ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483013.1| Oryza sativa (japonica cultivar-group), mRNA 291 1e-75
2dbj|AK072137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
3dbj|AK068161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 212 1e-51
5dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic D... 212 1e-51
6dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 212 1e-51
7ref|NM_111577.1| Arabidopsis thaliana RNA binding / nucleic acid... 48 0.032
8gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC... 48 0.032
9gb|DQ446643.1| Arabidopsis thaliana clone pENTR221-At3g06970 RNA... 48 0.032
10gb|AC114993.18| Mus musculus chromosome 5, clone RP23-42D10, com... 44 0.51
11gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, comp... 44 0.51
12gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome... 42 2.0
13gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 42 2.0
14ref|NM_019763.1| Mus musculus SPEN homolog, transcriptional regu... 42 2.0
15gb|AF156529.1|AF156529 Mus musculus Msx2 interacting nuclear tar... 42 2.0
16ref|XM_216586.3| PREDICTED: Rattus norvegicus similar to Msx-2 i... 42 2.0
17emb|BX957317.12| Zebrafish DNA sequence from clone DKEY-150K17 i... 42 2.0
18emb|AL603630.11| Mouse DNA sequence from clone RP23-350M23 on ch... 42 2.0
19gb|AF064966.1|CBNMPI1 Coxiella burnetii amplicon 15 partial sequ... 42 2.0
20gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, com... 42 2.0
21dbj|AB055980.1| Mus musculus MINT mRNA for Msx-2 interacting nuc... 42 2.0
22gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 40 7.9
23gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, com... 40 7.9
24gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 7.9
25gb|AY814465.1| Schistosoma japonicum SJCHGC03315 protein mRNA, c... 40 7.9
26gb|DQ173923.1| Homarus americanus heat shock protein 70 mRNA, co... 40 7.9
27gb|AC174291.12| Medicago truncatula clone mth2-58k14, complete s... 40 7.9
28gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, comple... 40 7.9
29gb|AC119413.16| Medicago truncatula clone mth2-19p2, complete se... 40 7.9
30emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on ch... 40 7.9
31emb|AL132967.1|ATT2J13 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.9
32gb|AC113280.12| Mus musculus chromosome 1, clone RP23-391E12, co... 40 7.9
33gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence 40 7.9
34gb|AC095035.2| Homo sapiens chromosome 1 clone RP11-159J16, comp... 40 7.9
35gb|AC104343.3| Homo sapiens chromosome 8, clone RP11-822K17, com... 40 7.9
36gb|AC153932.10| Mus musculus 10 BAC RP24-266J23 (Roswell Park Ca... 40 7.9
37gb|AC069442.33|AC069442 Homo sapiens 12 BAC RP11-152M7 (Roswell ... 40 7.9
38gb|AC159333.7| Mus musculus 10 BAC RP23-409C14 (Roswell Park Can... 40 7.9
39gb|AC119043.4| Homo sapiens 3 BAC RP11-582I9 (Roswell Park Cance... 40 7.9
40gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, comple... 40 7.9
41gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, c... 40 7.9
42gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromoso... 40 7.9
43gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromos... 40 7.9
44emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in li... 40 7.9
45gb|AY495828.1| Oryctolagus cuniculus clone 196O2 kappa 1 light c... 40 7.9
46gb|M23537.1|MZEZEIN10K Zea mays 10-kDa zein gene, complete cds 40 7.9 
>ref|XM_483013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1374

 Score =  291 bits (147), Expect = 1e-75
 Identities = 321/379 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 agatttgttctttttgggagtgtcctctttgaacatcacgttaatggatcgtcccatcaa 262
           |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 794 agatttattctttttggcattgtcatctttgaacatcacgttaatggatcttcccatcaa 735

                                                                       
Query: 263 ttccttgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaac 322
           || | |||||||||||||||| || |||||||||||  ||||||||||||||||||||||
Sbjct: 734 tttcgtgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaac 675

                                                                       
Query: 323 aaatccataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattg 382
           |||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||
Sbjct: 674 aaatccataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattg 615

                                                                       
Query: 383 gacacctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaa 442
            |||||||||||||| |||||||| || |||||||| || |||||||||||||| || | 
Sbjct: 614 aacacctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcag 555

                                                                       
Query: 443 attccccacaaacacaacatttttctccacaggagctgatggcacagcaggttgcttctt 502
           ||| |||||||| ||    |  |||  ||  ||||||||||||||| ||   ||||||||
Sbjct: 554 attacccacaaaaacgctgtgcttcggcatgggagctgatggcacaacatactgcttctt 495

                                                                       
Query: 503 tttaggttttgcaaagtccaccttaatcgttctatcgttcaaagtagacaaattgagatt 562
           | | | | | | |||||| |||||||| |||||||| || | ||||| | |||| |||| 
Sbjct: 494 tctcgatctagtaaagtctaccttaattgttctatcatttagagtagtcgaatttagatg 435

                              
Query: 563 cttgagtgctgaaagagcc 581
            ||||||||||||||||||
Sbjct: 434 gttgagtgctgaaagagcc 416
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>dbj|AK072137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128O11, full
           insert sequence
          Length = 3167

 Score =  291 bits (147), Expect = 1e-75
 Identities = 321/379 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 agatttgttctttttgggagtgtcctctttgaacatcacgttaatggatcgtcccatcaa 262
           |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 801 agatttattctttttggcattgtcatctttgaacatcacgttaatggatcttcccatcaa 742

                                                                       
Query: 263 ttccttgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaac 322
           || | |||||||||||||||| || |||||||||||  ||||||||||||||||||||||
Sbjct: 741 tttcgtgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaac 682

                                                                       
Query: 323 aaatccataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattg 382
           |||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||
Sbjct: 681 aaatccataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattg 622

                                                                       
Query: 383 gacacctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaa 442
            |||||||||||||| |||||||| || |||||||| || |||||||||||||| || | 
Sbjct: 621 aacacctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcag 562

                                                                       
Query: 443 attccccacaaacacaacatttttctccacaggagctgatggcacagcaggttgcttctt 502
           ||| |||||||| ||    |  |||  ||  ||||||||||||||| ||   ||||||||
Sbjct: 561 attacccacaaaaacgctgtgcttcggcatgggagctgatggcacaacatactgcttctt 502

                                                                       
Query: 503 tttaggttttgcaaagtccaccttaatcgttctatcgttcaaagtagacaaattgagatt 562
           | | | | | | |||||| |||||||| |||||||| || | ||||| | |||| |||| 
Sbjct: 501 tctcgatctagtaaagtctaccttaattgttctatcatttagagtagtcgaatttagatg 442

                              
Query: 563 cttgagtgctgaaagagcc 581
            ||||||||||||||||||
Sbjct: 441 gttgagtgctgaaagagcc 423
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>dbj|AK068161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134M04, full
           insert sequence
          Length = 1374

 Score =  291 bits (147), Expect = 1e-75
 Identities = 321/379 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 agatttgttctttttgggagtgtcctctttgaacatcacgttaatggatcgtcccatcaa 262
           |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 794 agatttattctttttggcattgtcatctttgaacatcacgttaatggatcttcccatcaa 735

                                                                       
Query: 263 ttccttgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaac 322
           || | |||||||||||||||| || |||||||||||  ||||||||||||||||||||||
Sbjct: 734 tttcgtgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaac 675

                                                                       
Query: 323 aaatccataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattg 382
           |||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||
Sbjct: 674 aaatccataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattg 615

                                                                       
Query: 383 gacacctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaa 442
            |||||||||||||| |||||||| || |||||||| || |||||||||||||| || | 
Sbjct: 614 aacacctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcag 555

                                                                       
Query: 443 attccccacaaacacaacatttttctccacaggagctgatggcacagcaggttgcttctt 502
           ||| |||||||| ||    |  |||  ||  ||||||||||||||| ||   ||||||||
Sbjct: 554 attacccacaaaaacgctgtgcttcggcatgggagctgatggcacaacatactgcttctt 495

                                                                       
Query: 503 tttaggttttgcaaagtccaccttaatcgttctatcgttcaaagtagacaaattgagatt 562
           | | | | | | |||||| |||||||| |||||||| || | ||||| | |||| |||| 
Sbjct: 494 tctcgatctagtaaagtctaccttaattgttctatcatttagagtagtcgaatttagatg 435

                              
Query: 563 cttgagtgctgaaagagcc 581
            ||||||||||||||||||
Sbjct: 434 gttgagtgctgaaagagcc 416
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  212 bits (107), Expect = 1e-51
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                            
Query: 268      tgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaacaaatc 327
                |||||||||||||||| || |||||||||||  |||||||||||||||||||||||||||
Sbjct: 23866987 tgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaacaaatc 23867046

                                                                            
Query: 328      cataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattggacac 387
                ||||||||||||||||||| ||  | |||||||| |||| ||||||||||||||| ||||
Sbjct: 23867047 cataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattgaacac 23867106

                                                                            
Query: 388      ctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaaattcc 447
                |||||||||| |||||||| || |||||||| || |||||||||||||| || | ||| |
Sbjct: 23867107 ctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcagattac 23867166

                       
Query: 448      ccacaaa 454
                |||||||
Sbjct: 23867167 ccacaaa 23867173



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                            
Query: 203      agatttgttctttttgggagtgtcctctttgaacatcacgttaatggatcgtcccatcaa 262
                |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 23866800 agatttattctttttggcattgtcatctttgaacatcacgttaatggatcttcccatcaa 23866859

                  
Query: 263      tt 264
                ||
Sbjct: 23866860 tt 23866861
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>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_H02
          Length = 108603

 Score =  212 bits (107), Expect = 1e-51
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                         
Query: 268   tgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaacaaatc 327
             |||||||||||||||| || |||||||||||  |||||||||||||||||||||||||||
Sbjct: 58691 tgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaacaaatc 58750

                                                                         
Query: 328   cataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattggacac 387
             ||||||||||||||||||| ||  | |||||||| |||| ||||||||||||||| ||||
Sbjct: 58751 cataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattgaacac 58810

                                                                         
Query: 388   ctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaaattcc 447
             |||||||||| |||||||| || |||||||| || |||||||||||||| || | ||| |
Sbjct: 58811 ctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcagattac 58870

                    
Query: 448   ccacaaa 454
             |||||||
Sbjct: 58871 ccacaaa 58877



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                         
Query: 203   agatttgttctttttgggagtgtcctctttgaacatcacgttaatggatcgtcccatcaa 262
             |||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 58504 agatttattctttttggcattgtcatctttgaacatcacgttaatggatcttcccatcaa 58563

               
Query: 263   tt 264
             ||
Sbjct: 58564 tt 58565
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           PAC clone:P0419H09
          Length = 143533

 Score =  212 bits (107), Expect = 1e-51
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 268 tgccattgaaggtagaaatagcagcctctgcctcctcttttgaggaaaaggaaacaaatc 327
           |||||||||||||||| || |||||||||||  |||||||||||||||||||||||||||
Sbjct: 138 tgccattgaaggtagatatggcagcctctgctgcctcttttgaggaaaaggaaacaaatc 197

                                                                       
Query: 328 cataaccagcagatcgccttggtgtggtggtatgaaagataacttcaactgattggacac 387
           ||||||||||||||||||| ||  | |||||||| |||| ||||||||||||||| ||||
Sbjct: 198 cataaccagcagatcgcctcggacttgtggtatggaagacaacttcaactgattgaacac 257

                                                                       
Query: 388 ctggggttgaggcaaataactcccgaagatgacgggatctcactctccatgttaaattcc 447
           |||||||||| |||||||| || |||||||| || |||||||||||||| || | ||| |
Sbjct: 258 ctggggttgatgcaaataattcacgaagatggcgagatctcactctccacgtcagattac 317

                  
Query: 448 ccacaaa 454
           |||||||
Sbjct: 318 ccacaaa 324
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>ref|NM_111577.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G06970
           mRNA, complete cds
          Length = 819

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 431 tctccatgttaaattccccacaaa 454
           ||||||||||||||||||||||||
Sbjct: 66  tctccatgttaaattccccacaaa 43
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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 431   tctccatgttaaattccccacaaa 454
             ||||||||||||||||||||||||
Sbjct: 40178 tctccatgttaaattccccacaaa 40201
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>gb|DQ446643.1| Arabidopsis thaliana clone pENTR221-At3g06970 RNA recognition
           motif-containing protein (At3g06970) mRNA, complete cds
          Length = 954

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 431 tctccatgttaaattccccacaaa 454
           ||||||||||||||||||||||||
Sbjct: 66  tctccatgttaaattccccacaaa 43
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>gb|AC114993.18| Mus musculus chromosome 5, clone RP23-42D10, complete sequence
          Length = 208968

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 166    attctgcctcttccaacttccc 187
              ||||||||||||||||||||||
Sbjct: 167439 attctgcctcttccaacttccc 167418
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>gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, complete sequence
          Length = 204540

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 540    ttcaaagtagacaaattgagat 561
              ||||||||||||||||||||||
Sbjct: 104462 ttcaaagtagacaaattgagat 104483
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>gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome 9, complete sequence
          Length = 208028

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    cctctgcctcctcttttgagg 312
              |||||||||||||||||||||
Sbjct: 120094 cctctgcctcctcttttgagg 120074
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 277     aggtagaaatagcagcctctg 297
               |||||||||||||||||||||
Sbjct: 1512522 aggtagaaatagcagcctctg 1512542
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>ref|NM_019763.1| Mus musculus SPEN homolog, transcriptional regulator (Drosophila)
            (Spen), mRNA
          Length = 10839

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  tttgcaaagtccaccttaatc 530
            |||||||||||||||||||||
Sbjct: 1622 tttgcaaagtccaccttaatc 1602
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>gb|AF156529.1|AF156529 Mus musculus Msx2 interacting nuclear target protein mRNA, complete
            cds
          Length = 10839

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  tttgcaaagtccaccttaatc 530
            |||||||||||||||||||||
Sbjct: 1622 tttgcaaagtccaccttaatc 1602
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>ref|XM_216586.3| PREDICTED: Rattus norvegicus similar to Msx-2 interacting nuclear
            target protein (LOC298604), mRNA
          Length = 10773

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  tttgcaaagtccaccttaatc 530
            |||||||||||||||||||||
Sbjct: 1913 tttgcaaagtccaccttaatc 1893
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>emb|BX957317.12| Zebrafish DNA sequence from clone DKEY-150K17 in linkage group 19,
              complete sequence
          Length = 222684

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ttgccattgaaggtagaaata 287
              |||||||||||||||||||||
Sbjct: 198544 ttgccattgaaggtagaaata 198524
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>emb|AL603630.11| Mouse DNA sequence from clone RP23-350M23 on chromosome 9, complete
             sequence
          Length = 202081

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 292   cctctgcctcctcttttgagg 312
             |||||||||||||||||||||
Sbjct: 52603 cctctgcctcctcttttgagg 52583
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>gb|AF064966.1|CBNMPI1 Coxiella burnetii amplicon 15 partial sequence
          Length = 252

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 aggtagaaatagcagcctctg 297
           |||||||||||||||||||||
Sbjct: 68  aggtagaaatagcagcctctg 48
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>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence
          Length = 206926

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   agcctctgcctcctcttttga 310
             |||||||||||||||||||||
Sbjct: 70102 agcctctgcctcctcttttga 70122
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>dbj|AB055980.1| Mus musculus MINT mRNA for Msx-2 interacting nuclear target protein,
            complete cds
          Length = 10718

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  tttgcaaagtccaccttaatc 530
            |||||||||||||||||||||
Sbjct: 1562 tttgcaaagtccaccttaatc 1542
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    cccacaaacacaacattttt 466
              ||||||||||||||||||||
Sbjct: 171874 cccacaaacacaacattttt 171855
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>gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, complete sequence
          Length = 174626

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tctttctgtggttctcacaa 132
              ||||||||||||||||||||
Sbjct: 142508 tctttctgtggttctcacaa 142527
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 470     cacaggagctgatggcacag 489
               ||||||||||||||||||||
Sbjct: 1280739 cacaggagctgatggcacag 1280758
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>gb|AY814465.1| Schistosoma japonicum SJCHGC03315 protein mRNA, complete cds
          Length = 934

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 494 ttgcttctttttaggttttg 513
           ||||||||||||||||||||
Sbjct: 161 ttgcttctttttaggttttg 180
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>gb|DQ173923.1| Homarus americanus heat shock protein 70 mRNA, complete cds
          Length = 2297

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tcaattccttgccattgaag 278
            ||||||||||||||||||||
Sbjct: 1163 tcaattccttgccattgaag 1144
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>gb|AC174291.12| Medicago truncatula clone mth2-58k14, complete sequence
          Length = 117627

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   tctgaatcagaagatttgtt 211
             ||||||||||||||||||||
Sbjct: 94457 tctgaatcagaagatttgtt 94476
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>gb|AC122856.3| Mus musculus BAC clone RP23-121N19 from 3, complete sequence
          Length = 187311

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    cccacaaacacaacattttt 466
              ||||||||||||||||||||
Sbjct: 144707 cccacaaacacaacattttt 144726
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>gb|AC119413.16| Medicago truncatula clone mth2-19p2, complete sequence
          Length = 113431

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 318   gaaacaaatccataaccagcagat 341
             |||||||||||||| |||||||||
Sbjct: 96233 gaaacaaatccatacccagcagat 96256
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>emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on chromosome 10 Contains the
             3' end of gene LOC170394, four novel genes, gene
             LOC170393, the 5' end of the INPP5A gene for inositol
             polyphosphate-5-phosphatase 40kDa and five CpG islands,
             complete sequence
          Length = 149579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   ctccacaggagctgatggca 486
             ||||||||||||||||||||
Sbjct: 14197 ctccacaggagctgatggca 14178
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>emb|AL132967.1|ATT2J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T2J13
          Length = 85109

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   tctttttgggagtgtcctctttga 234
             ||||||| ||||||||||||||||
Sbjct: 65142 tctttttaggagtgtcctctttga 65165
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>gb|AC113280.12| Mus musculus chromosome 1, clone RP23-391E12, complete sequence
          Length = 217982

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   aaaaggaaacaaatccataa 332
             ||||||||||||||||||||
Sbjct: 96823 aaaaggaaacaaatccataa 96804
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>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ataactgaatgagtgcaaag 35
             ||||||||||||||||||||
Sbjct: 31399 ataactgaatgagtgcaaag 31380
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>gb|AC095035.2| Homo sapiens chromosome 1 clone RP11-159J16, complete sequence
          Length = 173084

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    agaggtattactggaagaga 79
             ||||||||||||||||||||
Sbjct: 62191 agaggtattactggaagaga 62172
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>gb|AC104343.3| Homo sapiens chromosome 8, clone RP11-822K17, complete sequence
          Length = 203753

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 292   cctctgcctcctcttttgaggaaa 315
             ||||||||||||||||| ||||||
Sbjct: 94993 cctctgcctcctcttttaaggaaa 94970
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>gb|AC153932.10| Mus musculus 10 BAC RP24-266J23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162628

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ttccaacttcccttcctctg 195
              ||||||||||||||||||||
Sbjct: 149794 ttccaacttcccttcctctg 149813
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>gb|AC069442.33|AC069442 Homo sapiens 12 BAC RP11-152M7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 67140

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   atttgttctttttgggagtg 224
             ||||||||||||||||||||
Sbjct: 26274 atttgttctttttgggagtg 26293
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>gb|AC159333.7| Mus musculus 10 BAC RP23-409C14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201801

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ttccaacttcccttcctctg 195
              ||||||||||||||||||||
Sbjct: 176244 ttccaacttcccttcctctg 176225
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>gb|AC119043.4| Homo sapiens 3 BAC RP11-582I9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164027

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   aagagagcattatagtcctgcaga 97
            ||||||||| ||||||||||||||
Sbjct: 7653 aagagagcaatatagtcctgcaga 7676
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>gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, complete sequence
          Length = 153304

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   ttctttctgtggttctcacaacaa 135
             |||||||||| |||||||||||||
Sbjct: 33049 ttctttctgtagttctcacaacaa 33026
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>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    cccacaaacacaacattttt 466
              ||||||||||||||||||||
Sbjct: 182034 cccacaaacacaacattttt 182015
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>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete
              sequence
          Length = 207137

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    acaaacacaacatttttctc 469
              ||||||||||||||||||||
Sbjct: 124545 acaaacacaacatttttctc 124526
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>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown,
            complete sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  acaaacacaacatttttctc 469
            ||||||||||||||||||||
Sbjct: 1308 acaaacacaacatttttctc 1289
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>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15,
             complete sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ataactgaatgagtgcaaag 35
             ||||||||||||||||||||
Sbjct: 64051 ataactgaatgagtgcaaag 64070
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>gb|AY495828.1| Oryctolagus cuniculus clone 196O2 kappa 1 light chain immunglobulin gene
              region
          Length = 178084

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    ggagtgtcctctttgaacat 238
              ||||||||||||||||||||
Sbjct: 155341 ggagtgtcctctttgaacat 155360
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>gb|M23537.1|MZEZEIN10K Zea mays 10-kDa zein gene, complete cds
          Length = 2562

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 ttgaggaaaaggaaacaaat 326
           ||||||||||||||||||||
Sbjct: 127 ttgaggaaaaggaaacaaat 146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,466,433
Number of Sequences: 3902068
Number of extensions: 7466433
Number of successful extensions: 169965
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169792
Number of HSP's gapped (non-prelim): 170
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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