ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M62720.1|WHTUCP1A Wheat ubiquitin carrier protein (UBC1) mRNA... 482 e-133
2gb|BT017249.1| Zea mays clone EL01N0307D01.c mRNA sequence 145 1e-31
3ref|XM_476729.1| Oryza sativa (japonica cultivar-group), mRNA 115 9e-23
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 115 9e-23
5dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 115 9e-23
6dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 115 9e-23
7dbj|AK121382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
8dbj|AK070524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
9ref|XM_469945.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
10ref|XM_469944.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
11gb|BT018048.1| Zea mays clone EL01N0531D04.c mRNA sequence 111 1e-21
12gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 111 1e-21
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 111 1e-21
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
15dbj|AB079798.1| Oryza sativa (japonica cultivar-group) OsRad6 mR... 111 1e-21
16dbj|AK120251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
17dbj|AK067703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
18gb|AY104593.1| Zea mays PCO096181 mRNA sequence 111 1e-21
19gb|BT017437.1| Zea mays clone EL01N0404C11.c mRNA sequence 98 2e-17
20gb|AY103578.1| Zea mays PCO136701 mRNA sequence 96 8e-17
21emb|AJ879070.1| Capsicum chinense mRNA for ubiquitin-conjugating... 86 8e-14
22ref|NM_202096.1| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PR... 74 3e-10
23ref|NM_101307.2| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PR... 74 3e-10
24gb|BT016345.1| Zea mays clone Contig178 mRNA sequence 74 3e-10
25gb|BT013884.1| Lycopersicon esculentum clone 132865R, mRNA sequence 74 3e-10
26gb|AF332451.1| Arabidopsis thaliana putative E2, ubiquitin-conju... 74 3e-10
27gb|AY091330.1| Arabidopsis thaliana putative ubiquitin-conjugati... 74 3e-10
28gb|AY070074.1| Arabidopsis thaliana putative E2, ubiquitin-conju... 74 3e-10
29emb|BX816760.1|CNS0AD3H Arabidopsis thaliana Full-length cDNA Co... 74 3e-10
30gb|AY085783.1| Arabidopsis thaliana clone 18146 mRNA, complete s... 74 3e-10
31gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 74 3e-10
32gb|DQ027016.1| Arabidopsis thaliana ubiquitinating enzyme (At1g1... 74 3e-10
33gb|M62721.1|ATHUCP1B Arabidopsis thaliana ubiquitin carrier prot... 74 3e-10
34gb|L19351.1|ATHUBIQUA Arabidopsis thaliana 16kDa ubiquitin conju... 74 3e-10
35emb|BX817066.1|CNS0AD3L Arabidopsis thaliana Full-length cDNA Co... 70 5e-09
36dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone... 66 7e-08
37gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
38gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete s... 64 3e-07
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
40dbj|AK112003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
41dbj|AK111549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
42gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
43gb|L06967.1|ALFUBIQUIT Medicago sativa ubiquitin carrier protein... 64 3e-07
44gb|DQ200366.1| Solanum tuberosum clone 055E08 ubiquitin-conjugat... 62 1e-06
45gb|AY389584.1| Hyacinthus orientalis ubiquitin-conjugating enzym... 60 5e-06
46dbj|AB026056.1| Nicotiana tabacum Ntubc2 mRNA for ubiquitin-conj... 58 2e-05
47emb|BX814055.1|CNS0ADOD Arabidopsis thaliana Full-length cDNA Co... 56 7e-05
48emb|AJ843121.1| Plantago major mRNA for Ubiquitin-conjugating en... 52 0.001
49gb|AF262934.1|AF262934 Avicennia marina ubiquitin conjugating pr... 50 0.004
50dbj|AB026055.1| Nicotiana tabacum Ntubc1 mRNA for ubiquitin-conj... 50 0.004
51ref|NM_126331.2| Arabidopsis thaliana ATUBC2; ubiquitin conjugat... 44 0.27
52emb|Y13031.1|ATUBC2 A.thaliana mRNA for ubiquitin conjugating en... 44 0.27
53gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map... 44 0.27
54gb|AY072479.1| Arabidopsis thaliana putative ubiquitin-conjugati... 44 0.27
55gb|AF370558.1|AF370558 Arabidopsis thaliana putative ubiquitin-c... 44 0.27
56gb|DQ027017.1| Arabidopsis thaliana ubiquitinating enzyme (At2g0... 44 0.27
57gb|L19353.1|ATHUBIQUC Arabidopsis thaliana 16kDa ubiquitin conju... 44 0.27
58gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosom... 42 1.1
59emb|AL033532.36|HS745I14 Human DNA sequence from clone RP4-745I1... 42 1.1
60gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome... 40 4.3
61gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, comp... 40 4.3
62ref|XM_963700.1| PREDICTED: Tribolium castaneum similar to CG335... 40 4.3
63gb|AY660750.1| Populus tomentosa ubiquitin carrier protein mRNA,... 40 4.3
64gb|AC104453.2| Homo sapiens chromosome 1 clone RP4-672J20, compl... 40 4.3
65gb|AC159307.2| Mus musculus BAC clone RP23-169J21 from chromosom... 40 4.3
66dbj|AB189474.1| Staphylococcus warneri gehWC gene for lipase, co... 40 4.3
67gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287... 40 4.3
68gb|AC101510.12| Mus musculus chromosome 3, clone RP23-190B7, com... 40 4.3
69gb|AC024902.54| Homo sapiens 12 BAC RP11-684O24 (Roswell Park Ca... 40 4.3
70dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 4.3
71gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 4.3 
>gb|M62720.1|WHTUCP1A Wheat ubiquitin carrier protein (UBC1) mRNA, complete cds
          Length = 773

 Score =  482 bits (243), Expect = e-133
 Identities = 295/311 (94%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  ctttacaatggactagcatgccttagttcaccaaacaggtcacacgcactgaaaaaacaa 72
           ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 757 ctttacaatgg-ctaacatgccttagttcaccaaacaggtcacacacactgaaaaaacaa 699

                                                                       
Query: 73  caggagatcaagcacagggacacaacggccatgggttttttaatgttttagttcggtggt 132
           ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct: 698 caggagatcaagcacagggacacaacggccatggggttttcaatgttttagttcggcggt 639

                                                                       
Query: 133 acagaccagcaaagccagaaatggagacgttccgggcatcgcttattgcaggacctggtg 192
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||  
Sbjct: 638 acagaccagcaaagccagaaatggagacgttccgggcgttgcttattgcaggatctggca 579

                                                                       
Query: 193 acgctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcg 252
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 578 acgctagtccgctgtccagctctgctccacgacctcacgaaccttgcggttgtactcgcg 519

                                                                       
Query: 253 cttgttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           |||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 518 cttgttctcgctgtacattctggctgcttcagagttcgcaggagaattcgggttcgggtc 459

                      
Query: 313 gcacagcaggg 323
           |||||||||||
Sbjct: 458 gcacagcaggg 448
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>gb|BT017249.1| Zea mays clone EL01N0307D01.c mRNA sequence
          Length = 863

 Score =  145 bits (73), Expect = 1e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                       
Query: 203 gctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgttctcg 262
           |||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 625 gctgtccagctctgctccacaacctcgcgaactttgcggttgtactcgcgcttgttctcg 566

                                                                       
Query: 263 ctgtacattctggctgcttcggagttggctggagaattcggattcgggtcgcacagcagg 322
           ||| ||||||| |||||||| |||||||| |||||||| || || ||||| |||||||||
Sbjct: 565 ctgaacattctcgctgcttcagagttggcaggagaatttgggtttgggtcacacagcagg 506

            
Query: 323 g 323
           |
Sbjct: 505 g 505
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>ref|XM_476729.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 459

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 459 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 400

                                                     
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggaga 297
           |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 399 gttctcactaaacagtctggcagcttctgagtttgctggaga 358
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                           
Query: 196     ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
               |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 3621798 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 3621857

                                                         
Query: 256     gttctcgctgtacattctggctgcttcggagttggctggaga 297
               |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 3621858 gttctcactaaacagtctggcagcttctgagtttgctggaga 3621899
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1641_C04
          Length = 134367

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 196   ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
             |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 91115 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 91174

                                                       
Query: 256   gttctcgctgtacattctggctgcttcggagttggctggaga 297
             |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 91175 gttctcactaaacagtctggcagcttctgagtttgctggaga 91216
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0039H02
          Length = 169162

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 196    ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
              |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 159748 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 159807

                                                        
Query: 256    gttctcgctgtacattctggctgcttcggagttggctggaga 297
              |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 159808 gttctcactaaacagtctggcagcttctgagtttgctggaga 159849
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>dbj|AK121382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H21, full
           insert sequence
          Length = 895

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 614 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 555

                                                     
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggaga 297
           |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 554 gttctcactaaacagtctggcagcttctgagtttgctggaga 513
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>dbj|AK070524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055G02, full
           insert sequence
          Length = 4109

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 570 ctagtcagctgtccagctctgctccacgatctcacgaaccttgcggttgtactctcgctt 511

                                                     
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggaga 297
           |||||| ||  ||| |||||| ||||| ||||| ||||||||
Sbjct: 510 gttctcactaaacagtctggcagcttctgagtttgctggaga 469
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>ref|XM_469945.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1025

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 639 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 580

                                           
Query: 257 ttctcgctgtacattctggctgcttcggagtt 288
           ||||||||| ||| ||||||||||||||||||
Sbjct: 579 ttctcgctgaacagtctggctgcttcggagtt 548
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>ref|XM_469944.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3633

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                        
Query: 197  tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
            ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 3506 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 3565

                                            
Query: 257  ttctcgctgtacattctggctgcttcggagtt 288
            ||||||||| ||| ||||||||||||||||||
Sbjct: 3566 ttctcgctgaacagtctggctgcttcggagtt 3597
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>gb|BT018048.1| Zea mays clone EL01N0531D04.c mRNA sequence
          Length = 817

 Score =  111 bits (56), Expect = 1e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           ||||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||
Sbjct: 588 agtccgccgtccagctctgctccacgacctcccgaactttgcggttgtactctcgcttgt 529

                                                                       
Query: 258 tctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtcgcaca 317
           |||||||| |||| | ||| ||||| ||||| || || |||||||| || || |||||||
Sbjct: 528 tctcgctgaacatgcgggcggcttcagagttagcgggcgaattcgggtttggatcgcaca 469
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                          
Query: 197    tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
              ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 117274 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 117215

                                              
Query: 257    ttctcgctgtacattctggctgcttcggagtt 288
              ||||||||| ||| ||||||||||||||||||
Sbjct: 117214 ttctcgctgaacagtctggctgcttcggagtt 117183
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                            
Query: 197      tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
                ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 32626633 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 32626692

                                                
Query: 257      ttctcgctgtacattctggctgcttcggagtt 288
                ||||||||| ||| ||||||||||||||||||
Sbjct: 32626693 ttctcgctgaacagtctggctgcttcggagtt 32626724
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                            
Query: 197      tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
                ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 32717143 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 32717202

                                                
Query: 257      ttctcgctgtacattctggctgcttcggagtt 288
                ||||||||| ||| ||||||||||||||||||
Sbjct: 32717203 ttctcgctgaacagtctggctgcttcggagtt 32717234
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>dbj|AB079798.1| Oryza sativa (japonica cultivar-group) OsRad6 mRNA for Rad6,
           complete cds
          Length = 764

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 632 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 573

                                           
Query: 257 ttctcgctgtacattctggctgcttcggagtt 288
           ||||||||| ||| ||||||||||||||||||
Sbjct: 572 ttctcgctgaacagtctggctgcttcggagtt 541
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>dbj|AK120251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045G10, full
           insert sequence
          Length = 847

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 639 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 580

                                           
Query: 257 ttctcgctgtacattctggctgcttcggagtt 288
           ||||||||| ||| ||||||||||||||||||
Sbjct: 579 ttctcgctgaacagtctggctgcttcggagtt 548
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>dbj|AK067703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116J09, full
           insert sequence
          Length = 882

 Score =  111 bits (56), Expect = 1e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||||||||| | ||| || || |||||||||||||||||||||
Sbjct: 625 tagtcggccgtccagctctgctccacaatctcgcggactttgcggttgtactcgcgcttg 566

                                           
Query: 257 ttctcgctgtacattctggctgcttcggagtt 288
           ||||||||| ||| ||||||||||||||||||
Sbjct: 565 ttctcgctgaacagtctggctgcttcggagtt 534
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>gb|AY104593.1| Zea mays PCO096181 mRNA sequence
          Length = 1003

 Score =  111 bits (56), Expect = 1e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           ||||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||
Sbjct: 674 agtccgccgtccagctctgctccacgacctcccgaactttgcggttgtactctcgcttgt 615

                                                                       
Query: 258 tctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtcgcaca 317
           |||||||| |||| | ||| ||||| ||||| || || |||||||| || || |||||||
Sbjct: 614 tctcgctgaacatgcgggcggcttcagagttagcgggcgaattcgggtttggatcgcaca 555
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>gb|BT017437.1| Zea mays clone EL01N0404C11.c mRNA sequence
          Length = 425

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| | |||||||||||||||||||| |||||| || |||||| ||||||| |||||
Sbjct: 191 ctagtcgggtgtccagctctgctccacgatctcacggactttgcgggtgtactcccgctt 132

                                            
Query: 256 gttctcgctgtacattctggctgcttcggagtt 288
           |||||||||| ||| ||| |||||||| |||||
Sbjct: 131 gttctcgctgaacagtcttgctgcttctgagtt 99
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>gb|AY103578.1| Zea mays PCO136701 mRNA sequence
          Length = 1179

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| |||||||||||||||||||| | ||| || || |||||||||||||| |||||
Sbjct: 801 ctagtcggctgtccagctctgctccacaatctcgcggactttgcggttgtactcccgctt 742

                                                                       
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtcgca 315
           |||||||||| ||| ||| || ||||| ||||| || || || ||||| || || || ||
Sbjct: 741 gttctcgctgaacagtcttgcggcttctgagtttgcaggggagttcgggtttggatcaca 682

                   
Query: 316 cagcaggg 323
           ||||||||
Sbjct: 681 cagcaggg 674
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>emb|AJ879070.1| Capsicum chinense mRNA for ubiquitin-conjugating enzyme
          Length = 957

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           |||| ||||||||||||||||| || | |||||||||||| | |||||||||||||||||
Sbjct: 671 agtcagctgtccagctctgctcaacaatctcacgcaccttcctgttgtactcgcgcttgt 612

                  
Query: 258 tctcgct 264
           |||||||
Sbjct: 611 tctcgct 605
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>ref|NM_202096.1| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin
           conjugating enzyme/ ubiquitin-like activating enzyme
           AT1G14400 (UBC1) transcript variant AT1G14400.2 mRNA,
           complete cds
          Length = 819

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 551 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 492

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 491 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 435
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>ref|NM_101307.2| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin
           conjugating enzyme/ ubiquitin-like activating enzyme
           AT1G14400 (UBC1) transcript variant AT1G14400.1 mRNA,
           complete cds
          Length = 948

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 680 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 621

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 620 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 564
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>gb|BT016345.1| Zea mays clone Contig178 mRNA sequence
          Length = 965

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| |||||||||||||||||||| | ||| || || ||||||| | |||| |||||
Sbjct: 356 ctagtcggctgtccagctctgctccacaatctcgcggactttgcggtggaactcccgctt 415

                                            
Query: 256 gttctcgctgtacattctggctgcttcggagtt 288
           |||||||||| ||| ||| || ||||| |||||
Sbjct: 416 gttctcgctgaacagtcttgcggcttctgagtt 448
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>gb|BT013884.1| Lycopersicon esculentum clone 132865R, mRNA sequence
          Length = 794

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           ||||||| |||||||||||||| || | |||||||||||| | ||||||||| |||||||
Sbjct: 517 agtccgccgtccagctctgctcaacaatctcacgcaccttcctgttgtactcacgcttgt 458

                        
Query: 258 tctcgctgtacat 270
           |||| ||| ||||
Sbjct: 457 tctcactgaacat 445
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>gb|AF332451.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme 1
           (At1g14400) mRNA, complete cds
          Length = 459

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 459 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 400

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 399 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 343
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>gb|AY091330.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme 1 (UBC1)
           (At1g14400) mRNA, complete cds
          Length = 490

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 459 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 400

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 399 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 343
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>gb|AY070074.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC1
           (At1g14400) mRNA, complete cds
          Length = 839

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 632 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 573

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 572 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 516
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>emb|BX816760.1|CNS0AD3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH67ZB10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 847

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 605 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 546

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 545 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 489
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>gb|AY085783.1| Arabidopsis thaliana clone 18146 mRNA, complete sequence
          Length = 838

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 680 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 621

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 620 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 564
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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                         
Query: 196   ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
             |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 58373 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 58432

                                                                      
Query: 256   gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
             | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 58433 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 58489
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>gb|DQ027016.1| Arabidopsis thaliana ubiquitinating enzyme (At1g14400) mRNA,
           complete cds
          Length = 459

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 459 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 400

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 399 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 343
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>gb|M62721.1|ATHUCP1B Arabidopsis thaliana ubiquitin carrier protein (UBC1) mRNA,
           complete cds
          Length = 749

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 196 ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
           |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 558 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 499

                                                                    
Query: 256 gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 498 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 442
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>gb|L19351.1|ATHUBIQUA Arabidopsis thaliana 16kDa ubiquitin conjugating enzyme (UBC1) gene,
            complete cds
          Length = 1887

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 196  ctagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgctt 255
            |||||| || |||||||| ||||| || || ||||||||  | | |||||||||||||||
Sbjct: 1709 ctagtcagcagtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgctt 1650

                                                                     
Query: 256  gttctcgctgtacattctggctgcttcggagttggctggagaattcggattcgggtc 312
            | | ||||||||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 1649 gctttcgctgtacatccgagcagcttccgagtttgcaggagaattcggattagggtc 1593
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>emb|BX817066.1|CNS0AD3L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH83ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 817

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                       
Query: 206 gtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgttctcgctg 265
           |||||||| ||||| || || ||||||||  | | |||||||||||||||| | ||||||
Sbjct: 642 gtccagctttgctcaacaacatcacgcactctcctgttgtactcgcgcttgctttcgctg 583

                                                          
Query: 266 tacattctggctgcttcggagttggctggagaattcggattcgggtc 312
           ||||| |  || ||||| ||||| || |||||||||||||| |||||
Sbjct: 582 tacatccgagcagcttccgagtttgcaggagaattcggattagggtc 536
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>dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT42E10, TM0123,
             complete sequence
          Length = 79601

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                         
Query: 197   tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
             ||||| |||||||| ||||||||||| |  || | |||  ||||||||||||| ||||||
Sbjct: 11167 tagtctgctgtccaactctgctccacaatttccctcactctgcggttgtactcacgcttg 11226

                                                      
Query: 257   ttctcgctgtacattctggctgcttcggagttggctggaga 297
             ||||| ||  ||||||  |||||||||||||| || |||||
Sbjct: 11227 ttctcactaaacattcgagctgcttcggagtttgcaggaga 11267
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>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12,
            complete sequence
          Length = 187523

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 198  agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
            ||||||| ||||||||||||||||| | |||||| || || |||||||| || |||||||
Sbjct: 1543 agtccgcggtccagctctgctccactatctcacgaacttttcggttgtattcccgcttgt 1484

                
Query: 258  tctc 261
            ||||
Sbjct: 1483 tctc 1480
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>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
          Length = 130999

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                          
Query: 197    tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
              ||||| |||||||| ||||||||||| || || |||||  | || |||||||| ||||||
Sbjct: 100857 tagtcagctgtccaactctgctccacaacttcccgcactcttcgattgtactcacgcttg 100798

                                                          
Query: 257    ttctcgctgtacattctggctgcttcggagttggctggagaatt 300
              ||||| ||| ||||||  || ||||| ||||| || ||||||||
Sbjct: 100797 ttctcactgaacattcgagccgcttcagagtttgcaggagaatt 100754
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                           
Query: 198     agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
               ||||||| ||||||||||||||||| | |||||| || || |||||||| || |||||||
Sbjct: 4906958 agtccgcggtccagctctgctccactatctcacgaacttttcggttgtattcccgcttgt 4906899

                   
Query: 258     tctc 261
               ||||
Sbjct: 4906898 tctc 4906895
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>dbj|AK112003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F01, full
           insert sequence
          Length = 947

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           ||||||| ||||||||||||||||| | |||||| || || |||||||| || |||||||
Sbjct: 677 agtccgcggtccagctctgctccactatctcacgaacttttcggttgtattcccgcttgt 618

               
Query: 258 tctc 261
           ||||
Sbjct: 617 tctc 614
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>dbj|AK111549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057C14, full
            insert sequence
          Length = 2920

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 198  agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
            ||||||| ||||||||||||||||| | |||||| || || |||||||| || |||||||
Sbjct: 2663 agtccgcggtccagctctgctccactatctcacgaacttttcggttgtattcccgcttgt 2604

                
Query: 258  tctc 261
            ||||
Sbjct: 2603 tctc 2600
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
              complete sequence
          Length = 187956

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 198    agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
              ||||||| ||||||||||||||||| | |||||| || || |||||||| || |||||||
Sbjct: 179366 agtccgcggtccagctctgctccactatctcacgaacttttcggttgtattcccgcttgt 179307

                  
Query: 258    tctc 261
              ||||
Sbjct: 179306 tctc 179303
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>gb|L06967.1|ALFUBIQUIT Medicago sativa ubiquitin carrier protein mRNA, complete cds
          Length = 910

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| |||||||| ||||||||||| || || |||||  | || |||||||| ||||||
Sbjct: 582 tagtcagctgtccaactctgctccacaacttcccgcactctacgattgtactcacgcttg 523

                                                       
Query: 257 ttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           ||||| ||| ||||||  || ||||| ||||| || ||||||||
Sbjct: 522 ttctcactgaacattcgagccgcttcagagtttgcaggagaatt 479
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>gb|DQ200366.1| Solanum tuberosum clone 055E08 ubiquitin-conjugating enzyme-like
           protein mRNA, complete cds
          Length = 807

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           |||| ||||||||||| ||||| || |  ||||||||||| | |||||| ||||||||||
Sbjct: 532 agtctgctgtccagctttgctcaactatttcacgcaccttcctgttgtagtcgcgcttgt 473

                  
Query: 258 tctcgct 264
           |||||||
Sbjct: 472 tctcgct 466
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>gb|AY389584.1| Hyacinthus orientalis ubiquitin-conjugating enzyme (UBC) mRNA,
           partial cds
          Length = 691

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||| ||||| | ||| || ||| | ||||||||||| ||||||
Sbjct: 448 tagtcagccgtccagctctgttccactatctctcggacccttcggttgtactcacgcttg 389

                         
Query: 257 ttctcgctgtacat 270
           ||||||||| ||||
Sbjct: 388 ttctcgctgaacat 375
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>dbj|AB026056.1| Nicotiana tabacum Ntubc2 mRNA for ubiquitin-conjugating enzyme
           (E2), complete cds
          Length = 784

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           |||| |||||||||||||| || || | ||| |||||||| | |||||| ||||||||||
Sbjct: 541 agtctgctgtccagctctgttcaacaatctcgcgcaccttcctgttgtattcgcgcttgt 482

                        
Query: 258 tctcgctgtacat 270
           |||| ||| ||||
Sbjct: 481 tctcactgaacat 469
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>emb|BX814055.1|CNS0ADOD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB54ZE09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 804

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                       
Query: 206 gtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgttctcgctg 265
           |||||||| ||||| || || ||||||||  | | || ||||||||||||| | ||||||
Sbjct: 600 gtccagctttgctcaacaacatcacgcactctcctgtggtactcgcgcttgctttcgctg 541

                                                   
Query: 266 tacattctggctgcttcggagttggctggagaattcggat 305
           ||||| |  || ||||| ||||| || |||||||||||||
Sbjct: 540 tacatccgagcagcttccgagtttgcaggagaattcggat 501
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>emb|AJ843121.1| Plantago major mRNA for Ubiquitin-conjugating enzyme (ubc2 gene)
          Length = 858

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| |||||||| || |||||||| | |||||||||||| | |||||| || ||||||
Sbjct: 598 tagtcggctgtccaactttgctccacaatctcacgcaccttcctgttgtaatcacgcttg 539

             
Query: 257 tt 258
           ||
Sbjct: 538 tt 537
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>gb|AF262934.1|AF262934 Avicennia marina ubiquitin conjugating protein (UBC) mRNA, complete
           cds
          Length = 850

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgcggttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggag 296
           |||| ||||| |||||||||||||| ||| |||| |  || ||||| || || || ||||
Sbjct: 477 tgcgattgtattcgcgcttgttctcactgaacatccgagcagcttcagaatttgcaggag 418

                                
Query: 297 aattcggattcgggtcgcaca 317
           |||| ||||||||||| ||||
Sbjct: 417 aatttggattcgggtcacaca 397
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>dbj|AB026055.1| Nicotiana tabacum Ntubc1 mRNA for ubiquitin-conjugating enzyme
           (E2), complete cds
          Length = 809

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 198 agtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttgt 257
           |||| |||||||||||||| || || | ||| |||||||| | |||||| || |||||||
Sbjct: 543 agtctgctgtccagctctgttcaacaatctcgcgcaccttcctgttgtattcacgcttgt 484

                        
Query: 258 tctcgctgtacat 270
           |||| ||| ||||
Sbjct: 483 tctcactgaacat 471
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>ref|NM_126331.2| Arabidopsis thaliana ATUBC2; ubiquitin conjugating enzyme AT2G02760
           (ATUBC2) mRNA, complete cds
          Length = 860

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 593 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 534

                 
Query: 301 cggatt 306
           ||||||
Sbjct: 533 cggatt 528
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>emb|Y13031.1|ATUBC2 A.thaliana mRNA for ubiquitin conjugating enzyme UBC2
          Length = 824

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 539 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 480

                 
Query: 301 cggatt 306
           ||||||
Sbjct: 479 cggatt 474
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>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete
             sequence
          Length = 81004

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 241   gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
             |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 52402 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 52461

                   
Query: 301   cggatt 306
             ||||||
Sbjct: 52462 cggatt 52467
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>gb|AY072479.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
           (At2g02760; T20F6.10) mRNA, complete cds
          Length = 538

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 414 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 355

                 
Query: 301 cggatt 306
           ||||||
Sbjct: 354 cggatt 349
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>gb|AF370558.1|AF370558 Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
           (At2g02760; T20F6.10) mRNA, complete cds
          Length = 830

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 563 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 504

                 
Query: 301 cggatt 306
           ||||||
Sbjct: 503 cggatt 498
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>gb|DQ027017.1| Arabidopsis thaliana ubiquitinating enzyme (At2g02760) mRNA,
           complete cds
          Length = 459

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 414 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 355

                 
Query: 301 cggatt 306
           ||||||
Sbjct: 354 cggatt 349
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>gb|L19353.1|ATHUBIQUC Arabidopsis thaliana 16kDa ubiquitin conjugating enzyme (UBC2) gene,
            complete cds
          Length = 2282

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 241  gttgtactcgcgcttgttctcgctgtacattctggctgcttcggagttggctggagaatt 300
            |||||||||||||||| | || ||| ||||||  || ||||| || || || ||||||||
Sbjct: 1562 gttgtactcgcgcttgctttcactgaacattcgtgcagcttccgaatttgcaggagaatt 1503

                  
Query: 301  cggatt 306
            ||||||
Sbjct: 1502 cggatt 1497
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>gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosome 5, complete sequence
          Length = 203685

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 142    caaagccagaaatggagacgt 162
              |||||||||||||||||||||
Sbjct: 116919 caaagccagaaatggagacgt 116939
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>emb|AL033532.36|HS745I14 Human DNA sequence from clone RP4-745I14 on chromosome 1q23.1-24.3
             Contains the 3' end of a novel gene, the GPR161 gene for G
             protein-coupled receptor 161 and one CpG island, complete
             sequence
          Length = 81631

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 107   gttttttaatgttttagttcggtggtaca 135
             |||||||||||||| ||||| ||||||||
Sbjct: 42823 gttttttaatgtttaagttcagtggtaca 42795
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>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete sequence
          Length = 157332

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   ccagctctgctccacgacctcacg 231
             |||||||||| |||||||||||||
Sbjct: 79760 ccagctctgcaccacgacctcacg 79783
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>gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, complete sequence
          Length = 205345

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    aaaaacaacaggagatcaag 84
             ||||||||||||||||||||
Sbjct: 84604 aaaaacaacaggagatcaag 84585
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>ref|XM_963700.1| PREDICTED: Tribolium castaneum similar to CG33531-PA (LOC657229),
           mRNA
          Length = 2715

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 aatggagacgttccgggcat 171
           ||||||||||||||||||||
Sbjct: 981 aatggagacgttccgggcat 962
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>gb|AY660750.1| Populus tomentosa ubiquitin carrier protein mRNA, complete cds
          Length = 700

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                       
Query: 197 tagtccgctgtccagctctgctccacgacctcacgcaccttgcggttgtactcgcgcttg 256
           ||||| || ||||||||||||||||| |  ||||| ||  |||| ||||| || ||||| 
Sbjct: 652 tagtcagcagtccagctctgctccacaatttcacgaactctgcgattgtattcccgctta 593

                                                       
Query: 257 ttctcgctgtacattctggctgcttcggagttggctggagaatt 300
           ||||| ||| |||| |  || ||||| ||||| ||||| |||||
Sbjct: 592 ttctcactgaacatgcgagcggcttcagagtttgctggggaatt 549
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>gb|AC104453.2| Homo sapiens chromosome 1 clone RP4-672J20, complete sequence
          Length = 112662

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   cacacgcactgaaaaaacaa 72
            ||||||||||||||||||||
Sbjct: 9927 cacacgcactgaaaaaacaa 9908
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>gb|AC159307.2| Mus musculus BAC clone RP23-169J21 from chromosome 12, complete
             sequence
          Length = 190562

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   gttttttaatgttttagttc 126
             ||||||||||||||||||||
Sbjct: 80826 gttttttaatgttttagttc 80807
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>dbj|AB189474.1| Staphylococcus warneri gehWC gene for lipase, complete cds
          Length = 2740

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  gaaaaaacaacaggagatcaagca 86
           ||||||||||||| ||||||||||
Sbjct: 845 gaaaaaacaacagaagatcaagca 868
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>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence
          Length = 175977

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     cacacgcactgaaaaaacaa 72
              ||||||||||||||||||||
Sbjct: 111042 cacacgcactgaaaaaacaa 111023
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>gb|AC101510.12| Mus musculus chromosome 3, clone RP23-190B7, complete sequence
          Length = 235744

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aaaaacaacaggagatcaag 84
             ||||||||||||||||||||
Sbjct: 52033 aaaaacaacaggagatcaag 52052
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>gb|AC024902.54| Homo sapiens 12 BAC RP11-684O24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167113

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      atataagaatgctttacaat 21
              ||||||||||||||||||||
Sbjct: 145982 atataagaatgctttacaat 146001
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     caccttgcggttgtactcgc 251
               ||||||||||||||||||||
Sbjct: 1602897 caccttgcggttgtactcgc 1602878
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 234     ccttgcggttgtactcgcgc 253
               ||||||||||||||||||||
Sbjct: 1602437 ccttgcggttgtactcgcgc 1602418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,762,176
Number of Sequences: 3902068
Number of extensions: 2762176
Number of successful extensions: 55485
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55329
Number of HSP's gapped (non-prelim): 155
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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