ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1693_SYNPX (Q7U5L0) UPF0161 protein SYNW1693 28 7.7

>Y1693_SYNPX (Q7U5L0) UPF0161 protein SYNW1693|
          Length = 66

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 209 VDRHAVXXXAGLRXSRLLTCSPGRNCRCDP 298
           + RH       L   RLL C P   C CDP
Sbjct: 34  IQRHGPWKGGWLTVKRLLRCHPFTPCGCDP 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,692,193
Number of Sequences: 219361
Number of extensions: 483472
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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