ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24e14 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 72.0 bits (175), Expect = 1e-12 Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Frame = -2 Query: 481 SAPVEKNV------VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFV 320 SAPVE+N +FVGNL++ V S L +LF S V+ VEVI+ T R S G+GFV Sbjct: 87 SAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGR-SRGFGFV 145 Query: 319 SFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 + S+ E EAA FNG E GR + V PK+ +S Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREES 184 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/86 (38%), Positives = 47/86 (54%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N ++VGNL+W V L LF V VI+ + R S G+GFV+ SS +E + AI Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR-SKGFGFVTLSSSQEVQKAI 315 Query: 283 STFNGKELMGRSINVMFKEDTPKKNK 206 ++ NG +L GR I V E P + + Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPRGQ 341
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 68.9 bits (167), Expect = 1e-11 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAK-PKKKQPAVPSAPVEKNV---------VFVGNLTWR 431 A A++ + S + RT+KV+F + P+ + V SA + ++V NL+W Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 227 Query: 430 VRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGR 251 + S+ LR+ FA PG S +VI+ ++ R S G+GF++FSS E +A+ T N EL GR Sbjct: 228 LTSQGLRDAFADQPGFMSAKVIYDRSSGR-SRGFGFITFSSAEAMNSALDTMNEVELEGR 286 Query: 250 SINV 239 + + Sbjct: 287 PLRL 290 Score = 66.2 bits (160), Expect = 6e-11 Identities = 36/93 (38%), Positives = 56/93 (60%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 ++K+ V S VE ++VGNL + + S L E+FA V +VE+++ T R S G+ Sbjct: 100 EEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDR-SRGFA 158 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 227 FV+ S EEA+ AI F+G ++ GR++ V F E Sbjct: 159 FVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 67.4 bits (163), Expect = 3e-11 Identities = 40/85 (47%), Positives = 49/85 (57%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL + S L ELF V+ VEVI+ T R S G+GFV+ SSKEE EAA Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGR-SRGFGFVTMSSKEEVEAACQQ 147 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 FNG EL GR++ V K+ S Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENS 172 Score = 58.2 bits (139), Expect = 2e-08 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 8/131 (6%) Frame = -2 Query: 574 SALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEK--------NVVFVGNLTWRVRSR 419 +A + N L+ R ++V+ P +K+ + N V+VGNL W V Sbjct: 143 AACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 202 Query: 418 HLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 L LF+ V +V++ + R S G+GFV++SS EE AI + +G +L GR+I V Sbjct: 203 ALETLFSEQGKVVDAKVVYDRDSGR-SRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261 Query: 238 MFKEDTPKKNK 206 E P + + Sbjct: 262 SPAEARPPRRQ 272
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 67.4 bits (163), Expect = 3e-11 Identities = 40/85 (47%), Positives = 49/85 (57%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL + S L ELF V+ VEVI+ T R S G+GFV+ SSKEE EAA Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGR-SRGFGFVTMSSKEEVEAACQQ 147 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 FNG EL GR++ V K+ S Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENS 172 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N V+VGNL W V L LF+ V +V++ + R S G+GFV++SS EE AI Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR-SRGFGFVTYSSAEEVNNAI 252 Query: 283 STFNGKELMGRSINVMFKEDTPKKNK 206 + +G +L GR+I V E P + + Sbjct: 253 ESLDGVDLNGRAIRVSPAEARPPRRQ 278
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 67.4 bits (163), Expect = 3e-11 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPA-VPSAPVEKNVVFVGNLTWRVRSRHLREL 404 A +A++ N LN R + V+ A P+ +P P V+VGNL W V + L +L Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQL 263 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F+ V V++ T R S G+GFV+ S +E AIS +G+ L GR+I V E+ Sbjct: 264 FSEHGKVVEARVVYDRETGR-SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322 Query: 223 TPKK 212 P + Sbjct: 323 RPPR 326 Score = 59.7 bits (143), Expect = 6e-09 Identities = 34/79 (43%), Positives = 48/79 (60%) Frame = -2 Query: 475 PVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEA 296 P E+ +FVGNL + V S+ L LF V+ EVI++ T + S G+GFV+ SS +EA Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQ-SRGFGFVTMSSVDEA 204 Query: 295 EAAISTFNGKELMGRSINV 239 E A+ FN +L GR + V Sbjct: 205 ETAVEKFNRYDLNGRLLTV 223
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 67.0 bits (162), Expect = 4e-11 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLREL 404 A A++ N +N R + V+ A + ++P P E++ ++VGN+ W + L +L Sbjct: 190 AEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQL 249 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F+ V S V++ T R S G+GFV+ +S+ E AI+ +G+ L GR+I V ED Sbjct: 250 FSEHGKVVSARVVYDRETGR-SRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAED 308 Query: 223 TPKKN 209 ++N Sbjct: 309 RSRRN 313 Score = 55.1 bits (131), Expect = 1e-07 Identities = 32/79 (40%), Positives = 46/79 (58%) Frame = -2 Query: 475 PVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEA 296 P E +FVGNL + V S L LF V+ EVI++ T + S G+GFV+ S+ EEA Sbjct: 132 PPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQ-SRGFGFVTMSTVEEA 190 Query: 295 EAAISTFNGKELMGRSINV 239 E A+ +N ++ GR + V Sbjct: 191 EKAVEMYNRYDVNGRLLTV 209
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 66.6 bits (161), Expect = 5e-11 Identities = 35/84 (41%), Positives = 52/84 (61%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N V+VGNL+W V L+ELF+ V +V++ + R S G+GFV++SS +E AI Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSSKEVNDAI 265 Query: 283 STFNGKELMGRSINVMFKEDTPKK 212 + NG +L GRSI V E+ P++ Sbjct: 266 DSLNGVDLDGRSIRVSAAEERPRR 289 Score = 63.2 bits (152), Expect = 5e-10 Identities = 37/73 (50%), Positives = 46/73 (63%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL + V S L LF V+ VEVI+ T R S G+GFV+ S+KEE EAA Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR-SRGFGFVTMSTKEEVEAAEQQ 147 Query: 277 FNGKELMGRSINV 239 FNG E+ GR+I V Sbjct: 148 FNGYEIDGRAIRV 160
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 66.6 bits (161), Expect = 5e-11 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLREL 404 A A++ LN ++ R + V+ A P+ P E + V+VGNL W V + L +L Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQL 168 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F+ V S V+ T R S G+GFV+ SS+ E AI+ +G+ L GR++ V E+ Sbjct: 169 FSEHGKVVSARVVSDRETGR-SRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227 Query: 223 TPKK 212 P++ Sbjct: 228 RPRR 231 Score = 60.1 bits (144), Expect = 5e-09 Identities = 34/81 (41%), Positives = 49/81 (60%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 S P E+ +FVGNL + V S L +F + V+ EVI++ T R S G+GFV+ S+ E Sbjct: 49 SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR-SRGFGFVTMSTVE 107 Query: 301 EAEAAISTFNGKELMGRSINV 239 EAE A+ NG ++ GR + V Sbjct: 108 EAEKAVELLNGYDMDGRQLTV 128
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 66.2 bits (160), Expect = 6e-11 Identities = 39/82 (47%), Positives = 48/82 (58%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL + V S L +LF S V+ VEVI+ T R S G+GFV+ SS E EAA Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGR-SRGFGFVTMSSVSEVEAAAQQ 151 Query: 277 FNGKELMGRSINVMFKEDTPKK 212 FNG EL GR + V PK+ Sbjct: 152 FNGYELDGRPLRVNAGPPPPKR 173 Score = 57.4 bits (137), Expect = 3e-08 Identities = 32/86 (37%), Positives = 47/86 (54%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N V+VGNL+W V L LF+ V VI+ + RS G+GFV++ S +E + AI Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDS-GRSKGFGFVTYDSSQEVQNAI 262 Query: 283 STFNGKELMGRSINVMFKEDTPKKNK 206 + +G +L GR I V E P + + Sbjct: 263 KSLDGADLDGRQIRVSEAEARPPRRQ 288
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 65.9 bits (159), Expect = 8e-11 Identities = 35/84 (41%), Positives = 52/84 (61%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N V+VGNL+W V L+ELF+ V +V++ + R S G+GFV++SS +E AI Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSAKEVNDAI 266 Query: 283 STFNGKELMGRSINVMFKEDTPKK 212 + NG +L GRSI V E+ P++ Sbjct: 267 DSLNGIDLDGRSIRVSAAEERPRR 290 Score = 61.2 bits (147), Expect = 2e-09 Identities = 36/73 (49%), Positives = 46/73 (63%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL + V S L LF V+ VEVI+ + R S G+GFV+ S+KEE EAA Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGR-SRGFGFVTMSTKEEVEAAEQQ 148 Query: 277 FNGKELMGRSINV 239 FNG E+ GR+I V Sbjct: 149 FNGYEIDGRAIRV 161
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Frame = -2 Query: 544 LNDRTIKVDFAKPKKKQPA-VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEV 368 LN R + V+ A P+ +P P ++VGN+ W + L ++F+ V S V Sbjct: 163 LNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARV 222 Query: 367 IFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKN 209 +F + R S G+GFV+ SS+ E AI+ +G+ L GR+I V E+ P++N Sbjct: 223 VFDRESGR-SRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/79 (39%), Positives = 47/79 (59%) Frame = -2 Query: 475 PVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEA 296 P E +FVGNL + + S L +LF V+ EVI++ T R S G+GFV+ S+ EEA Sbjct: 93 PSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDR-SRGFGFVTMSTVEEA 151 Query: 295 EAAISTFNGKELMGRSINV 239 + A+ ++ +L GR + V Sbjct: 152 DKAVELYSQYDLNGRLLTV 170
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 63.5 bits (153), Expect = 4e-10 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPV-EKNVVFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K ++++ A V E V++ N + + LRE+F++ Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T RS G+GFV++ + EEA+ A+S NGKE+ GR I V Sbjct: 214 FGNTLSVKVMMDDTG--RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L V L E F+ + S+ V T RRS GY +++F +AE A+ T Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIAT-RRSLGYAYINFQQPADAERALDT 71 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 N + + GR I +M+ + P KS Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKS 96 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/111 (28%), Positives = 55/111 (49%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + R I++ +++ + P + + V VF+ NL + ++ L + F++ Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQ---RDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E A AI T NG L R + V Sbjct: 123 GNILSCKVV---CDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170 Score = 37.7 bits (86), Expect = 0.024 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V NL + LR+ F+ + S +V+ T S G+GFV FSS EEA A++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM---TEGGHSKGFGFVCFSSPEEATKAVTE 352 Query: 277 FNGK 266 NG+ Sbjct: 353 MNGR 356
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 62.0 bits (149), Expect = 1e-09 Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPV-EKNVVFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K ++++ A V E V++ N + + LRE+F++ Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ + RS G+GFV++ + EEA+ A+S NGKE+ GR I V Sbjct: 214 FGNTLSVKVMMDDSG--RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/111 (28%), Positives = 54/111 (48%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + R I++ +++ + P + + V VF+ NL + ++ L + F++ Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQ---RDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F + E A AI T NG L R + V Sbjct: 123 GNILSCKVV---CDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170 Score = 37.0 bits (84), Expect = 0.041 Identities = 23/64 (35%), Positives = 34/64 (53%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V NL + LR+ F + S +V+ T S G+GFV FSS EEA A++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM---TEGGHSKGFGFVCFSSPEEATKAVTE 352 Query: 277 FNGK 266 NG+ Sbjct: 353 MNGR 356
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 60.5 bits (145), Expect = 3e-09 Identities = 34/87 (39%), Positives = 43/87 (49%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E +FVG L+W + L++ F GV VI+ T R S GYG+V F +K AE Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR-SRGYGYVDFENKSYAEK 224 Query: 289 AISTFNGKELMGRSINVMFKEDTPKKN 209 AI GKE+ GR IN P N Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGN 251 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPK--------KKQPAVPSAPVEKNVVFVGNLTWRVR 425 A A++ + ++ R I D + K KK PS P + +F+GNL++ Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP--SDTLFLGNLSFNAD 279 Query: 424 SRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSI 245 + ELFA V SV + H T + G+G+V FS+ E+A+ A+ G+ + R + Sbjct: 280 RDAIFELFAKHGEVVSVRIPTHPET-EQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338 Query: 244 NVMFKEDTPKKN 209 + F P + Sbjct: 339 RLDFSSPRPNND 350
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 59.7 bits (143), Expect = 6e-09 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPV-EKNVVFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K ++++ A V E V++ N + + L+E+F++ Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ + RS G+GFV++ + EEA+ A++ NGKE+ GR + V Sbjct: 214 FGNTLSVKVMMDNSG--RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +++G+L V L E F+ + S+ V T RRS GY +++F +AE A+ T Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIAT-RRSLGYAYINFQQPADAERALDT 71 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 N + + GR I +M+ + P KS Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKS 96 Score = 43.9 bits (102), Expect = 3e-04 Identities = 32/111 (28%), Positives = 55/111 (49%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + R I++ +++ + P + + V VF+ NL + ++ L + F++ Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQ---RDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ R GYGFV F ++E A AI T NG L R + V Sbjct: 123 GDILSCKVVCDEYGSR---GYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170 Score = 37.7 bits (86), Expect = 0.024 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V NL + LR+ F+ + S +V+ T S G+GFV FSS EEA A++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM---TEGGHSKGFGFVCFSSPEEATKAVTE 352 Query: 277 FNGK 266 NG+ Sbjct: 353 MNGR 356
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 58.9 bits (141), Expect = 1e-08 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K +K++ A A ++ V++ N + L+ELF Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGKEL G+ I V Sbjct: 214 FGPALSVKVM--TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/97 (31%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + G+ + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/111 (26%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ +N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 58.9 bits (141), Expect = 1e-08 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V F K+++ + + E V++ N + L+ELF Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGKEL G+ I V Sbjct: 214 FGPALSVKVM--TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/97 (31%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + G+ + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/111 (26%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ +N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K +K++ A A ++ V++ N + L++LF Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGKEL G+ I V Sbjct: 214 FGPALSVKVM--TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/97 (31%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + G+ + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/111 (26%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ +N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K +K++ A A ++ V++ N + L++LF Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGKEL G+ I V Sbjct: 214 FGPALSVKVM--TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/97 (31%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + G+ + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/111 (26%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ +N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 57.4 bits (137), Expect = 3e-08 Identities = 34/80 (42%), Positives = 44/80 (55%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+G L+W LR+ FA V +VI T R S G+GFV+F+ + A AAIS Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR-SRGFGFVNFNDEGAATAAISE 95 Query: 277 FNGKELMGRSINVMFKEDTP 218 +GKEL GR I V D P Sbjct: 96 MDGKELNGRHIRVNPANDRP 115
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 55.8 bits (133), Expect = 9e-08 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Frame = -2 Query: 562 NLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGV 383 N+ L TLN + I+ + K + S+ + +FVG+L V LR F P Sbjct: 128 NIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY 187 Query: 382 QSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGR--SINVMFKEDTPKKN 209 S V++ T S GYGFVSF+S+++A+ A+ + G++L GR IN K D N Sbjct: 188 LSGHVMWDMQTGS-SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 246 Score = 35.8 bits (81), Expect = 0.092 Identities = 16/74 (21%), Positives = 36/74 (48%) Frame = -2 Query: 460 VVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 V++VGNL + L++ F + +++++ ++ Y FV + +A A+ Sbjct: 75 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN--KNVNYAFVEYHQSHDANIALQ 132 Query: 280 TFNGKELMGRSINV 239 T NGK++ + + Sbjct: 133 TLNGKQIENNIVKI 146
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/80 (38%), Positives = 48/80 (60%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +++G L+ L++ F+S GV V+ + T R S GYGFV+F S++ A +AIS Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGR-SRGYGFVNFISEDSANSAISA 91 Query: 277 FNGKELMGRSINVMFKEDTP 218 NG+EL G +I+V +D P Sbjct: 92 MNGQELNGFNISVNVAKDWP 111
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 55.8 bits (133), Expect = 9e-08 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A+K +N LN R + V K +K++ A A ++ V++ N + L++LF Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGKEL G+ I V Sbjct: 214 FGPALSVKVM--TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 43.5 bits (101), Expect = 4e-04 Identities = 30/111 (27%), Positives = 54/111 (48%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +FV NL + ++ L + ++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S V+ S GYGFV F + E AE AI NG L GR + V Sbjct: 123 GNILSCNVV---CDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170 Score = 40.0 bits (92), Expect = 0.005 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ +N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 55.8 bits (133), Expect = 9e-08 Identities = 37/111 (33%), Positives = 57/111 (51%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A++NLN TLN+ IKV+ AK ++ P+ P K +FVGNLT + R+ +RELF Sbjct: 56 AIQNLNGYTLNEFAIKVEAAKSRR----APNTPTTK--IFVGNLTDKTRAPEVRELFQKY 109 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 V +++ YGFV + + AI NG+ + G+ + V Sbjct: 110 GTVVECDIV---------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + ++ LR LF V +V+ YGFV ++++ AI Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVV---------KNYGFVHMETEQQGRDAIQN 59 Query: 277 FNGKELMGRSINV 239 NG L +I V Sbjct: 60 LNGYTLNEFAIKV 72
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 55.5 bits (132), Expect = 1e-07 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A++ +N LNDR + V K +K++ A A ++ V++ N V L+ELF+ Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ +S G+GFVS+ E+A A+ NGKE+ G+ I V Sbjct: 214 FGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/85 (34%), Positives = 43/85 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L V L E F+ V S+ V T RRS GY +V+F +AE A+ T Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMIT-RRSLGYAYVNFQQPADAERALDT 71 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 N + G+ I +M+ + P KS Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKS 96 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/111 (26%), Positives = 55/111 (49%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + I++ +++ + P++ + V VF+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQ---RDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GY FV F ++E A+ AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/64 (34%), Positives = 35/64 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +++ NL + LR+ F+ + S +V+ RS G+GFV FSS EEA A++ Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTE 352 Query: 277 FNGK 266 NG+ Sbjct: 353 MNGR 356
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A+ +N LNDR + V K +K++ A A ++ V++ N + L+E+F Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGK 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGK++ G+S+ V Sbjct: 214 YGPALSVKVM--TDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263 Score = 52.4 bits (124), Expect = 1e-06 Identities = 32/97 (32%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + GR + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKS 96 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/111 (27%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + R +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170 Score = 38.1 bits (87), Expect = 0.019 Identities = 23/64 (35%), Positives = 34/64 (53%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V NL + LR+ F + S +V+ RS G+GFV FSS EEA A++ Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTE 352 Query: 277 FNGK 266 NG+ Sbjct: 353 MNGR 356
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 55.1 bits (131), Expect = 1e-07 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFAS 395 A+ +N LNDR + V K +K++ A A ++ V++ N + L+E F Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQ 213 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 SV+V+ T +S G+GFVSF E+A+ A+ NGK+L G++I V Sbjct: 214 YGAALSVKVM--TDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/97 (31%), Positives = 49/97 (50%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 P+ PS P+ ++VG+L V L E F+ + S+ V T RRS GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNF 59 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A+ T N + G+ + +M+ + P KS Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/111 (26%), Positives = 56/111 (50%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + + +++ +++ + P++ + V +F+ NL + ++ L + F++ Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAF 122 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V+ S GYGFV F ++E AE AI NG L R + V Sbjct: 123 GNILSCKVV---CDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170 Score = 40.0 bits (92), Expect = 0.005 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+ ++N LN + I V A+ K ++ E+ ++V NL Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGK 266 + LR+ F + S +V+ RS G+GFV FSS EEA A++ NG+ Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMMEGG---RSKGFGFVCFSSPEEATKAVTEMNGR 356
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-------VFVGNLTWRVRS 422 A + ++ LN + + R IKV+ + + + + E + V++GNL V + Sbjct: 138 ANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTN 197 Query: 421 RHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSIN 242 L++ F+ V +V T +S G+GFVSFSS+EE EAAI N L G+ I Sbjct: 198 ELLKDFFSEKGKVLGAKVQ-RTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIR 256 Query: 241 V 239 V Sbjct: 257 V 257
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/72 (44%), Positives = 41/72 (56%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W + L + FA+ V +VI T R S G+GFV+FSS++ AI Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGR-SRGFGFVTFSSEQSMLDAIENM 69 Query: 274 NGKELMGRSINV 239 NGKEL GR+I V Sbjct: 70 NGKELDGRNITV 81
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/87 (33%), Positives = 44/87 (50%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 NVVFVGN+ + V + + E+F V++ +++ T GYGF F E A+ Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPET-GSGKGYGFCEFFDSETTAMAV 65 Query: 283 STFNGKELMGRSINVMFKEDTPKKNKS 203 N EL R I V F + P++N+S Sbjct: 66 RKLNNSELGPRKIRVEFPSNDPRRNQS 92
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/72 (44%), Positives = 39/72 (54%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W + L FAS + +VI T R S G+GFV+FSS+ AI Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGR-SRGFGFVTFSSENSMLDAIENM 69 Query: 274 NGKELMGRSINV 239 NGKEL GR+I V Sbjct: 70 NGKELDGRNITV 81
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPV-EKNVVFVGNLTWRVRSRHLREL 404 A AL+ + + R+I VDF K + P + V+ V NL++ LRE+ Sbjct: 374 ANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREV 433 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 227 F ++ + R+ G+ F+ FSS E+A+ A+ + N E+ GRSI + F + Sbjct: 434 FEKATSIRIPQ------NQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486 Score = 34.3 bits (77), Expect = 0.27 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 13/105 (12%) Frame = -2 Query: 514 AKPKKKQP-AVPSAPVEKN-------VVFVGNLT----WRVRSRHLRELFASTP-GVQSV 374 AK KK+ P +P A K +F+GNL + LRE F+ +Q + Sbjct: 207 AKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDI 266 Query: 373 EVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +G+V FSS+EE E A+ GK+++G + + Sbjct: 267 RI-------GNSKKFGYVDFSSEEEVEKALK-LTGKKILGTEVKI 303
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 51.6 bits (122), Expect = 2e-06 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 10/108 (9%) Frame = -2 Query: 511 KPKKKQPAVPSAPV----------EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIF 362 K +K +PA P E VFVG L+W V + L + F + VI Sbjct: 237 KKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIM 296 Query: 361 HTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTP 218 + R S GYG+V F + E A+AA++ KE+ GR +N+ P Sbjct: 297 DGQSGR-SKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343 Score = 37.7 bits (86), Expect = 0.024 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Frame = -2 Query: 544 LNDRTIKVDFAKPKKKQPAVPSAPVEKN----------VVFVGNLTWRVRSRHLRELFAS 395 ++ R + +D + P+ P + N VFVGNL++ L F Sbjct: 329 IDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG 388 Query: 394 TPGVQSVEVIFHTTTPR--RSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDT 221 +QS+ + T P+ R G+G+V+FS + A+ + NG + GR + F T Sbjct: 389 CGDIQSIRL---PTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDF--ST 442 Query: 220 PK 215 P+ Sbjct: 443 PR 444
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/89 (33%), Positives = 49/89 (55%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+ Q A + N +FV + R++ L+++F+ V V ++ T + S G+G Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT-KASRGFG 145 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSINV 239 F+SFS+ EEA +AI N +E GR +NV Sbjct: 146 FLSFSTVEEATSAIDNLNSQEFYGRVLNV 174
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+K LN+ L + IKV+ A +K V + +FVGNL V + L + F++ Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGAN------IFVGNLDPEVDEKLLYDTFSAF 123 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV--MFKEDT 221 + V I S G+ F++F+S E ++ A+ NG+ L R+I V FK D+ Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDS 182
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 AL A+ NLN T+ ++ IKV FA+P +Q + ++V NL+ + L +F Sbjct: 132 ALRAINNLNGITVRNKRIKVSFARPGGEQ-------LRDTNLYVTNLSRSITDEQLETIF 184 Query: 400 ASTPGVQSVEVI--FHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ HT TPR G F+ F+ +EEA+ AIS N Sbjct: 185 GKYGQIVQKNILRDKHTGTPR---GVAFIRFNKREEAQEAISALN 226 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L ++ R L LF + + + ++ T S GYGFV F S+ +A AI+ Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGY-SYGYGFVDFGSEADALRAINN 138 Query: 277 FNGKELMGRSINVMF 233 NG + + I V F Sbjct: 139 LNGITVRNKRIKVSF 153
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 50.8 bits (120), Expect = 3e-06 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV--------VFVGNLTWRVR 425 A +AL +N + + +KV++A Q S+ + VFVG+L+ ++ Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQIT 118 Query: 424 SRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSI 245 + ++ FA + V+ T + S GYGFVSF +K +AE AI G+ L GR I Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGK-SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177 Query: 244 NVMFKEDTPKKNKS 203 + P KS Sbjct: 178 RTNWATRKPPAPKS 191 Score = 38.9 bits (89), Expect = 0.011 Identities = 24/84 (28%), Positives = 43/84 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL+ V + +LF+ ++ ++I T + Y FV F A AA++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG---NDPYCFVEFHEHRHAAAALAA 65 Query: 277 FNGKELMGRSINVMFKEDTPKKNK 206 NG+++MG+ + V + TP K Sbjct: 66 MNGRKIMGKEVKVNW-ATTPSSQK 88
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 50.4 bits (119), Expect = 4e-06 Identities = 39/126 (30%), Positives = 59/126 (46%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A +AL +N + + +KV++A Q S VFVG+L+ + + ++ F Sbjct: 78 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH---VFVGDLSPEITTEDIKSAF 134 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDT 221 A + V+ T + S GYGFVSF +K +AE AI G+ L GR I + Sbjct: 135 APFGKISDARVVKDMATGK-SKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 Query: 220 PKKNKS 203 P KS Sbjct: 194 PPAPKS 199
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 50.4 bits (119), Expect = 4e-06 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV--------VFVGNLTWRVR 425 A +AL +N + + +KV++A Q S+ + VFVG+L+ + Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118 Query: 424 SRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSI 245 + ++ FA + V+ T + S GYGFVSF +K +AE AI G+ L GR I Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGK-SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177 Query: 244 NVMFKEDTPKKNKS 203 + P KS Sbjct: 178 RTNWATRKPPAPKS 191 Score = 38.9 bits (89), Expect = 0.011 Identities = 24/84 (28%), Positives = 43/84 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL+ V + +LF+ ++ ++I T + Y FV F A AA++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG---NDPYCFVEFHEHRHAAAALAA 65 Query: 277 FNGKELMGRSINVMFKEDTPKKNK 206 NG+++MG+ + V + TP K Sbjct: 66 MNGRKIMGKEVKVNW-ATTPSSQK 88 Score = 36.6 bits (83), Expect = 0.054 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 18/138 (13%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV------------------V 455 A +A++ + L R I+ ++A K P P + E N V Sbjct: 160 AENAIQQMGGQWLGGRQIRTNWATRK---PPAPKSTYESNTKQLSYDEVVSQSSPNNCTV 216 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 + G +T + + +R+ F+ + + V GY FV FSS E A AI + Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-------PDKGYSFVRFSSHESAAHAIVSV 269 Query: 274 NGKELMGRSINVMFKEDT 221 NG + G + + ++T Sbjct: 270 NGTTIEGHVVKCYWGKET 287
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 50.4 bits (119), Expect = 4e-06 Identities = 39/126 (30%), Positives = 59/126 (46%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A +AL +N + + +KV++A Q S VFVG+L+ + + ++ F Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH---VFVGDLSPEITTEDIKSAF 117 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDT 221 A + V+ T + S GYGFVSF +K +AE AI G+ L GR I + Sbjct: 118 APFGKISDARVVKDMATGK-SKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176 Query: 220 PKKNKS 203 P KS Sbjct: 177 PPAPKS 182
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVE-KNVVFVGNLTWRVRSRHLREL 404 A A+++LN + + DR I++ + PS + K VF+ NL + ++ L E Sbjct: 98 ASRAMESLNYAPIRDRPIRIMLSNRD------PSTRLSGKGNVFIKNLDASIDNKALYET 151 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 F+S + S +V RS GYGFV F +E A+AAI NG L + + V Sbjct: 152 FSSFGTILSCKVAMDVVG--RSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/85 (30%), Positives = 41/85 (48%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L V HL +LF V ++ V T RS GY +V+F++ E+A A+ + Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLT--HRSLGYAYVNFANPEDASRAMES 104 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 N + R I +M P S Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLS 129 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +++ NL V L+E+F+ V S +V+ ++ R G+GFV++S+ EEA A+ Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSR--GFGFVAYSNPEEALLAMKE 387 Query: 277 FNGKELMGR 251 NGK ++GR Sbjct: 388 MNGK-MIGR 395 Score = 38.9 bits (89), Expect = 0.011 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLREL 404 A +A+ LN LND+ + V F + + + + A V+V NL + L++ Sbjct: 185 AQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKT 244 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKEL 260 F + S V+ + RS +GFV+F S E A A+ NG L Sbjct: 245 FGKYGDISSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKMNGISL 290
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 50.1 bits (118), Expect = 5e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L + + LR +F ++S++++ + T R S GYGF++FS E A+ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR-SKGYGFITFSDSECAKKALEQ 310 Query: 277 FNGKELMGRSINV 239 NG EL GR + V Sbjct: 311 LNGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 50.1 bits (118), Expect = 5e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L + + LR +F ++S++++ + T R S GYGF++FS E A+ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR-SKGYGFITFSDSECAKKALEQ 310 Query: 277 FNGKELMGRSINV 239 NG EL GR + V Sbjct: 311 LNGFELAGRPMKV 323
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVE-KNVVFVGNLTWRVRSRHLREL 404 A A++ LN + L DR I++ + PS + K +F+ NL + ++ L E Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRD------PSTRLSGKGNIFIKNLDASIDNKALFET 155 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 F+S + S +V T RS GYGFV F +E A+AAI NG + + + V Sbjct: 156 FSSFGTILSCKVAMDVTG--RSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/110 (27%), Positives = 47/110 (42%) Frame = -2 Query: 532 TIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTT 353 +++V + P V + ++ G+L +V HL +LF V SV V Sbjct: 26 SVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN 85 Query: 352 TPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 RRS GY +++FS+ +A A+ N L R I +M P S Sbjct: 86 --RRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS 133 Score = 42.7 bits (99), Expect = 8e-04 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVV-----------FVGNLTW 434 A SA++ +N +L D + V A+ K ++ E+ + ++ NL Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMG 254 V L+E+F+ V S +V+ + R G+GFV++S+ EEA A+S NGK ++G Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR--GFGFVAYSNPEEALRALSEMNGK-MIG 398 Query: 253 R 251 R Sbjct: 399 R 399 Score = 35.8 bits (81), Expect = 0.092 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-VFVGNLTWRVRSRHLREL 404 A +A+ LN +ND+ + V ++++ + P + V+V NL + LR+ Sbjct: 189 AQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKT 248 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKEL 260 F GV S V+ + S +GFV+F E A +A+ NG L Sbjct: 249 FGKF-GVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISL 294
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E+ +FVG L + + L + F+S + V V+ T +RS G+GF++F++ E A Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRET-QRSRGFGFITFTNPEHASV 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NG+ L GR I V Sbjct: 63 AMRAMNGESLDGRQIRV 79
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 49.3 bits (116), Expect = 8e-06 Identities = 31/89 (34%), Positives = 44/89 (49%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 S P +F+ NL L +LF VQSV+++ TT + GYGFVS ++ + Sbjct: 432 SGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTT-NQCKGYGFVSMTNYD 490 Query: 301 EAEAAISTFNGKELMGRSINVMFKEDTPK 215 EA AI NG + R + V FK + K Sbjct: 491 EAAMAIRALNGYTMGNRVLQVSFKTNKAK 519 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/104 (27%), Positives = 49/104 (47%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L ++TIKV FA+P S ++ ++V L + + L +F Sbjct: 252 AEQAVNVLNGLRLQNKTIKVSFARPS-------SDAIKGANLYVSGLPKTMTQQELEAIF 304 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNG 269 A + + ++ + ++ G GF+ F +EEA AI NG Sbjct: 305 APFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVI----------FHTTTPRR--SAGYGFVSF 314 + V L + +R LF+S ++SV++I + P + S GYGFV++ Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMF 233 ++AE A++ NG L ++I V F Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSF 273
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 49.3 bits (116), Expect = 8e-06 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 10/112 (8%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKN----------VVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFH 359 P AV SAP ++VG+L + V L + F V +V V Sbjct: 11 PNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD 70 Query: 358 TTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 T RRS GYG+V+F++ ++A AI N L G+ I VM+ P +S Sbjct: 71 LVT-RRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121 Score = 43.1 bits (100), Expect = 6e-04 Identities = 31/114 (27%), Positives = 58/114 (50%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A++ LN L + I+V ++ + P+V + +F+ NL + + L + F Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSH---RDPSVRRSGAGN--IFIKNLDESIDHKALHDTF 144 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +S + S +V ++ +S GYGFV ++++E A+ AI NG L + + V Sbjct: 145 SSFGNIVSCKVAVDSSG--QSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 Score = 38.9 bits (89), Expect = 0.011 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV-----------VFVGNLTW 434 A A+++LN +D+ V A+ K ++ E+N+ ++V NL Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 327 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMG 254 + L+E+F+ V S +V+ S G GFV+F++ EEA A+S +GK + Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDPNGT--SKGSGFVAFATPEEATEAMSQLSGKMIES 385 Query: 253 RSINVMF---KED 224 + + V KED Sbjct: 386 KPLYVAIAQRKED 398 Score = 36.6 bits (83), Expect = 0.054 Identities = 27/104 (25%), Positives = 49/104 (47%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A++ LN LND+ + V ++++ + + NV +V NL L+ F Sbjct: 177 AQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNV-YVKNLAESTTDDDLKNAF 235 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNG 269 + S V+ +S G+GFV+F + ++A A+ + NG Sbjct: 236 GEYGKITSAVVM--KDGEGKSKGFGFVNFENADDAARAVESLNG 277
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 49.3 bits (116), Expect = 8e-06 Identities = 31/89 (34%), Positives = 44/89 (49%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 S P +F+ NL L +LF VQSV+++ TT + GYGFVS ++ + Sbjct: 396 SGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTT-NQCKGYGFVSMTNYD 454 Query: 301 EAEAAISTFNGKELMGRSINVMFKEDTPK 215 EA AI NG + R + V FK + K Sbjct: 455 EAAMAIRALNGYTMGNRVLQVSFKTNKAK 483 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/104 (27%), Positives = 49/104 (47%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L ++TIKV FA+P S ++ ++V L + + L +F Sbjct: 216 AEQAVNVLNGLRLQNKTIKVSFARPS-------SDAIKGANLYVSGLPKTMTQQELEAIF 268 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNG 269 A + + ++ + ++ G GF+ F +EEA AI NG Sbjct: 269 APFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVI----------FHTTTPRR--SAGYGFVSF 314 + V L + +R LF+S ++SV++I + P + S GYGFV++ Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMF 233 ++AE A++ NG L ++I V F Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVSF 237
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+K +N+ L + I+V+ A K V + +F+GNL + + L + F++ Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGAN------IFIGNLDPEIDEKLLYDTFSAF 123 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV--MFKEDT 221 + I S GY F++F+S + ++AAI NG+ L R I V FK+D+ Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182 Score = 39.7 bits (91), Expect = 0.006 Identities = 27/73 (36%), Positives = 37/73 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V+VG L +V L ELF V + + T + GYGFV F S+E+A+ AI Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ-GYGFVEFLSEEDADYAIKI 73 Query: 277 FNGKELMGRSINV 239 N +L G+ I V Sbjct: 74 MNMIKLYGKPIRV 86
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VFVGN+ + L+++F+ V S +++ T + GYGF + +E A +A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRN 76 Query: 277 FNGKELMGRSINV 239 NG+E GR++ V Sbjct: 77 LNGREFSGRALRV 89
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E+ +FVG L + + L + F+S + V V+ T +RS G+GF++F++ E A Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRET-QRSRGFGFITFTNPEHASD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NG+ L GR I V Sbjct: 63 AMRAMNGESLDGRQIRV 79
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+ LN L +TIKV +A+P S ++ +++ L + + + ++F+ Sbjct: 77 AINTLNGLRLQSKTIKVSYARPS-------SEVIKDANLYISGLPRTMTQKDVEDMFSRF 129 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKEDTP 218 + + V+ TT S G F+ F + EAE AI++FNG + G S I V F + P Sbjct: 130 GRIINSRVLVDQTTGL-SRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAAN-P 187 Query: 217 KKNKS 203 +NK+ Sbjct: 188 NQNKN 192 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/75 (34%), Positives = 41/75 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + LR LF+S V+S ++I S GYGFV++ + ++AE AI+T Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLI-RDKVAGHSLGYGFVNYVTAKDAERAINT 80 Query: 277 FNGKELMGRSINVMF 233 NG L ++I V + Sbjct: 81 LNGLRLQSKTIKVSY 95 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+ NL L ++F V +V+VI T + G+GFV+ ++ EEA AI++ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTNYEEAAMAIAS 304 Query: 277 FNGKELMGRSINVMFKEDTPKK 212 NG L + + V FK + K Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/72 (40%), Positives = 38/72 (52%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W R L FA V ++I T R S G+GFV+F ++ + AI Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGR-SRGFGFVTFKDEKAMKDAIEGM 69 Query: 274 NGKELMGRSINV 239 NG++L GRSI V Sbjct: 70 NGQDLDGRSITV 81
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/72 (36%), Positives = 37/72 (51%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W L + F+ + ++I T R S G+GFV+F ++ AI Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGR-SRGFGFVTFKDEKSMRDAIEGM 67 Query: 274 NGKELMGRSINV 239 NG+EL GR+I V Sbjct: 68 NGQELDGRNITV 79
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/77 (32%), Positives = 45/77 (58%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +FVG L++ + L ++F+ + V V+ T +RS G+GFV+F + ++A+ Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENIDDAKD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/77 (32%), Positives = 45/77 (58%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +FVG L++ + L ++F+ + V V+ T +RS G+GFV+F + ++A+ Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENIDDAKD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+G+L V L+ +F P S +V + T ++S G+G+++F KEEAE A+ Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVT-KKSLGHGYLNFEDKEEAEKAMEE 151 Query: 277 FNGKELMGRSINVM--FKEDTPKKN 209 N ++ G+ I +M + T +KN Sbjct: 152 LNYTKVNGKEIRIMPSLRNTTFRKN 176
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/73 (38%), Positives = 37/73 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVG+L V L ELF + S I H S GYGFV F++ +E + A+S Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 277 FNGKELMGRSINV 239 G L GR+I V Sbjct: 225 MQGVFLNGRAIKV 237
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/72 (38%), Positives = 37/72 (51%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W L F+ V ++I T R S G+GFV+F ++ + AI Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGR-SRGFGFVTFKDEKSMKDAIDEM 67 Query: 274 NGKELMGRSINV 239 NGKEL GR+I V Sbjct: 68 NGKELDGRTITV 79
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 47.8 bits (112), Expect = 2e-05 Identities = 28/72 (38%), Positives = 38/72 (52%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W R L F+ V ++I T R S G+GFV+F ++ + AI Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGR-SRGFGFVTFKDEKSMKDAIEGM 69 Query: 274 NGKELMGRSINV 239 NG++L GRSI V Sbjct: 70 NGQDLDGRSITV 81
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/77 (32%), Positives = 45/77 (58%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +FVG L++ + L ++F+ + V V+ T +RS G+GFV+F + ++A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENIDDAKD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/77 (32%), Positives = 45/77 (58%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +FVG L++ + L ++F+ + V V+ T +RS G+GFV+F + ++A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENIDDAKD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/77 (32%), Positives = 45/77 (58%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +FVG L++ + L ++F+ + V V+ T +RS G+GFV+F + ++A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENIDDAKD 62 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPV-EKNVVFVGNLTWRVRSRHLREL 404 A AL+ + ++ R + +D+ K +Q + E + V NL++ L+EL Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQEL 480 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F ++ + R GY FV F + E+A+ A+++ N E+ GR+I + F Sbjct: 481 FKKATSIKMPQ-----NNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP 535 Query: 223 TPKK 212 + +K Sbjct: 536 SWQK 539 Score = 43.5 bits (101), Expect = 4e-04 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKP---KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLR 410 A AL + N + + R I+++F+ P K A + +FV L+ LR Sbjct: 511 AKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLR 570 Query: 409 ELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMF 233 E F G S ++ T S G+GFV FSS E+A+AA E+ G + + F Sbjct: 571 ESFE---GSISARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDF 625 Score = 35.8 bits (81), Expect = 0.092 Identities = 28/105 (26%), Positives = 48/105 (45%) Frame = -2 Query: 559 LNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQ 380 LN L IK++ AK K+ + +FV NL +RV ++ +F + Sbjct: 340 LNGKKLMGLEIKLEKAKSKESLKENKKER-DARTLFVKNLPYRVTEDEMKNVFEN----- 393 Query: 379 SVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSI 245 ++EV S G ++ F ++ EAE A+ G E+ GR++ Sbjct: 394 ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAM 438
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLND-RTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLREL 404 AL A++ L+ L R + V+ ++P+ P+ +FVGN++ S+ LR L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPR---------PLNTWKIFVGNVSAACTSQELRSL 98 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F V +V+ Y FV + +A+AAI+ NGKE+ G+ INV Sbjct: 99 FERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149 Query: 223 TPKK 212 KK Sbjct: 150 GQKK 153
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Frame = -2 Query: 580 ALSALKNLNLSTLND-RTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLREL 404 AL A++ L+ L R + V+ ++P+ P+ +FVGN++ S+ LR L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPR---------PLNTWKIFVGNVSAACTSQELRSL 98 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F V +V+ Y FV + +A+AAI+ NGKE+ G+ INV Sbjct: 99 FERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149 Query: 223 TPKK 212 KK Sbjct: 150 GQKK 153
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKV-------DFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRS 422 A +AL +N TL+ T+ V D A+ ++K+ + + + NL ++ Sbjct: 651 AQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATK 710 Query: 421 RHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSIN 242 + +R LF + ++SV V R + G+GF F S EAE A+ L+GR + Sbjct: 711 KDVRSLFGAYGQLRSVRV--PKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLV 768 Query: 241 VMFKED 224 + F + Sbjct: 769 LEFANE 774 Score = 35.4 bits (80), Expect = 0.12 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 19/101 (18%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTP-------RRSAGYGFVSFSSKEE 299 +F+ NL + ++ L E F G S + T P S G+GF F +K + Sbjct: 594 LFIKNLNFSTTNQSLIEAFRPLDGFVSARI---KTKPDPKNPGQTLSMGFGFADFKTKAQ 650 Query: 298 AEAAISTFNGKELMGRSINVMF------------KEDTPKK 212 A+AA++ NG L ++ V KEDT KK Sbjct: 651 AQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKK 691
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/85 (36%), Positives = 39/85 (45%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P+ VFVGNL RVR L ELF + V + +S +GFV F Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKS--FGFVCFKHP 60 Query: 304 EEAEAAISTFNGKELMGRSINVMFK 230 E AI+ NG L GR INV ++ Sbjct: 61 ESVSYAIALLNGIRLYGRPINVQYR 85
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+ LN L +TIKV +A+P SA + ++V L + + + +LF+ Sbjct: 96 AINTLNGLKLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMSQKEMEQLFSQY 148 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKEDTP 218 + + ++ T S G GF+ F + EAE AI NG++ +G + I V F + Sbjct: 149 GRIITSRILLDQATGV-SRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207 Query: 217 KK 212 +K Sbjct: 208 QK 209 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Frame = -2 Query: 493 PAVPSAPV---------EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR 341 PA+P+ P+ K + V L + + LF S ++S +++ T + Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQ- 78 Query: 340 SAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMF 233 S GYGFV++S +A+ AI+T NG +L ++I V + Sbjct: 79 SLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/85 (36%), Positives = 48/85 (56%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FV NL+ L +LF V +V+VI TT + G+GFV+ ++ +EA AI++ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT-NKCKGFGFVTMTNYDEAAMAIAS 344 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 NG L R + V FK T K++K+ Sbjct: 345 LNGYRLGERVLQVSFK--TSKQHKA 367
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 47.4 bits (111), Expect = 3e-05 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 152 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 153 SQYGRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211 Query: 226 DTPKKN 209 + +K+ Sbjct: 212 NPSQKS 217 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + R LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 103 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 104 INTLNGLRLQTKTIKVSY 121 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/85 (36%), Positives = 46/85 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FV NL+ L +LF V +V+VI T + G+GFV+ ++ +EA AI++ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNT-NKCKGFGFVTMTNYDEAAMAIAS 357 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 NG L R + V FK T K +KS Sbjct: 358 LNGYRLGDRVLQVSFK--TNKAHKS 380
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + LR LF+S V+S ++I S GYGFV++ + ++AE AIST Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLI-RDKVAGHSLGYGFVNYVTAKDAERAIST 80 Query: 277 FNGKELMGRSINVMF 233 NG L ++I V + Sbjct: 81 LNGLRLQSKTIKVSY 95 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+ LN L +TIKV +A+P S ++ +++ L + + + ++F+ Sbjct: 77 AISTLNGLRLQSKTIKVSYARPS-------SEVIKDANLYISGLPRTMTQKDVEDMFSRF 129 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKEDTP 218 + + V+ TT S G F+ F + EAE AI++F G + G S I V F + P Sbjct: 130 GRIINSRVLVDQTT-GLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAAN-P 187 Query: 217 KKNKS 203 +NK+ Sbjct: 188 NQNKN 192 Score = 38.9 bits (89), Expect = 0.011 Identities = 25/82 (30%), Positives = 42/82 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+ NL L ++F V +V+VI T + G+GFV+ ++ EE+ AI++ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTNYEESAMAIAS 304 Query: 277 FNGKELMGRSINVMFKEDTPKK 212 NG L + + V FK + K Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/84 (30%), Positives = 42/84 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V+VGNLT +V+ L F + SV + F+ G+ FV F +++AE A Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP------GFAFVEFEHRDDAEKACDI 62 Query: 277 FNGKELMGRSINVMFKEDTPKKNK 206 NG EL+G + V + P++ + Sbjct: 63 LNGSELLGSQLRVEISKGRPRQGR 86
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 47.4 bits (111), Expect = 3e-05 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 157 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 158 SQYGRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216 Query: 226 DTPKKN 209 + +K+ Sbjct: 217 NPSQKS 222 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + R LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 108 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 109 INTLNGLRLQTKTIKVSY 126 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/85 (36%), Positives = 46/85 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FV NL+ L +LF V +V+VI T + G+GFV+ ++ +EA AI++ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNT-NKCKGFGFVTMTNYDEAAMAIAS 362 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 NG L R + V FK T K +KS Sbjct: 363 LNGYRLGDRVLQVSFK--TNKAHKS 385
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 47.4 bits (111), Expect = 3e-05 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 145 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 146 SQYGRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 204 Query: 226 DTPKKN 209 + +K+ Sbjct: 205 NPSQKS 210 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + R LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 96 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 97 INTLNGLRLQTKTIKVSY 114 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/85 (36%), Positives = 46/85 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FV NL+ L +LF V +V+VI T + G+GFV+ ++ +EA AI++ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNT-NKCKGFGFVTMTNYDEAAMAIAS 350 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 NG L R + V FK T K +KS Sbjct: 351 LNGYRLGDRVLQVSFK--TNKAHKS 373
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/85 (34%), Positives = 45/85 (52%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL++ V L +FA V+ V++ T R G+GFV + E AAI Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMR-GFGFVELEADAEETAAIEA 61 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 +G E MGR + V + P++N+S Sbjct: 62 LDGAEWMGRDLKV--NKAKPRENRS 84
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/87 (28%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 149 KERKRRSPSPKPTK--VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA 206 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + +EAE A+ +G ++ G+ I Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/87 (28%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 149 KERKRRSPSPKPTK--VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA 206 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + +EAE A+ +G ++ G+ I Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/87 (28%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 149 KERKRRSPSPKPTK--VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA 206 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + +EAE A+ +G ++ G+ I Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/87 (28%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 149 KERKRRSPSPKPTK--VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA 206 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + +EAE A+ +G ++ G+ I Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/87 (28%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 149 KERKRRSPSPKPTK--VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYA 206 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + +EAE A+ +G ++ G+ I Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEI 233
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/108 (29%), Positives = 50/108 (46%) Frame = -2 Query: 535 RTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHT 356 R + V+ ++P+ P+ +FVGN++ S+ LR LF V +V+ Sbjct: 64 RALVVEMSRPR---------PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--- 111 Query: 355 TTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 Y FV + +A+AAI+ NGKE+ G+ INV KK Sbjct: 112 ------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/108 (29%), Positives = 50/108 (46%) Frame = -2 Query: 535 RTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHT 356 R + V+ ++P+ P+ +FVGN++ S+ LR LF V +V+ Sbjct: 64 RALVVEMSRPR---------PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--- 111 Query: 355 TTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 Y FV + +A+AAI+ NGKE+ G+ INV KK Sbjct: 112 ------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Frame = -2 Query: 490 AVPSAPVEKNV-VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 A PS + ++VG L V L ELF S V S+ V T RRS GY +V+F Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVT-RRSLGYAYVNF 128 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 + E+ E A+ N + GR +M+ + P K Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRK 164 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/73 (28%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+ NL V L+ F++ + S +++ T +S G+GFV +++ EEA A++ Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM--TDEQGKSKGFGFVCYTTPEEANKAVTE 423 Query: 277 FNGKELMGRSINV 239 N + L G+ + V Sbjct: 424 MNQRMLAGKPLYV 436 Score = 37.4 bits (85), Expect = 0.032 Identities = 30/111 (27%), Positives = 52/111 (46%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL LN + + R ++ +++ + P++ VF+ NL + ++ L + F++ Sbjct: 137 ALDELNYTLIKGRPCRIMWSQ---RDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSAF 191 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V + GYGFV F S E A AAI NG L + + V Sbjct: 192 GKILSCKVAVDELG--NAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 47.0 bits (110), Expect = 4e-05 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+ LN L +TIKV +A+P SA + ++V L + + + +LF+ Sbjct: 96 AINTLNGLKLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMSQKEMEQLFSQY 148 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKEDTP 218 + + ++ T S G GF+ F + EAE AI NG++ +G + I V F + Sbjct: 149 GRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS 207 Query: 217 KK 212 +K Sbjct: 208 QK 209 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Frame = -2 Query: 493 PAVPSAPV---------EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR 341 PA+P+ P+ K + V L + + LF S ++S +++ T + Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQ- 78 Query: 340 SAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMF 233 S GYGFV++S +A+ AI+T NG +L ++I V + Sbjct: 79 SLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/85 (36%), Positives = 48/85 (56%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FV NL+ L +LF V +V+VI TT + G+GFV+ ++ +EA AI++ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT-NKCKGFGFVTMTNYDEAAMAIAS 344 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 NG L R + V FK T K++K+ Sbjct: 345 LNGYRLGERVLQVSFK--TSKQHKA 367
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/72 (37%), Positives = 36/72 (50%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W L+ F+ V ++I + RS G+GFV+F ++ AI Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKII-NDRESGRSRGFGFVTFKDEKAMRDAIEEM 67 Query: 274 NGKELMGRSINV 239 NGKEL GR I V Sbjct: 68 NGKELDGRVITV 79
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 FVG L W R L F+ + ++I T R S G+GFV+F ++ + AI Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGR-SRGFGFVTFKDEKSMKDAIEGM 69 Query: 274 NGKELMGRSINV 239 NG++L GRSI V Sbjct: 70 NGQDLDGRSITV 81
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/87 (29%), Positives = 46/87 (52%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYG 326 K+++ PS K V +G LT V H+ E+F++ ++ +++ P S GY Sbjct: 126 KERKRRSPSPRPTK--VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYA 183 Query: 325 FVSFSSKEEAEAAISTFNGKELMGRSI 245 +V F + EEAE A+ +G ++ G+ I Sbjct: 184 YVEFEAPEEAEKALKHMDGGQIDGQEI 210
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 46.6 bits (109), Expect = 5e-05 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A +A K ++ L+ T+ V FA+ + + + + NL + R +R+LF Sbjct: 680 ARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLF 739 Query: 400 ASTPGVQSVEVI--FHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSI 245 +S ++SV + F TT G+GFV +S+ EA++A+ L+GR + Sbjct: 740 SSQGQLKSVRLPKKFDNTT----RGFGFVEYSTVREAQSAMEALKHTHLLGRHL 789 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 346 RRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMF 233 R S GYGFV F S + A A +GK L ++ V F Sbjct: 664 RLSMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTF 701
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 145 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 146 SQYGRIITSRILVDQVTGI-SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204 Query: 226 DTPKK 212 + +K Sbjct: 205 NPSQK 209 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P P +FV NL L ++F V +V+VI T + G+GFV+ ++ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN 326 Query: 307 KEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 +EA AI++ NG L R + V FK + K Sbjct: 327 YDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/70 (32%), Positives = 39/70 (55%) Frame = -2 Query: 442 LTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKE 263 L + L+ LF S ++S +++ T + S GYGFV++ ++AE AI+T NG Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKAINTLNGLR 104 Query: 262 LMGRSINVMF 233 L ++I V + Sbjct: 105 LQTKTIKVSY 114
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 145 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 146 SQYGRIITSRILVDQVTGI-SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204 Query: 226 DTPKK 212 + +K Sbjct: 205 NPSQK 209 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + L+ LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 96 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 97 INTLNGLRLQTKTIKVSY 114 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P P +FV NL L ++F V +V+VI T + G+GFV+ ++ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN 326 Query: 307 KEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 +EA AI++ NG L R + V FK + K Sbjct: 327 YDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 145 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 146 SQYGRIITSRILVDQVTGI-SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204 Query: 226 DTPKK 212 + +K Sbjct: 205 NPSQK 209 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + L+ LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 96 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 97 INTLNGLRLQTKTIKVSY 114 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P P +FV NL L ++F V +V+VI T + G+GFV+ ++ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN 326 Query: 307 KEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 +EA AI++ NG L R + V FK + K Sbjct: 327 YDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A A+ LN L +TIKV +A+P SA + ++V L + + L +LF Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPS-------SASIRDANLYVSGLPKTMTQKELEQLF 145 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRS--INVMFKE 227 + + + ++ T S G GF+ F + EAE AI NG++ G + I V F Sbjct: 146 SQYGRIITSRILVDQVTGI-SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204 Query: 226 DTPKK 212 + +K Sbjct: 205 NPSQK 209 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K + V L + L+ LF S ++S +++ T + S GYGFV++ ++AE A Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKA 96 Query: 286 ISTFNGKELMGRSINVMF 233 I+T NG L ++I V + Sbjct: 97 INTLNGLRLQTKTIKVSY 114 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P P +FV NL L ++F V +V+VI T + G+GFV+ ++ Sbjct: 269 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN 327 Query: 307 KEEAEAAISTFNGKELMGRSINVMFKEDTPKK 212 +EA AI++ NG L R + V FK + K Sbjct: 328 YDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 359
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 46.2 bits (108), Expect = 7e-05 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKV-DFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAS 395 A + LN +L+ R +KV + + + A+ A + VFV NL ++V + L+E+F+ Sbjct: 126 AAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSM 185 Query: 394 TPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 227 V +++ +S G G V+F EA AIS FNG+ L R ++V E Sbjct: 186 AGVVVRADIL--EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 239
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 45.8 bits (107), Expect = 9e-05 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L + + LR +F + ++ V+ + RS GYGF++FS E A A+ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNI-VLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 277 FNGKELMGRSINV 239 NG EL GR + V Sbjct: 324 LNGFELAGRPMRV 336
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 45.8 bits (107), Expect = 9e-05 Identities = 29/85 (34%), Positives = 43/85 (50%) Frame = -2 Query: 490 AVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFS 311 A +A +K VFVGNL +RV L E F + +V ++ + T G+G+V F Sbjct: 276 ASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLT-GVGRGFGYVLFE 334 Query: 310 SKEEAEAAISTFNGKELMGRSINVM 236 + + A+ N ELMGR + VM Sbjct: 335 NTDAVHLALK-LNNSELMGRKLRVM 358
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ +F+G L + L + F + V V+ T +RS G+GFV+F + ++A+ Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRET-KRSRGFGFVTFENVDDAKD 61 Query: 289 AISTFNGKELMGRSINV 239 A+ NGK + GR I V Sbjct: 62 AMMAMNGKSVDGRQIRV 78
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 45.8 bits (107), Expect = 9e-05 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Frame = -2 Query: 565 KNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEK-NVVFVGNLTWRVRSRHLRELFASTP 389 +N++ R ++ + +PK+ P + K N +FVG + LRE F Sbjct: 78 RNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKF- 136 Query: 388 GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKN 209 GV + V+ + +R G+GF++F ++ + A++ + ++MG+ + V E KN Sbjct: 137 GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKN 195 Query: 208 KS 203 ++ Sbjct: 196 QA 197 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 +FVG L W LR F+ V VI T +S G+GFV F Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDC-VIMKDKTTNQSRGFGFVKF 58
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/83 (33%), Positives = 42/83 (50%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 +N +FV NLT+ L+ELF + V ++I T+ G G V F+ E + A Sbjct: 121 ENSIFVRNLTFDCTPEDLKELFGTVGEVVEADII---TSKGHHRGMGTVEFTKNESVQDA 177 Query: 286 ISTFNGKELMGRSINVMFKEDTP 218 IS F+G M R + M ++D P Sbjct: 178 ISKFDGALFMDRKL--MVRQDNP 198 Score = 38.5 bits (88), Expect = 0.014 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGV--QSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 VF+ NL + + + L+++F V VE+ F+ S G+G V + +++E AI Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGF----SRGFGSVIYPTEDEMIRAI 276 Query: 283 STFNGKELMGRSINVMFKEDTPKKN 209 TFNG E+ GR + V +KN Sbjct: 277 DTFNGMEVEGRVLEVREGRFNKRKN 301
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/85 (31%), Positives = 43/85 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VG+L V L + F+S V S+ V T RRS GY +V+F +AE A+ T Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVIT-RRSLGYAYVNFQQPADAERALDT 62 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 N + + I +M+ + P +S Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRS 87 Score = 43.5 bits (101), Expect = 4e-04 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAV--PSAPVEKNVVFVGNLTWRVRSRHLRE 407 A +++ +N LN + + V P+K++ A + NV +V N T L+E Sbjct: 143 ANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV-YVKNFTEDFDDEKLKE 201 Query: 406 LFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKEL-MGRSINV 239 F + S +V+ + +S G+GFV+F + E AEAA+ NGK++ G+S+ V Sbjct: 202 FFEPYGKITSYKVM--SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256 Score = 42.7 bits (99), Expect = 8e-04 Identities = 29/111 (26%), Positives = 57/111 (51%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 AL +N + ++ I++ +++ + P++ + V VF+ NL + ++ + + F++ Sbjct: 59 ALDTMNFDLVRNKPIRIMWSQ---RDPSLRRSGVGN--VFIKNLDRAIDNKAIYDTFSAF 113 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V T S GYGFV F ++E A +I NG L G+ + V Sbjct: 114 GNILSCKVA--TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162 Score = 37.0 bits (84), Expect = 0.041 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V NL + LR F+ + S +V+ T RS G+GFV F++ EA A++ Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVM--TDEEGRSKGFGFVCFNAASEATCAVTE 346 Query: 277 FNGKELMGRSINV 239 NG+ + + + V Sbjct: 347 LNGRVVGSKPLYV 359
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/85 (31%), Positives = 43/85 (50%) Frame = -2 Query: 490 AVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFS 311 A +A +K VFVGNL +++ L E F + +V ++ + T G+G+V F Sbjct: 282 ASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLT-GVGRGFGYVLFE 340 Query: 310 SKEEAEAAISTFNGKELMGRSINVM 236 + + A+ N ELMGR + VM Sbjct: 341 NTDAVHLALK-LNNSELMGRKLRVM 364
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/115 (27%), Positives = 50/115 (43%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A ALK + I+VD A + +K VFVGNL ++V + + F Sbjct: 256 ATQALKRNGAQIADGFRIRVDLASETSSR--------DKRSVFVGNLPYKVEESAIEKHF 307 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVM 236 + +V ++ T G+G+V F + + A+ N ELMGR + VM Sbjct: 308 LDCGSIMAVRIVRDKMT-GIGKGFGYVLFENTDSVHLALK-LNNSELMGRKLRVM 360
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = -2 Query: 535 RTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHT 356 RT ++++A Q ++PS P + +FVG+L+ L LF + +SV+ + Sbjct: 170 RTFRLNWASGATLQSSIPSTP--EFSLFVGDLSPTATEADLLSLFQTR--FKSVKTVRVM 225 Query: 355 TTPRRSAG--YGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKN 209 T P + +GFV F ++E A+ +GK GR++ V + TP+ N Sbjct: 226 TDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA--TPRNN 274 Score = 29.6 bits (65), Expect = 6.6 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Frame = -2 Query: 577 LSALKNLNLSTLNDRTI---KVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRE 407 L+AL N LN+ I +V+ + P P+ VFVG L + LR Sbjct: 323 LNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPT----NTTVFVGGLVPKTTEFQLRS 378 Query: 406 LFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 227 LF + +V + GFV F + +AEA+I G + G I + + Sbjct: 379 LFKPFGPILNVRI-------PNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431 Query: 226 DTPKKNKS 203 + K+ Sbjct: 432 PSSSNAKT 439
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Frame = -2 Query: 562 NLNLSTLNDRTI---KVDFAKPKKKQPAVPSAPVEKN----VVFVGNLTWRVRSRHLREL 404 N+ +STL+ + K+ K+ ++ ++K+ + + NL + + L EL Sbjct: 677 NVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLEL 736 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 F + ++SV V + + G+ FV F+ +EAE A+S G L+GR + + + E Sbjct: 737 FGAFGQLKSVRV--PKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQ 794 Query: 223 TPK 215 P+ Sbjct: 795 DPE 797 Score = 43.9 bits (102), Expect = 3e-04 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = -2 Query: 502 KKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA---- 335 K+ + S VFV NL + + L +LF PG V + P+ S Sbjct: 604 KEDDEIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFV-VATVKTKPDPKNSGKTLS 662 Query: 334 -GYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 G+GFV F +KE+A AIST +G L G + + Sbjct: 663 MGFGFVEFRTKEQANVAISTLDGHVLDGHKLQL 695
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/79 (34%), Positives = 42/79 (53%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 + VFV NL ++V + L+E+F+ V +++ +S G G V+F EA AI Sbjct: 202 STVFVANLDYKVGWKKLKEVFSMAGVVVRADIL--EDKDGKSRGIGIVTFEQSIEAVQAI 259 Query: 283 STFNGKELMGRSINVMFKE 227 S FNG+ L R ++V E Sbjct: 260 SMFNGQLLFDRPMHVKMDE 278
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Frame = -2 Query: 565 KNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEK-NVVFVGNLTWRVRSRHLRELFASTP 389 +N++ R ++ + +PK+ P + K N +FVG + LRE F Sbjct: 78 RNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKF- 136 Query: 388 GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKN 209 GV + V+ + +R G+GF++F ++ + A++ + ++MG+ + V K P+ + Sbjct: 137 GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV--KRAEPRDS 193 Query: 208 KS 203 KS Sbjct: 194 KS 195 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 +FVG L W LR F+ V VI T +S G+GFV F Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDC-VIMKDKTTNQSRGFGFVKF 58
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/59 (42%), Positives = 36/59 (61%) Frame = -2 Query: 415 LRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 L F++ V ++I T +RS G+GFV+FS++E +AI NGKEL GR+I V Sbjct: 3 LHSAFSTYGEVLESKIILDRET-QRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/100 (24%), Positives = 47/100 (47%) Frame = -2 Query: 523 VDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPR 344 +D A+ ++++ + + + NL ++ + +R LF + ++SV V R Sbjct: 682 MDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRV--PKKFDR 739 Query: 343 RSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKED 224 + G+GF F S EAE A+ L+GR + + F + Sbjct: 740 SARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANE 779
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/75 (37%), Positives = 39/75 (52%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL V R L + F++ + + R S GYGFVS+ S E A+AAI Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGR-SKGYGFVSYDSFETADAAIEA 159 Query: 277 FNGKELMGRSINVMF 233 N + LM + I V + Sbjct: 160 MNNQFLMNKPITVSY 174
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR----SAGYGFVSFSSKEEA 296 + +F+ L + + HL+ + + PG V R S GYGFV F +KE A Sbjct: 535 STLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAA 594 Query: 295 EAAISTFNGKELMGRSINVMFKE 227 A+ G E+ G+S+ V F + Sbjct: 595 TKALKALEGFEIDGKSLEVKFAQ 617
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 43.5 bits (101), Expect = 4e-04 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFA--KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 A++ N S LN + I+V ++ P ++ V + VFV NL V + L+++F Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN-------VFVKNLPESVTNAVLQDMFK 133 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S +V T +S GYGFV F ++ A AAI T N + + I V Sbjct: 134 KFGNIVSCKVA--TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++V N+ V LR+ F+ + S +++ +S G+GFV FS+ EEA A+ T Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLM--CDEKGKSKGFGFVCFSTPEEAIDAVKT 363 Query: 277 FNGKELMGRSINVMF---KED 224 F+G+ G+ + V KED Sbjct: 364 FHGQMFHGKPLYVAIAQKKED 384
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/79 (34%), Positives = 42/79 (53%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 + VFV NL ++V + L+E+F+ V +++ +S G G V+F EA AI Sbjct: 203 STVFVANLDYKVGWKKLKEVFSMAGVVVRADIL--EDKDGKSRGIGTVTFEQSIEAVQAI 260 Query: 283 STFNGKELMGRSINVMFKE 227 S FNG+ L R ++V E Sbjct: 261 SMFNGQLLFDRPMHVKMDE 279
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.1 bits (100), Expect = 6e-04 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR----SAGYGFVSFSSKEEAEA 290 VFV NL ++ SR L + F + G +V + + S G+GFV FSSKE AE Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 289 AISTFNGKELMGRSINV 239 A +G L G + + Sbjct: 667 AQKAMDGHVLDGHKLQL 683 Score = 36.6 bits (83), Expect = 0.054 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + + NL + + +++LF + +++V V + R G+ F + S +EAE A+S Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESR--GFAFAEYVSAKEAEHAMSA 762 Query: 277 FNGKELMGRSINVMFKE 227 G L+GR + + + + Sbjct: 763 LQGTHLLGRRLVLQYAQ 779
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ +R FA V+ V++I T S GYGFVSF + Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGV--SKGYGFVSFYN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVESQINFHGKKL 108
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ +R FA V+ V++I T S GYGFVSF + Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGV--SKGYGFVSFFN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVESQINFHGKKL 108
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ +R FA V+ V++I T S GYGFVSF + Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGV--SKGYGFVSFFN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVESQINFHGKKL 108
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V++G L++ VR + ++ F+ + V++ GYGFV F +A+ A+ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDL---------KNGYGFVEFEDSRDADDAVYE 54 Query: 277 FNGKELMGRSINV 239 NGKEL G + V Sbjct: 55 LNGKELCGERVIV 67
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/89 (28%), Positives = 40/89 (44%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 +K ++VG L V R L F + +++ + +R G+ F+ + E+A A Sbjct: 4 DKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYES-QRHRGFAFIEYEQSEDAAA 62 Query: 289 AISTFNGKELMGRSINVMFKEDTPKKNKS 203 AI N EL GR+I V + K S Sbjct: 63 AIDNMNDSELCGRTIRVNLAKPVRVKEDS 91
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 42.7 bits (99), Expect = 8e-04 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 11/125 (8%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAV-----------PSAPVEKNVVFVGNLTW 434 A+ A++ LN S LN + V A+ K ++ V A + +FV NL Sbjct: 271 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 330 Query: 433 RVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMG 254 V L E FA + S +V+ T +S G+GFV FS+ EEA AI+ N + + G Sbjct: 331 SVDDEKLEEEFAPYGTITSAKVM--RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 388 Query: 253 RSINV 239 + + V Sbjct: 389 KPLYV 393 Score = 34.7 bits (78), Expect = 0.21 Identities = 27/111 (24%), Positives = 54/111 (48%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A++ LN + + R ++ +++ + P++ +F+ NL + ++ L + F+ Sbjct: 94 AIEQLNYTPIKGRLCRIMWSQ---RDPSLRKKG--SGNIFIKNLHPDIDNKALYDTFSVF 148 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + S ++ T +S G+GFV F + A+ AI NG L G+ I V Sbjct: 149 GDILSSKIA--TDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/76 (32%), Positives = 36/76 (47%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K V++VG L V + L F + +++ T + G+ FV F E+A AA Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR-GFAFVEFELAEDAAAA 63 Query: 286 ISTFNGKELMGRSINV 239 I N EL GR+I V Sbjct: 64 IDNMNESELFGRTIRV 79
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/76 (32%), Positives = 36/76 (47%) Frame = -2 Query: 466 KNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA 287 K V++VG L V + L F + +++ T + G+ FV F E+A AA Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR-GFAFVEFELAEDAAAA 63 Query: 286 ISTFNGKELMGRSINV 239 I N EL GR+I V Sbjct: 64 IDNMNESELFGRTIRV 79
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ +R FA V+ V++I T S GYGFVSF + Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGV--SKGYGFVSFFN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVESQINFHGKKL 108
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/103 (26%), Positives = 51/103 (49%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A +A+K+LN T+ ++ +KV +A+P + ++ ++V NL + L ++F Sbjct: 139 AQNAIKSLNGVTVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDELEKIF 191 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ T + G FV F+ +EEA+ AIS N Sbjct: 192 GKYGNIVQKNILRDKLTGK-PRGVAFVRFNKREEAQEAISALN 233 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/75 (26%), Positives = 36/75 (48%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + R L LF + + + ++ T S GY FV F+S+ +A+ AI + Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGY-SFGYAFVDFASEIDAQNAIKS 145 Query: 277 FNGKELMGRSINVMF 233 NG + + + V + Sbjct: 146 LNGVTVRNKRLKVSY 160
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V+VG L + VR R L F + + + GYGFV F +A+ A+ Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILI---------KNGYGFVEFEDYRDADDAVYE 55 Query: 277 FNGKELMGRSINV 239 NGKEL+G + V Sbjct: 56 LNGKELLGERVVV 68
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVD-FAKPKKKQPAVPSAP-VEKNVVFVGNLTWRVRSRHLRELFA 398 A+ ++N LN+R + V F P+++ V + VFV N+ + L+ELF Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +SV+VI + +S G+GFV + + E A+ A+ +GK + G+ + V Sbjct: 221 EYGPTESVKVIRDASG--KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/91 (27%), Positives = 43/91 (47%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 K K + P VP +++ NL + L+E F+S + +V+ + G Sbjct: 294 KEKSRPPGVP--------IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG---QGKG 342 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +G V FSS EEA A+ NG+ + + ++V Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.6 bits (83), Expect = 0.054 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKP--KKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFA 398 AL +N +N + ++ +++P + ++ V + +F+ NL + +R L LF+ Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGN-------IFIKNLDKSIDNRALFYLFS 127 Query: 397 STPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 + + S +V+ S GY +V F S A AI NG L R + V Sbjct: 128 AFGNILSCKVV---CDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177 Score = 34.3 bits (77), Expect = 0.27 Identities = 25/97 (25%), Positives = 43/97 (44%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA K ++VG+L V L + F ++ + T R GYG+V+F Sbjct: 8 PAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVT-RSPLGYGYVNF 66 Query: 313 SSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 +AE A++T N + G+ +M+ + + KS Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS 103
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/103 (26%), Positives = 50/103 (48%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A +A+K +N T+ ++ +KV +A+P + ++ ++V NL + L ++F Sbjct: 156 AQNAIKTVNGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDELEKIF 208 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ T R G FV F+ +EEA+ AIS N Sbjct: 209 GKYGNIVQKNILRDKLTGR-PRGVAFVRFNKREEAQEAISALN 250
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 42.0 bits (97), Expect = 0.001 Identities = 26/85 (30%), Positives = 39/85 (45%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N +FVGNLT+ L E F+ V ++I T+ G G V F++ ++ + AI Sbjct: 136 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADII---TSRGHHRGMGTVEFTNSDDVDRAI 192 Query: 283 STFNGKELMGRSINVMFKEDTPKKN 209 ++G M R I V P N Sbjct: 193 RQYDGAFFMDRKIFVRQDNPPPSNN 217 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V V NL V + L+++F V +V S G G VSF ++ AI Sbjct: 238 VIVKNLPASVNWQALKDIFKECGNVAHADV--ELDGDGVSTGSGTVSFYDIKDLHRAIEK 295 Query: 277 FNGKELMGRSINVMFKE 227 +NG + G ++V KE Sbjct: 296 YNGYSIEGNVLDVKSKE 312
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V+VGNL +R R + +LF+ V +++ P R GY FV F +AE AI Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL----KVPPRPPGYAFVEFDDARDAEDAIHG 64 Query: 277 FNGKELMGRSINV 239 +G + G + V Sbjct: 65 RDGYDFDGHRLRV 77
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = -2 Query: 475 PVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEA 296 P +FVG LT +RE ++ + + ++ T +RS G+GFV+FS K E Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDI-IVMRDPTTKRSRGFGFVTFSGKTEV 77 Query: 295 EAAI 284 +AA+ Sbjct: 78 DAAM 81
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/71 (30%), Positives = 34/71 (47%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +++G LT RV + + F ++ V + G+GFV F K +AE A+ Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL---------KNGFGFVEFDDKRDAEDAVHD 55 Query: 277 FNGKELMGRSI 245 NGKEL G + Sbjct: 56 LNGKELGGERV 66
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N +FVG + +V +RE FA V+ V++I T GYGFV FS Sbjct: 39 LPEGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKII--TYRGGICKGYGFVYFSE 96 Query: 307 KEEAEAAIS---TFNGKEL 260 + + + +F GK+L Sbjct: 97 DVDIQTIVDQPISFKGKKL 115
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = -2 Query: 511 KPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIF--HTTTPRRS 338 K K++ + +FVGN+T V + + F ++ + +++ +T TP+ Sbjct: 48 KLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPK-- 105 Query: 337 AGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFK 230 GYG++ F S E A+ NG EL G+ I V K Sbjct: 106 -GYGYIEFESPAYREKALQ-LNGGELKGKKIAVSRK 139
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 + +FV NL ++V + L+E+F+ V+ ++ +S G G V+F EA AI Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADI--KEDKDGKSRGMGTVTFEQAIEAVQAI 281 Query: 283 STFNGKELMGRSINV 239 S FNG+ L R ++V Sbjct: 282 SMFNGQFLFDRPMHV 296
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 + +FV NL ++V + L+E+F+ V+ ++ +S G G V+F EA AI Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADI--KEDKDGKSRGMGTVTFEQAIEAVQAI 290 Query: 283 STFNGKELMGRSINV 239 S FNG+ L R ++V Sbjct: 291 SMFNGQFLFDRPMHV 305
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL+ + +R LF+ + +++ +GFV SK EA+ AI Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV---------KNFGFVHMDSKSEADEAIQN 54 Query: 277 FNGKELMGRSINVMFKEDTPK 215 + L G ++NV + PK Sbjct: 55 LHHYMLNGMAMNVEMSKGKPK 75 Score = 30.4 bits (67), Expect = 3.9 Identities = 26/111 (23%), Positives = 45/111 (40%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A++NL+ LN + V+ +K K P + VGN++ ++ LR F Sbjct: 51 AIQNLHHYMLNGMAMNVEMSKGK---------PKTSTKLHVGNISSSCTNQELRAKFEEY 101 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 V +++ Y FV E+A AIS + G+ ++V Sbjct: 102 GPVVECDIV---------KDYAFVHMERVEDAMEAISGLDNTAFQGKLMSV 143
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Frame = -2 Query: 544 LNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVI 365 +++R K +KKQ VP ++ V N+ ++ R +RELF++ +++V + Sbjct: 800 ISERATKPALTSTRKKQ--VPKKQTTSKIL-VRNIPFQANQREIRELFSTFGELKTVRLP 856 Query: 364 FHTTTPRRSAGYGFVSFSSKEEAEAAISTF-NGKELMGRSI 245 T G+GFV F +K++A+ A + + L GR + Sbjct: 857 KKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 897 Score = 33.9 bits (76), Expect = 0.35 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL ++ R+LFA+ + + F T + +GF+ F S+EEA+AA++ Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF--TKDGKFRKFGFIGFKSEEEAQAALNH 61 Query: 277 FNGKELMGRSINVMF 233 F+ + I V F Sbjct: 62 FHRSFIDTTRITVEF 76
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 41.2 bits (95), Expect = 0.002 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVG+L + + + E+F V+ V ++ R+S G GFV +SSKE A AAI Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLM--RDEYRQSRGCGFVKYSSKETAMAAIDG 270 Query: 277 FNGKELM---GRSINVMFKEDTPKKNK 206 NG M + + V F E PK+ K Sbjct: 271 LNGTYTMRGCNQPLIVRFAE--PKRPK 295
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = -2 Query: 544 LNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVI 365 +++R K +KKQ VP ++ V N+ ++ SR +RELF++ +++V + Sbjct: 808 ISERATKPAVTLARKKQ--VPRKQTTSKIL-VRNIPFQAHSREIRELFSTFGELKTVRLP 864 Query: 364 FHTTTPRRSAGYGFVSFSSKEEAEAAISTF-NGKELMGRSI 245 T G+GFV F +K++A+ A + + L GR + Sbjct: 865 KKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL ++ R+LFA+ + + F T + +GF+ F S+EEA+ A Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF--TKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 277 FNGKELMGRSINVMF 233 FN + I V F Sbjct: 62 FNKSFIDTSRITVEF 76
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/68 (30%), Positives = 37/68 (54%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P+ P + +F+G L++ LRE F G + V+ +RS G+GFV++ S Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQW-GTLTDCVVMRDPNSKRSRGFGFVTYLST 65 Query: 304 EEAEAAIS 281 +E +AA++ Sbjct: 66 DEVDAAMT 73 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Frame = -2 Query: 550 STLNDRTIKVD--FAKPKK----KQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTP 389 + + R KVD +PK+ + + P A + +FVG + HLRE F Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYG 129 Query: 388 GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 ++ +E++ + ++ G+ FV+F + + + Sbjct: 130 KIEVIEIMTDRGSGKK-RGFAFVTFEDHDSVDKIV 163
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V++G L+++ R R + F + V++ GYGFV F +A+ A+ Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL---------KNGYGFVEFDDLRDADDAVYE 54 Query: 277 FNGKELMGRSINV 239 NGK+L G + V Sbjct: 55 LNGKDLCGERVIV 67
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 40.4 bits (93), Expect = 0.004 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 502 KKQPAVPSAPV--EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 KK+P A V +K + + NL+++ L+ +FA V +EV + G+ Sbjct: 98 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAV--LEVNIPRKPDGKMRGF 155 Query: 328 GFVSFSSKEEAEAAISTFNGKELMGRSINV 239 GFV F + EA A+ N KE+ GR++ V Sbjct: 156 GFVQFKNLLEAGKALKGMNMKEIKGRTVAV 185 Score = 37.7 bits (86), Expect = 0.024 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA--- 287 +FVG L RS L ELF+ V+ V+ + + G+G+V+FS E+ + A Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGS-KACRGFGYVTFSMLEDVQRALKE 63 Query: 286 ISTFNGKELMGRSINVMFKEDTPKKNKS 203 I+TF G ++ + T +K K+ Sbjct: 64 ITTFEGCKINVTVAKKKLRNKTKEKGKN 91 Score = 37.0 bits (84), Expect = 0.041 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Frame = -2 Query: 538 DRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFH 359 D+ ++V KK+ +PS E VF+ NL++ L EL ++ V ++ H Sbjct: 313 DKAVQVS----NKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLH 368 Query: 358 TTTPRRSAGYGFVSFSSKEEAEAAI------STFNGKELMGRSINV 239 T S G F F ++E A+ + + G +L GR + V Sbjct: 369 PDT-EHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKV 413
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V++G L+++ R R + F + V++ GYGFV F +A+ A+ Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL---------KNGYGFVEFDDLRDADDAVYE 54 Query: 277 FNGKELMGRSINV 239 NGK+L G + V Sbjct: 55 LNGKDLCGERVIV 67
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Frame = -2 Query: 505 KKKQPAVPSAPVEKNVVFVGNLTWRVRS--RHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 ++ P++P++P++ + ++V NL V + L +LF+ + S + + + S G Sbjct: 368 RESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGI-SKG 426 Query: 331 YGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 227 YGFV+F E A A T NG + + I V F E Sbjct: 427 YGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAE 461
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 40.0 bits (92), Expect = 0.005 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 23/128 (17%) Frame = -2 Query: 574 SALKNLNLSTLNDRTIKVDFAKPKKK-----------------------QPAVPSAPVEK 464 SAL + DR I+V A PK K QP A Sbjct: 243 SALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTAN 302 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 + VFVG L+ V L+ LF + E+++ P + G GFV F +++ AE AI Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFG-----EIVYVKIPPGK--GCGFVQFVNRQSAEIAI 355 Query: 283 STFNGKEL 260 + G L Sbjct: 356 NQLQGYPL 363 Score = 34.7 bits (78), Expect = 0.21 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVG+L+ V + LFAS I S GYGFV F+ + + ++A++ Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247 Query: 277 FNGKELMGRSINV 239 G+ R I V Sbjct: 248 MQGQICGDRPIRV 260
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/108 (25%), Positives = 47/108 (43%) Frame = -2 Query: 529 IKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTT 350 + V++A P ++ P + V+FV NL V L + F+ ++ V Sbjct: 321 VTVEWADPVEEPD--PEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-------- 370 Query: 349 PRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 ++ Y FV F + A A+ NGKE+ G I ++ + KK K Sbjct: 371 -KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 417
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/81 (30%), Positives = 41/81 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL + + + ELF+S ++SV V + + G+ FV F +EAE A+ Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRV--PKKFDKSARGFAFVEFLLPKEAENAMDQ 811 Query: 277 FNGKELMGRSINVMFKEDTPK 215 G L+GR + + F E P+ Sbjct: 812 LQGVHLLGRRLVMEFVEQDPE 832 Score = 37.4 bits (85), Expect = 0.032 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPG--VQSVEVIFHTTTPRR--SAGYGFVSFSSKEEAEA 290 +F+ NL + S+ L E F G V V+ P + S G+GF F +KE+A A Sbjct: 653 IFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANA 712 Query: 289 AISTFNGKELMGRSINV 239 IS G L G + + Sbjct: 713 VISAMEGTILDGHKLQL 729
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P P + +F+G L++ LRE F G + V+ +RS G+GFV++S Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKW-GTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 304 EEAEAAI 284 EE +AA+ Sbjct: 87 EEVDAAM 93
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P P + +F+G L++ LRE F G + V+ +RS G+GFV++S Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKW-GTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 304 EEAEAAI 284 EE +AA+ Sbjct: 87 EEVDAAM 93
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/93 (25%), Positives = 42/93 (45%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P + V+FV NL V L + F+ ++ V ++ Y F+ F + Sbjct: 331 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---------KKLKDYAFIHFDER 381 Query: 304 EEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 + A A+ NGK+L G +I ++F + +K K Sbjct: 382 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 414
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P P + +F+G L++ LRE F G + V+ +RS G+GFV++S Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKW-GTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 304 EEAEAAI 284 EE +AA+ Sbjct: 87 EEVDAAM 93
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Frame = -2 Query: 502 KKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGF 323 +++ A P A V +FVG + HLRE F ++S E+I + ++ G+GF Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKK-RGFGF 145 Query: 322 VSFSSKEEAEAAI----STFNG 269 V+F+ + + + T NG Sbjct: 146 VTFNDHDPVDKIVLQKYHTING 167
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 362 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 419 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 420 DVDVQKIVGSQIHFHGKKL 438 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 254 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 255 DVDVQKIVGSQIHFHGKKL 273 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVGSQIHFHGKKL 108
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVGSQIHFHGKKL 108
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/93 (25%), Positives = 42/93 (45%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P + V+FV NL V L + F+ ++ V ++ Y F+ F + Sbjct: 241 PEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV---------KKLKDYAFIHFDER 291 Query: 304 EEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 + A A+ NGK+L G +I ++F + +K K Sbjct: 292 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 324
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/68 (32%), Positives = 36/68 (52%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P P + +F+G L++ LRE F G + V+ +RS G+GFV++S Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQW-GKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 304 EEAEAAIS 281 EE +A++S Sbjct: 79 EEVDASMS 86 Score = 32.7 bits (73), Expect = 0.78 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Frame = -2 Query: 550 STLNDRTIKVD--FAKPKK----KQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTP 389 ++++ R KVD +PK+ + A P A + +FVG + HLR+ F Sbjct: 83 ASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYG 142 Query: 388 GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 ++++EV+ + ++ G+ FV+F + + + Sbjct: 143 KIETIEVMEDRQSGKK-RGFAFVTFDDHDTVDKIV 176
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 254 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 255 DVDVQKIVGSQIHFHGKKL 273 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVGSQIHFHGKKL 108
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 39.3 bits (90), Expect = 0.008 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = -2 Query: 493 PAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSF 314 PA P+ + N +FVG LRE F V+ V+++ + +S GYGF++F Sbjct: 57 PAPPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMV--KSLDGQSKGYGFITF 114 Query: 313 SSKEEAEAAISTFNGKELMGRS 248 ++++AE I K+L RS Sbjct: 115 ETEDQAE-EIRKLTPKQLEFRS 135
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/93 (25%), Positives = 42/93 (45%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P + V+FV NL V L + F+ ++ V ++ Y F+ F + Sbjct: 331 PEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV---------KKLKDYAFIHFDER 381 Query: 304 EEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 + A A+ NGK+L G +I ++F + +K K Sbjct: 382 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 414
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/68 (32%), Positives = 36/68 (52%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 305 P P + +F+G L++ LRE F G + V+ +RS G+GFV++S Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQW-GKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 304 EEAEAAIS 281 EE +A++S Sbjct: 79 EEVDASMS 86 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Frame = -2 Query: 550 STLNDRTIKVD--FAKPKK----KQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTP 389 ++++ R KVD +PK+ + A P A + +FVG + HLR+ S Sbjct: 83 ASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYG 142 Query: 388 GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI----STFNG 269 ++++EV+ + ++ G+ FV+F + + + T NG Sbjct: 143 KIETIEVMEDRQSGKK-RGFAFVTFDDHDTVDKIVVQKYHTING 185
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA---GYGFVSF 314 P VE ++FV + + + FA ++++ H RR+ GY V + Sbjct: 66 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI----HLNLDRRTGYLKGYTLVEY 121 Query: 313 SSKEEAEAAISTFNGKELMGRSINV 239 + +EA+AA+ NG++LMG+ I+V Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISV 146
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA---GYGFVSF 314 P VE ++FV + + + FA ++++ H RR+ GY V + Sbjct: 66 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI----HLNLDRRTGYLKGYTLVEY 121 Query: 313 SSKEEAEAAISTFNGKELMGRSINV 239 + +EA+AA+ NG++LMG+ I+V Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISV 146
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR----SAGYGFVSFSSKEEAEA 290 +F+ NL ++ S+ L + F G +V ++ S G+GFV F +KE+A A Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATA 701 Query: 289 AISTFNGKELMGRSINV 239 IS +G + G I + Sbjct: 702 VISAMDGTVIDGHKIQL 718 Score = 34.3 bits (77), Expect = 0.27 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL + + + ELF S ++SV V + + G+ FV F +EAE A+ Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRV--PKKFDKSARGFAFVEFVLPKEAENAMDQ 797 Query: 277 FNGKELMGRSI 245 G L+GR + Sbjct: 798 LQGVHLLGRRL 808
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ + F V+ V++I + T S GYGFVSF + Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGV--SKGYGFVSFVN 89 Query: 307 KEEAEAAIST---FNGKEL 260 + + + + F+GK+L Sbjct: 90 DVDVQKIVGSQIHFHGKKL 108
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/75 (24%), Positives = 38/75 (50%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N +FVG + ++ LR+ F+ V+ V+++ S GYGF++F ++E+A+ + Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIV--NDRAGVSKGYGFITFETQEDAQKIL 90 Query: 283 STFNGKELMGRSINV 239 + +N+ Sbjct: 91 QEAEKLNYKDKKLNI 105
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 490 AVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFS 311 A P +P + +F+G L+W+ LRE F V+ V+ T +RS G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT-KRSRGFGFVTFM 69 Query: 310 SKEEAEAAIS 281 + + ++ Sbjct: 70 DQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 490 AVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFS 311 A P +P + +F+G L+W+ LRE F V+ V+ T +RS G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT-KRSRGFGFVTFM 69 Query: 310 SKEEAEAAIS 281 + + ++ Sbjct: 70 DQAGVDKVLA 79
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 490 AVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFS 311 A P +P + +F+G L+W+ LRE F V+ V+ T +RS G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT-KRSRGFGFVTFM 69 Query: 310 SKEEAEAAIS 281 + + ++ Sbjct: 70 DQAGVDKVLA 79
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 38.9 bits (89), Expect = 0.011 Identities = 25/84 (29%), Positives = 43/84 (51%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 +V L+ R+ L+ LF+ V +V+ + +P YGFV+ S+ EEA I+ Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARC-YGFVTMSTAEEATKCINHL 467 Query: 274 NGKELMGRSINVMFKEDTPKKNKS 203 + EL G+ I+V ++ P K+ Sbjct: 468 HKTELHGKMISVEKAKNEPVGKKT 491
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 38.9 bits (89), Expect = 0.011 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%) Frame = -2 Query: 520 DFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFH----TT 353 D P + A+ V +FV NL + S L E F G +V + Sbjct: 596 DSKTPSSEATAIDGPTVS---IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNS 652 Query: 352 TPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMF---KEDTPKKNK 206 + S G+GF+ F +KE+A A I+ +G + G I + + PK +K Sbjct: 653 DKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSK 704 Score = 37.0 bits (84), Expect = 0.041 Identities = 23/77 (29%), Positives = 38/77 (49%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL + + + ELF+S ++SV V + + G+ FV F EAE A+ Sbjct: 714 IIVKNLPFEATRKDVFELFSSFGQLKSVRV--PKKFDKSARGFAFVEFLLPSEAENAMDQ 771 Query: 277 FNGKELMGRSINVMFKE 227 G L+GR + + + E Sbjct: 772 LQGVHLLGRRLVMQYAE 788
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/75 (25%), Positives = 38/75 (50%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N +FVG + ++ LR+ F+ V+ V+++ S GYGFV+F ++E+A+ + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIV--NDRAGVSKGYGFVTFETQEDAQKIL 90 Query: 283 STFNGKELMGRSINV 239 + +N+ Sbjct: 91 QEAEKLNYKDKKLNI 105
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/75 (25%), Positives = 38/75 (50%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N +FVG + ++ LR+ F+ V+ V+++ S GYGFV+F ++E+A+ + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIV--NDRAGVSKGYGFVTFETQEDAQKIL 90 Query: 283 STFNGKELMGRSINV 239 + +N+ Sbjct: 91 QEAEKLNYKDKKLNI 105
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/77 (25%), Positives = 41/77 (53%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L+E+F ++ + +S GY F+ F+S E+A+ Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ-----NQNGKSKGYAFIEFASFEDAKE 538 Query: 289 AISTFNGKELMGRSINV 239 A+++ N +E+ GR+I + Sbjct: 539 ALNSCNKREIEGRAIRL 555
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/77 (25%), Positives = 41/77 (53%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L+E+F ++ + +S GY F+ F+S E+A+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ-----NQNGKSKGYAFIEFASFEDAKE 537 Query: 289 AISTFNGKELMGRSINV 239 A+++ N +E+ GR+I + Sbjct: 538 ALNSCNKREIEGRAIRL 554
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/77 (25%), Positives = 41/77 (53%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L+E+F ++ + +S GY F+ F+S E+A+ Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ-----NQNGKSKGYAFIEFASFEDAKE 539 Query: 289 AISTFNGKELMGRSINV 239 A+++ N +E+ GR+I + Sbjct: 540 ALNSCNKREIEGRAIRL 556
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 38.5 bits (88), Expect = 0.014 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%) Frame = -2 Query: 475 PVEKNVVFVGNLTWRVRSRHLRELF-ASTPGVQSVEV----------IFHTTTPRRSAGY 329 P+ N ++V L+ + + L+E+F A P + V I RR G+ Sbjct: 201 PLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGF 260 Query: 328 GFVSFSSKEEAEAAISTFNGKELMGRSI---NVMFKED 224 GFVSF++ E+ AI NGK++ ++ + +F+ED Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 38.5 bits (88), Expect = 0.014 Identities = 26/100 (26%), Positives = 48/100 (48%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+K+LN T+ ++ +KV +A+P + ++ ++V NL + L +F Sbjct: 167 AIKSLNGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKY 219 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ T + G FV F+ +EEA+ AIS N Sbjct: 220 GMIVQKNILRDKLTGK-PRGVAFVRFNKREEAQEAISALN 258 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/75 (24%), Positives = 36/75 (48%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + R L LF + + + ++ T S GY FV F+++ +++ AI + Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-SFGYAFVDFAAETDSQRAIKS 170 Query: 277 FNGKELMGRSINVMF 233 NG + + + V + Sbjct: 171 LNGITVRNKRLKVSY 185
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 38.5 bits (88), Expect = 0.014 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -2 Query: 484 PSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR---SAGYGFVSF 314 P VE ++FV ++ + ++E F ++++ H RR S GY V + Sbjct: 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI----HLNLDRRTGFSKGYALVEY 121 Query: 313 SSKEEAEAAISTFNGKELMGRSINV 239 + ++A AA NG E+MG++I V Sbjct: 122 ETHKQALAAKEALNGAEIMGQTIQV 146
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 38.1 bits (87), Expect = 0.019 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = -2 Query: 451 VGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + NL+++ LR F + V + R+S G+GFV F + +AE A+ + Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIP-RDKYSRQSKGFGFVRFYERRDAEHALDRTD 81 Query: 271 GKELMGRSINV-MFKEDTPKKNK 206 GK + GR + V + K D P + Sbjct: 82 GKLVDGRELRVTLAKYDRPSDER 104
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 38.1 bits (87), Expect = 0.019 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 487 VPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSS 308 +P + N VFVG + R+ +R F V+ V++I T S GYGFVSF Sbjct: 28 LPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGV--SKGYGFVSFLD 85 Query: 307 KEEAEAAIS---TFNGKEL 260 + + + + +GK L Sbjct: 86 NVDVQKIVESQISVHGKRL 104
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.019 Identities = 26/100 (26%), Positives = 47/100 (47%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+K LN T+ ++ +KV +A+P + ++ ++V NL + L +F Sbjct: 184 AIKVLNGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKY 236 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ T R G FV ++ +EEA+ AIS N Sbjct: 237 GSIVQKNILRDKLTGR-PRGVAFVRYNKREEAQEAISALN 275 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + R L LF + + + ++ T S GY FV F+S+ +++ AI Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY-SFGYAFVDFTSEMDSQRAIKV 187 Query: 277 FNGKELMGRSINVMF 233 NG + + + V + Sbjct: 188 LNGITVRNKRLKVSY 202
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.019 Identities = 26/100 (26%), Positives = 47/100 (47%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST 392 A+K LN T+ ++ +KV +A+P + ++ ++V NL + L +F Sbjct: 182 AIKVLNGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKY 234 Query: 391 PGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFN 272 + ++ T R G FV ++ +EEA+ AIS N Sbjct: 235 GSIVQKNILRDKLTGR-PRGVAFVRYNKREEAQEAISALN 273 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V L + R L LF + + + ++ T S GY FV F+S+ +++ AI Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY-SFGYAFVDFTSEMDSQRAIKV 185 Query: 277 FNGKELMGRSINVMF 233 NG + + + V + Sbjct: 186 LNGITVRNKRLKVSY 200
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 38.1 bits (87), Expect = 0.019 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = -2 Query: 520 DFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR 341 D +KK+ +PS E VF+ NL++ L E+ ++ V V+ H T Sbjct: 305 DVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT-EH 363 Query: 340 SAGYGFVSFSSKEEAEAAISTFN------GKELMGRSINV 239 S G F F ++E A+ ++ + G +L GR + V Sbjct: 364 SKGCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKV 403 Score = 36.2 bits (82), Expect = 0.070 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Frame = -2 Query: 553 LSTLNDRTIKVDFAKPKKKQPAVPSAPV--EKNVVFVGNLTWRVRSRHLRELFASTPGVQ 380 L + T K + A+ KK+P A V +K + + NL+++ L+ +F V Sbjct: 81 LRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTV- 139 Query: 379 SVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 +EV + G+ FV F + EA A+ N KE+ GR++ V Sbjct: 140 -LEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAV 185 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAA--- 287 +FVG L RS L ELF+ V+ V+ + + G+G+V+FS E+ + A Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGS-KACRGFGYVTFSMLEDVQRALKE 63 Query: 286 ISTFNG 269 I+TF G Sbjct: 64 ITTFEG 69
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 38.1 bits (87), Expect = 0.019 Identities = 26/99 (26%), Positives = 44/99 (44%) Frame = -2 Query: 514 AKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA 335 A P+ + +P+A V KN+ F ++ L ++F + + +H Sbjct: 221 APPEPDEETIPTAIVIKNIPF------SLKKEVLFKVFTALDIPRPYAFNYHFDNGV-FR 273 Query: 334 GYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTP 218 G F +F S EEA+ + NG E+ GR + V +K P Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLP 312
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 37.7 bits (86), Expect = 0.024 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L+E+F ++ + +S GY F+ F+S E+A+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ-----NQQGKSKGYAFIEFASFEDAKE 537 Query: 289 AISTFNGKELMGRSINV 239 A+++ N E+ GR+I + Sbjct: 538 ALNSCNKMEIEGRTIRL 554
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 37.7 bits (86), Expect = 0.024 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V+VG++++ ++ +R F ++S+ + + T + G+ FV + E A+ A+ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHK-GFAFVEYEIPEGAQLALEQ 190 Query: 277 FNGKELMGRSINVMFKEDTPK 215 NG + GR+I V + P+ Sbjct: 191 MNGALMGGRNIKVGRPSNMPQ 211 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Frame = -2 Query: 571 ALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEK----NVVFVGNLTWRVRSRHLREL 404 AL+ +N + + R IKV + V E+ N ++V ++ + ++ + Sbjct: 187 ALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSV 246 Query: 403 FASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 F + + ++ T+ GYGF+ +++K+ + AI++ N +L G+ + V Sbjct: 247 FEAFGPILYCKLA-QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 37.4 bits (85), Expect = 0.032 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 + V NL + + + ELF S ++SV V + + G+ FV F +EAE A+ Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRV--PKKFDKSARGFAFVEFLLPKEAENAMDQ 822 Query: 277 FNGKELMGRSINVMFKED 224 +G L+GR + + + E+ Sbjct: 823 LHGVHLLGRRLVMQYAEE 840 Score = 35.8 bits (81), Expect = 0.092 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR----SAGYGFVSFSSKEEAEA 290 +F+ NL + +++L + F G +V + S G+GFV F +KE+A A Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724 Query: 289 AISTFNGKELMGRSINV 239 I+ +G + G I + Sbjct: 725 VIAAMDGTVIDGHKIQL 741
>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic| region Length = 668 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -2 Query: 334 GYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 G F +F++ EE I++ NGKE+ GR + V +K+ P+ + Sbjct: 127 GLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQAER 169
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 37.4 bits (85), Expect = 0.032 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -2 Query: 454 FVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 275 +V L+ R+ L+ LF+ V +V+ + +P YGFV+ S+ EEA I+ Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARC-YGFVTMSTAEEATKCINHL 489 Query: 274 NGKELMGRSINVMFKEDTP 218 + EL G+ I+V + P Sbjct: 490 HKTELHGKMISVEKAKSEP 508
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 37.4 bits (85), Expect = 0.032 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR-----SAGYGFVSFSSKEEAE 293 ++V NL + + +++F G S VI P+R S G+GFV F K A Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSA-VIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679 Query: 292 AAISTFNGKELMGRSINV 239 AA+ NG L G + + Sbjct: 680 AAMHAMNGFVLDGHKLEI 697
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 37.4 bits (85), Expect = 0.032 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L+E+F ++ + +S GY F+ F+S E+A+ Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ-----NPHGKSKGYAFIEFASFEDAKE 540 Query: 289 AISTFNGKELMGRSINV 239 A+++ N E+ GR+I + Sbjct: 541 ALNSCNKMEIEGRTIRL 557
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 37.0 bits (84), Expect = 0.041 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = -2 Query: 502 KKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGF 323 +++ A P A V +FVG + HLRE F + S+E+I + ++ G+ F Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKK-RGFAF 145 Query: 322 VSFSSKEEAEAAI----STFNG 269 V+F + + + T NG Sbjct: 146 VTFDDHDPVDKIVLQKYHTING 167
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 36.6 bits (83), Expect = 0.054 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG----YGFVSFSSKEEAEA 290 +FVGNL +V L ELF V V++ P+ G + FV+F + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKI------PKDKDGKPKQFAFVNFKHEVSVPY 65 Query: 289 AISTFNGKELMGRSINVMFK 230 A++ NG +L GR I + F+ Sbjct: 66 AMNLLNGIKLFGRPIKIQFR 85
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 36.6 bits (83), Expect = 0.054 Identities = 19/80 (23%), Positives = 42/80 (52%) Frame = -2 Query: 460 VVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 VV++G++ + + +L ++ V +++++F T R S GY F+ F E + +A+ Sbjct: 19 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR-SKGYAFIEFRDLESSASAVR 77 Query: 280 TFNGKELMGRSINVMFKEDT 221 NG +L R + + ++ Sbjct: 78 NLNGYQLGSRFLKCGYSSNS 97
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 36.6 bits (83), Expect = 0.054 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG----YGFVSFSSKEEAEA 290 +FVGNL +V L ELF V V++ P+ G + FV+F + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKI------PKDKDGKLKQFAFVNFKHEVSVPY 65 Query: 289 AISTFNGKELMGRSINVMFK 230 A++ NG +L GR I + F+ Sbjct: 66 AMNLLNGIKLFGRPIKIQFR 85
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 36.6 bits (83), Expect = 0.054 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+G L W +LRE F V ++++ T RS G+GF+SF + + T Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT-GRSRGFGFLSFEKPSSVDEVVKT 219
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 36.2 bits (82), Expect = 0.070 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG----YGFVSFSSKEEAEA 290 +FVGNL +V L ELF V V++ P+ G + FV+F + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKI------PKDKDGKPKQFAFVNFKHEVSVPY 65 Query: 289 AISTFNGKELMGRSINVMFK 230 A++ NG +L GR I + F+ Sbjct: 66 AMNLLNGIKLYGRPIKIQFR 85
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 36.2 bits (82), Expect = 0.070 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 V++G L R R + F + V + G+GFV F + +A+ A+ Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIM---------KNGFGFVDFQDQRDADDAVHD 54 Query: 277 FNGKELMGRSINVMF 233 NGKEL G + + F Sbjct: 55 LNGKELCGERVILEF 69
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 36.2 bits (82), Expect = 0.070 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 +F+G L+W+ LR+ F+ ++ V+ TT +RS G+GFV+F+ + + Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT-KRSRGFGFVTFADPASVDKVL 79
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 36.2 bits (82), Expect = 0.070 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 +F+G L+W+ LR+ F+ ++ V+ TT +RS G+GFV+F+ + + Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT-KRSRGFGFVTFADPASVDKVL 79
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 +F+G L++ LR + G + V+ +RS G+GFV+FSS E +AA++ Sbjct: 23 LFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80 Score = 35.4 bits (80), Expect = 0.12 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = -2 Query: 502 KKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGF 323 +++ P A V +FVG + HLR+ F + ++E+I + ++ G+GF Sbjct: 99 REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK-RGFGF 157 Query: 322 VSFSSKEEAEAAI----STFNG 269 V+F + + + T NG Sbjct: 158 VTFDDHDPVDKIVLQKYHTING 179
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 35.8 bits (81), Expect = 0.092 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -2 Query: 529 IKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST-PGVQSVEVIFHTT 353 I VD+A+P+ + + V+ +++V NL + + F S PG +VE + Sbjct: 211 IAVDWAEPEVEVDEDTMSSVK--ILYVRNLMLSTSEEMIEKEFNSIKPG--AVERV---- 262 Query: 352 TPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPK 215 ++ Y FV FS++E+A A+ NGK L G I V + K Sbjct: 263 --KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 306 Score = 32.3 bits (72), Expect = 1.0 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = -2 Query: 493 PAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVS 317 P + P E+ +F+G L + L L + + ++ R GY FV+ Sbjct: 45 PGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNR--GYAFVT 102 Query: 316 FSSKEEAEAAISTFNGKELM-GRSINVMFKED 224 FS+K+EA+ AI N E+ GR + V D Sbjct: 103 FSNKQEAKNAIKQLNNYEIRNGRLLGVCASVD 134
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 +F+G L++ LR + G + V+ +RS G+GFV+FSS E +AA++ Sbjct: 11 LFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68 Score = 35.4 bits (80), Expect = 0.12 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = -2 Query: 502 KKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGF 323 +++ P A V +FVG + HLR+ F + ++E+I + ++ G+GF Sbjct: 87 REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK-RGFGF 145 Query: 322 VSFSSKEEAEAAI----STFNG 269 V+F + + + T NG Sbjct: 146 VTFDDHDPVDKIVLQKYHTING 167
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.8 bits (81), Expect = 0.092 Identities = 19/84 (22%), Positives = 42/84 (50%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVG + + L LF+ + S+++I+ T + GYGF+S+ +A I Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPN-GYGFISYPLGSQASLCIKE 255 Query: 277 FNGKELMGRSINVMFKEDTPKKNK 206 NG+ + G ++ + + + ++ + Sbjct: 256 LNGRTVNGSTLFINYHVERKERER 279 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -2 Query: 334 GYGFVSFSSKEEAEAAISTFNG 269 GYGF+ + E+A AAI TFNG Sbjct: 382 GYGFIKLINHEQALAAIETFNG 403
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 35.8 bits (81), Expect = 0.092 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Frame = -2 Query: 457 VFVGNL-TWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 VF+GNL T V+ + +F+ V V GY FV +S++ A AA+ Sbjct: 23 VFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVL 73 Query: 280 TFNGKELMGRSINVMF----KEDTPK 215 NG+ L G+++++ K D PK Sbjct: 74 GENGRVLAGQTLDINMAGEPKPDRPK 99
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 35.8 bits (81), Expect = 0.092 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -2 Query: 529 IKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFAST-PGVQSVEVIFHTT 353 I VD+A+P+ + + V+ +++V NL + + F S PG +VE + Sbjct: 211 IAVDWAEPEVEVDEDTMSSVK--ILYVRNLMLSTSEEMIEKEFNSIKPG--AVERV---- 262 Query: 352 TPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPK 215 ++ Y FV FS++E+A A+ NGK L G I V + K Sbjct: 263 --KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 306 Score = 34.3 bits (77), Expect = 0.27 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Frame = -2 Query: 493 PAVPSAPVEKNV-VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVS 317 P S P E+ +F+G L + L L + + ++ R GY FV+ Sbjct: 45 PGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNR--GYAFVT 102 Query: 316 FSSKEEAEAAISTFNGKEL-MGRSINV--------MFKEDTPKKNK 206 FS+K+EA+ AI N E+ GR + V +F+ PK K Sbjct: 103 FSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKK 148
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 35.8 bits (81), Expect = 0.092 Identities = 31/124 (25%), Positives = 49/124 (39%) Frame = -2 Query: 580 ALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELF 401 A SAL +LN + DR ++VD Q K VFVGNL + L F Sbjct: 239 ARSAL-SLNGTMFMDRHLRVDSVSHPMPQDT-------KRCVFVGNLAFEAEEEPLWRYF 290 Query: 400 ASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDT 221 + V ++ T G+ ++ F + A+ K GR++ +M + T Sbjct: 291 GDCGSIDYVRIVRDPKT-NLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKST 349 Query: 220 PKKN 209 K+ Sbjct: 350 KPKS 353
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 35.4 bits (80), Expect = 0.12 Identities = 20/89 (22%), Positives = 41/89 (46%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E + + NL++ L E+F ++ + + GY F+ F+S E+A+ Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIKVPQ-----NPHGKPKGYAFIEFASFEDAKE 538 Query: 289 AISTFNGKELMGRSINVMFKEDTPKKNKS 203 A+++ N E+ GR+I + + + S Sbjct: 539 ALNSCNKMEIEGRTIRLELQGSNSRSQPS 567 Score = 30.4 bits (67), Expect = 3.9 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Frame = -2 Query: 514 AKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLR----ELFASTPGVQSVEVIFHTTTP 347 A KKQ S P +F+GNL L+ ELFA V T T Sbjct: 291 APEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKN---DLAVVDVRTGTN 347 Query: 346 RRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 239 R+ +G+V F S E+ E A+ G ++ G I + Sbjct: 348 RK---FGYVDFESAEDLEKALE-LTGLKVFGNEIKL 379
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 35.4 bits (80), Expect = 0.12 Identities = 23/84 (27%), Positives = 38/84 (45%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVGNL V L + F+ P + +V+ ++ G+GFVSF ++ A Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVV--RDREGKTRGFGFVSFKDSDQFLKAWRE 89 Query: 277 FNGKELMGRSINVMFKEDTPKKNK 206 NGK + R + + K N+ Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNE 113
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 35.4 bits (80), Expect = 0.12 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%) Frame = -2 Query: 493 PAVPSAPVEKNV------------VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTT 350 P P A E N+ F+GNL + V ++E F + +V + + Sbjct: 74 PTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREPSN 132 Query: 349 PRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 P R G+G+ F + +A+S N + L R I V + K++ Sbjct: 133 PERLKGFGYAEFEDLDSLLSALS-LNEESLGNRRIRVDVADQAQDKDR 179
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +F+GNL + +R LF V ++I YGFV K AE AI Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRN 54 Query: 277 FNGKELMGRSINVMFKEDTPKKNKS 203 + +L G +INV KNKS Sbjct: 55 LHHYKLHGVNINV-----EASKNKS 74
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.0 bits (79), Expect = 0.16 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 13/105 (12%) Frame = -2 Query: 487 VPSAPVEKN--------VVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAG 332 VPS+ V K +FV ++ V L + F++ ++ V+ T +RS G Sbjct: 10 VPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTN--KRSRG 67 Query: 331 YGFVSFSSKEEAEAAI-----STFNGKELMGRSINVMFKEDTPKK 212 +GFVSF+ +++ + A+ + FNG L +++ + D KK Sbjct: 68 FGFVSFAVEDDTKEALAKARKTKFNGHIL---RVDIAKRRDRSKK 109
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = -2 Query: 430 VRSRHLRELFASTPGVQSVEVIFHTTTP------RRSAGYGFVSFSSKEEAEAAISTFNG 269 V+ ++R L ST + +E F+ P ++ Y FV FS++E+A A+ NG Sbjct: 230 VKILYVRNLMLST-SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNG 288 Query: 268 KELMGRSINVMFKEDTPK 215 K L G I V + K Sbjct: 289 KVLDGSPIEVTLAKPVDK 306
>RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (RBP-MS)| (HEart, RRM Expressed Sequence) (Hermes) Length = 197 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/67 (34%), Positives = 31/67 (46%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E +FV L ++ R L LF G + + + P GFVSF S+ EAEA Sbjct: 22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP-----VGFVSFDSRSEAEA 76 Query: 289 AISTFNG 269 A + NG Sbjct: 77 AKNALNG 83
>RBPMS_HUMAN (Q93062) RNA-binding protein with multiple splicing (RBP-MS)| Length = 196 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/67 (34%), Positives = 31/67 (46%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 E +FV L ++ R L LF G + + + P GFVSF S+ EAEA Sbjct: 22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP-----VGFVSFDSRSEAEA 76 Query: 289 AISTFNG 269 A + NG Sbjct: 77 AKNALNG 83
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 35.0 bits (79), Expect = 0.16 Identities = 19/71 (26%), Positives = 38/71 (53%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL++ + ELF+ + ++ + ++ + + G+ FV + S+ +AE A+ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 277 FNGKELMGRSI 245 NG L R I Sbjct: 101 INGTRLDDRII 111
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 35.0 bits (79), Expect = 0.16 Identities = 19/71 (26%), Positives = 38/71 (53%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL++ + ELF+ + ++ + ++ + + G+ FV + S+ +AE A+ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 277 FNGKELMGRSI 245 NG L R I Sbjct: 101 INGTRLDDRII 111
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 35.0 bits (79), Expect = 0.16 Identities = 19/71 (26%), Positives = 38/71 (53%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 ++VGNL++ + ELF+ + ++ + ++ + + G+ FV + S+ +AE A+ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 277 FNGKELMGRSI 245 NG L R I Sbjct: 101 INGTRLDDRII 111
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 35.0 bits (79), Expect = 0.16 Identities = 28/106 (26%), Positives = 45/106 (42%) Frame = -2 Query: 520 DFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRR 341 D P KQ P+ VFVG T + LRE F+ V V + P+ Sbjct: 174 DCKLPNSKQSQ--DEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI------PKP 225 Query: 340 SAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNKS 203 + FV+F+ + A++ G++L+ + I+V PK N + Sbjct: 226 FRAFAFVTFADDQIAQSLC----GEDLIIKGISVHISNAEPKHNSN 267
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 35.0 bits (79), Expect = 0.16 Identities = 26/108 (24%), Positives = 49/108 (45%) Frame = -2 Query: 529 IKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTT 350 I+ D P K+ A P PV++ + V N + L ++F + V ++ Sbjct: 371 IQTDVVLPSCKKKAPPETPVKERLFVVFN-PHPLPLDVLEDIFCRFGNLIEVYLV----- 424 Query: 349 PRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKKNK 206 G+V ++ ++ A AI+T +GK L G + VM + +++K Sbjct: 425 --SGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSPREESK 470
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = -2 Query: 430 VRSRHLRELFASTPGVQSVEVIFHTTTP------RRSAGYGFVSFSSKEEAEAAISTFNG 269 V+ ++R L ST + +E F+ P ++ Y FV FS++E+A A+ NG Sbjct: 230 VKILYVRNLMLST-SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNG 288 Query: 268 KELMGRSINVMFKEDTPK 215 K L G I V + K Sbjct: 289 KVLDGSPIEVTLAKPVDK 306
>YQ12_CAEEL (Q09449) Hypothetical ATP-dependent helicase C05C10.2 in chromosome| II (EC 3.6.1.-) Length = 1551 Score = 34.7 bits (78), Expect = 0.21 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +1 Query: 163 MILPLPTSLPLNQKICSFWECPL*TSR*WIVPSIPCH 273 M+LPLPTS+PL+ +IC+F+ + +I+ I CH Sbjct: 563 MVLPLPTSMPLDSEICAFYRVLVENKSKYIL--IACH 597
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/69 (30%), Positives = 36/69 (52%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 PK+ + PV+K +FVG L+ +RE F V+S+E+ T +R G+ Sbjct: 159 PKRAKAMKTKEPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR-RGF 215 Query: 328 GFVSFSSKE 302 F++F+ +E Sbjct: 216 CFITFNQEE 224
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/75 (28%), Positives = 38/75 (50%) Frame = -2 Query: 463 NVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAI 284 N +FVG ++ L +F++ V+S ++I S GYGFV+F +++EA+ Sbjct: 33 NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGV--SKGYGFVTFETEQEAQRLQ 90 Query: 283 STFNGKELMGRSINV 239 + L R +N+ Sbjct: 91 ADGECVVLRDRKLNI 105
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPR--RSAGYGFVSFSSKE 302 +FVG L+W + LR+ F ++S+ V T P+ RS G+ F+ F++ E Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINV---KTDPQTGRSRGFAFIVFTNTE 108
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VF+G L R + + F ++ +++ G+GFV F +A+ A+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL---------KRGFGFVEFEDPRDADDAVYE 56 Query: 277 FNGKELMGRSINV 239 +GKEL + + Sbjct: 57 LDGKELCSERVTI 69
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 +FVG L + LR+ F ++ VI T + S GYGFV+ + + AE A Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK-SRGYGFVTMADRAAAERACKD 71 Query: 277 FNGKELMGRSINV 239 N + GR NV Sbjct: 72 PN-PIIDGRKANV 83
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 34.7 bits (78), Expect = 0.21 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Frame = -2 Query: 469 EKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEA 290 ++ ++VGNL R + LR+LF G ++ ++ + + F+ F + Sbjct: 33 DRRTLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKK 92 Query: 289 AISTFNGKELMGRSI---NVMFKED 224 NGK M I N++ KE+ Sbjct: 93 VKEKMNGKIFMNEKIVIENILTKEE 117
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VF+G L R + + F ++ +++ G+GFV F +A+ A+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL---------KRGFGFVEFEDPRDADDAVYE 56 Query: 277 FNGKELMGRSINV 239 +GKEL + + Sbjct: 57 LDGKELCSERVTI 69
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 34.7 bits (78), Expect = 0.21 Identities = 23/89 (25%), Positives = 40/89 (44%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 S +E N +FV NL L ELF+ ++ V ++ ++ G +V F Sbjct: 718 SPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLN--KQFKGIAYVEFEKPG 775 Query: 301 EAEAAISTFNGKELMGRSINVMFKEDTPK 215 EA+ A++ +G G +I+V P+ Sbjct: 776 EAQRAVAGRDGCLFKGMNISVAISNPPPR 804
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/73 (23%), Positives = 32/73 (43%) Frame = -2 Query: 457 VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIST 278 VF+G L R + + F ++ +++ G+GFV F +A+ A+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL---------KRGFGFVEFEDPRDADDAVYE 56 Query: 277 FNGKELMGRSINV 239 +GKEL + + Sbjct: 57 LDGKELCSERVTI 69
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 34.3 bits (77), Expect = 0.27 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 PK+ + PV+K +FVG L+ +RE F V+S+E+ T +R G+ Sbjct: 167 PKRAKAMKTKEPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR-RGF 223 Query: 328 GFVSFSSKE 302 F++F +E Sbjct: 224 CFITFKEEE 232 Score = 34.3 bits (77), Expect = 0.27 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 +A E+ +F+G L+W + L++ F+ V + T RS G+GFV F E Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPIT-GRSRGFGFVLFKESE 147 Query: 301 EAEAAIS----TFNGKELMGRSINVMFKEDTPKK 212 + + NGK + + M ++ KK Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 181
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 34.3 bits (77), Expect = 0.27 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 PK+ + PV+K +FVG L+ +RE F V+S+E+ T +R G+ Sbjct: 169 PKRAKAMKTKEPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR-RGF 225 Query: 328 GFVSFSSKE 302 F++F +E Sbjct: 226 CFITFKEEE 234 Score = 33.9 bits (76), Expect = 0.35 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Frame = -2 Query: 481 SAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKE 302 +A E+ +F+G L+W + L++ F+ V + T RS G+GFV F E Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT-GRSRGFGFVLFKESE 149 Query: 301 EAEAAIS----TFNGKELMGRSINVMFKEDTPKK 212 + + NGK + + M ++ KK Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 183
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 34.3 bits (77), Expect = 0.27 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 PK+ + PV+K +FVG L+ +RE F V+S+E+ T +R G+ Sbjct: 169 PKRAKAMKTKEPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR-RGF 225 Query: 328 GFVSFSSKE 302 F++F +E Sbjct: 226 CFITFKEEE 234 Score = 34.3 bits (77), Expect = 0.27 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Frame = -2 Query: 514 AKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA 335 + P+ + A +A E+ +F+G L+W + L++ F+ V + T RS Sbjct: 82 SSPRHSEAA--TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT-GRSR 138 Query: 334 GYGFVSFSSKEEAEAAIS----TFNGKELMGRSINVMFKEDTPKK 212 G+GFV F E + + NGK + + M ++ KK Sbjct: 139 GFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 183
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 34.3 bits (77), Expect = 0.27 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = -2 Query: 508 PKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGY 329 PK+ + PV+K +FVG L+ +RE F V+S+E+ T +R G+ Sbjct: 21 PKRAKAMKTKEPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR-RGF 77 Query: 328 GFVSFSSKE 302 F++F +E Sbjct: 78 CFITFKEEE 86
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 34.3 bits (77), Expect = 0.27 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -2 Query: 457 VFVGNL-TWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAIS 281 VF+GNL T V+ + +F+ V V GY FV ++++ A AA+ Sbjct: 23 VFIGNLNTAVVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYANERHARAAVL 73 Query: 280 TFNGKELMGRSINVMFKEDTPKKNK 206 NG+ L G+++++ + PK N+ Sbjct: 74 GENGRVLAGQTLDINMAGE-PKPNR 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,188,451 Number of Sequences: 219361 Number of extensions: 1497901 Number of successful extensions: 4863 Number of sequences better than 10.0: 326 Number of HSP's better than 10.0 without gapping: 4214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4727 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
