
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 255 ACARFCNDGDVIQSVEA 205 ACARFCNDGDVIQSVEA Sbjct: 121 ACARFCNDGDVIQSVEA 137
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 17/17 (100%) Frame = -3 Query: 255 ACARFCNDGDVIQSVEA 205 ACARFCNDG+VIQSVEA Sbjct: 121 ACARFCNDGEVIQSVEA 137
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 17/17 (100%) Frame = -3 Query: 255 ACARFCNDGDVIQSVEA 205 ACARFCNDG+VIQSVEA Sbjct: 121 ACARFCNDGEVIQSVEA 137
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 36.6 bits (83), Expect = 0.017 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 255 ACARFCNDGDVIQSVEA 205 ACARFCNDG VIQSVEA Sbjct: 121 ACARFCNDGAVIQSVEA 137
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 36.6 bits (83), Expect = 0.017 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 255 ACARFCNDGDVIQSVEA 205 ACARFCNDG VIQSVEA Sbjct: 121 ACARFCNDGAVIQSVEA 137
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 31.6 bits (70), Expect = 0.56 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 240 CNDGDVIQSVEA*SCLLGHDFYGQGRFVIFCSTILIPSPDRSKCI 106 C D D + E CL GH +G F C T P+PD +C+ Sbjct: 1206 CQDVDECATTEP--CLGGHCVNTEGSFNCLCETGFQPAPDSGECV 1248
>DGTL1_BIFLO (Q8G572) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 475 Score = 30.8 bits (68), Expect = 0.96 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -3 Query: 183 DFYGQGRFVIFCSTILIPSPDRSKCIIL---VMYFCFFPRSNKSYHDESI 43 D YG G + S I+IP + + L +YF PR + +H E + Sbjct: 364 DTYGPGPLTRYSSNIVIPEDTNYEIVALKGIAVYFVMAPREREPFHQEEL 413
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -3 Query: 240 CNDGDVIQSVEA*SCLLGHDFYGQGRFVIFCSTILIPSPDRSKCI 106 C D D + + C+ GH +G F C T PSP+ +C+ Sbjct: 1216 CQDVDECATTDP--CVGGHCVNTEGSFNCLCETGFQPSPESGECV 1258
>SC11A_HUMAN (Q9UI33) Sodium channel protein type 11 alpha subunit (Sodium| channel protein type XI alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.9) (Sensory neuron sodium channel 2) (Peripheral nerve sodium channel 5) (hNaN) Length = 1791 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -1 Query: 119 EANVSS*LCISVFSLVPI--RVTTMNLFIPWL 30 EAN SS LC+ VF L+ + ++ +NLFI L Sbjct: 779 EANASSSLCVIVFILITVIGKLVVLNLFIALL 810
>KIF1B_RAT (O88658) Kinesin-like protein KIF1B| Length = 1816 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 10 CXATFILSQGINRFIVVTLIGTREKTEIH 96 C TF+L QGI R I VT+I + +E+H Sbjct: 1280 CQGTFLLHQGIQRRITVTII-HEKGSELH 1307
>KIF1B_MOUSE (Q60575) Kinesin-like protein KIF1B| Length = 1816 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 10 CXATFILSQGINRFIVVTLIGTREKTEIH 96 C TF+L QGI R I VT+I + +E+H Sbjct: 1280 CQGTFLLHQGIQRRITVTII-HEKGSELH 1307
>KIF1B_HUMAN (O60333) Kinesin-like protein KIF1B (Klp)| Length = 1816 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 10 CXATFILSQGINRFIVVTLIGTREKTEIH 96 C TF+L QGI R I VT+I + +E+H Sbjct: 1280 CQGTFLLHQGIQRRITVTII-HEKGSELH 1307
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +3 Query: 171 GHRNHAQEGMIRLQQTE*HHHHYRNGH 251 GH +H L Q+ HHHH+ + H Sbjct: 274 GHHHHHPHAHHPLSQSSGHHHHHHHHH 300
>OTX1_RAT (Q63410) Homeobox protein OTX1| Length = 355 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +3 Query: 171 GHRNHAQEGMIRLQQTE*HHHHYRNGH 251 GH +H L Q+ HHHH+ + H Sbjct: 274 GHHHHHPHAHHPLSQSSGHHHHHHHHH 300
>OTX1_MOUSE (P80205) Homeobox protein OTX1| Length = 355 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +3 Query: 171 GHRNHAQEGMIRLQQTE*HHHHYRNGH 251 GH +H L Q+ HHHH+ + H Sbjct: 274 GHHHHHPHAHHPLSQSSGHHHHHHHHH 300
>KIF1A_HUMAN (Q12756) Kinesin-like protein KIF1A (Axonal transporter of synaptic| vesicles) Length = 1690 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 10 CXATFILSQGINRFIVVTLI 69 C TF+L QGI R I VTL+ Sbjct: 1163 CMGTFLLHQGIQRRITVTLL 1182
>KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transporter of synaptic| vesicles) Length = 1695 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 10 CXATFILSQGINRFIVVTLI 69 C TF+L QGI R I VTL+ Sbjct: 1160 CMGTFLLHQGIQRRITVTLL 1179
>CAUP_DROME (P54269) Homeobox protein caupolican| Length = 693 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 177 RNHAQEGMIRLQQTE*HHHHYRNGH 251 + H Q+ + +LQQ + HHHH + H Sbjct: 501 QQHQQQQLQQLQQQQQHHHHPHHHH 525 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,470,088 Number of Sequences: 219361 Number of extensions: 611854 Number of successful extensions: 1607 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1545 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
