ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK063852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D01, full insert sequence Length = 1282 Score = 186 bits (94), Expect = 3e-44 Identities = 245/296 (82%), Gaps = 4/296 (1%) Strand = Plus / Minus Query: 1 ctgtaaacaacaaacaaancctactaaacggcaccgagtacgggtgccgttcatgcccta 60 |||||||||||||||||| |||||| ||||||||| || ||| ||| |||||||| Sbjct: 1178 ctgtaaacaacaaacaaatttgactaaataacaccgagtatgg-tgcagtttatgcccta 1120 Query: 61 atcacaagctcatatacattgctattgttctctctgctaaggcgctttagtgcctcgaag 120 |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| || Sbjct: 1119 atcacaagctcatatacattgctattgttctctctgctgaggcgttttagcccctcaaaa 1060 Query: 121 cttctccggcttcccaaaaaatctactcttttgaatgctattacaaagcctgatcctgcg 180 ||||| ||||||||||||||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 1059 cttcttcggcttcccaaaaaatcaattcttttgaatg---ttacaaaacctctttctgct 1003 Query: 181 cattcagcacttncgtacagggaacgaagtcgatcggcatgccgtgaannngngtgcagg 240 |||||| |||| ||||||| || ||||||||||| ||||| |||||| | |||||| Sbjct: 1002 gattcagtacttgcgtacagcgagcgaagtcgatcagcatgtcgtgaatccgtttgcagg 943 Query: 241 gctacgnncatctcgtctgttgacatgttctcctggtagaaattgtagatgtgatc 296 ||||| ||||| || | ||||| || ||||||||||| |||||||||||||| Sbjct: 942 gctacatttatctcatcggaagacatattttcctggtagaagttgtagatgtgatc 887
>gb|AY224539.1| Oryza sativa (japonica cultivar-group) isolate 23388 unknown mRNA Length = 1530 Score = 176 bits (89), Expect = 3e-41 Identities = 204/244 (83%), Gaps = 3/244 (1%) Strand = Plus / Minus Query: 53 atgccctaatcacaagctcatatacattgctattgttctctctgctaaggcgctttagtg 112 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1528 atgccctaatcacaagctcatatacattgctattgttctctctgctgaggcgttttagcc 1469 Query: 113 cctcgaagcttctccggcttcccaaaaaatctactcttttgaatgctattacaaagcctg 172 |||| || ||||| ||||||||||||||||| | ||||||||||| ||||||| ||| Sbjct: 1468 cctcaaaacttcttcggcttcccaaaaaatcaattcttttgaatg---ttacaaaacctc 1412 Query: 173 atcctgcgcattcagcacttncgtacagggaacgaagtcgatcggcatgccgtgaannng 232 | |||| |||||| |||| ||||||| || ||||||||||| ||||| |||||| | Sbjct: 1411 tttctgctgattcagtacttgcgtacagcgagcgaagtcgatcagcatgtcgtgaatccg 1352 Query: 233 ngtgcagggctacgnncatctcgtctgttgacatgttctcctggtagaaattgtagatgt 292 ||||||||||| ||||| || | ||||| || ||||||||||| |||||||||| Sbjct: 1351 tttgcagggctacatttatctcatcggaagacatattttcctggtagaagttgtagatgt 1292 Query: 293 gatc 296 |||| Sbjct: 1291 gatc 1288
>dbj|AK073097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005K23, full insert sequence Length = 2065 Score = 172 bits (87), Expect = 4e-40 Identities = 245/297 (82%), Gaps = 5/297 (1%) Strand = Plus / Minus Query: 1 ctgtaaacaacaaacaaancctactaaacggcaccgagtacgggtgccgttcatgcccta 60 |||||||||||||||||| |||||| ||||||||| || ||| ||| |||||||| Sbjct: 1972 ctgtaaacaacaaacaaatttgactaaataacaccgagtatgg-tgcagtttatgcccta 1914 Query: 61 atcacaagctcatatacattgctattgttctctctgctaaggcg-ctttagtgcctcgaa 119 |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| || Sbjct: 1913 atcacaagctcatatacattgctattgttctctctgctgaggcgtttttagcccctcaaa 1854 Query: 120 gcttctccggcttcccaaaaaatctactcttttgaatgctattacaaagcctgatcctgc 179 ||||| ||||||||||||||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 1853 acttcttcggcttcccaaaaaatcaattcttttgaatg---ttacaaaacctctttctgc 1797 Query: 180 gcattcagcacttncgtacagggaacgaagtcgatcggcatgccgtgaannngngtgcag 239 |||||| |||| ||||||| || ||||||||||| ||||| |||||| | ||||| Sbjct: 1796 tgattcagtacttgcgtacagcgagcgaagtcgatcagcatgtcgtgaatccgtttgcag 1737 Query: 240 ggctacgnncatctcgtctgttgacatgttctcctggtagaaattgtagatgtgatc 296 |||||| ||||| || | ||||| || ||||||||||| |||||||||||||| Sbjct: 1736 ggctacatttatctcatcggaagacatattttcctggtagaagttgtagatgtgatc 1680
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 168 bits (85), Expect = 6e-39 Identities = 205/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Minus Query: 1 ctgtaaacaacaaacaaancctactaaacggcaccgagtacgggtgccgttcatgcccta 60 |||||||||||||||||| |||||| ||||||||| || ||| ||| |||||||| Sbjct: 16275167 ctgtaaacaacaaacaaatttgactaaataacaccgagtatgg-tgcagtttatgcccta 16275109 Query: 61 atcacaagctcatatacattgctattgttctctctgctaaggcgctttagtgcctcgaag 120 |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| || Sbjct: 16275108 atcacaagctcatatacattgctattgttctctctgctgaggcgttttagcccctcaaaa 16275049 Query: 121 cttctccggcttcccaaaaaatctactcttttgaatgctattacaaagcctgatcctgcg 180 ||||| ||||||||||||||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 16275048 cttcttcggcttcccaaaaaatcaattcttttgaatg---ttacaaaacctctttctgct 16274992 Query: 181 cattcagcacttncgtacagggaacgaagtcgatcggcatgccgtgaannngngtgcagg 240 |||||| |||| ||||||| || ||||||||||| ||||| |||||| | |||||| Sbjct: 16274991 gattcagtacttgcgtacagcgagcgaagtcgatcagcatgtcgtgaatccgtttgcagg 16274932 Query: 241 gctac 245 ||||| Sbjct: 16274931 gctac 16274927 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 cctggtagaaattgtagatgtgatc 296 |||||||||| |||||||||||||| Sbjct: 16274754 cctggtagaagttgtagatgtgatc 16274730
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 168 bits (85), Expect = 6e-39 Identities = 205/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Minus Query: 1 ctgtaaacaacaaacaaancctactaaacggcaccgagtacgggtgccgttcatgcccta 60 |||||||||||||||||| |||||| ||||||||| || ||| ||| |||||||| Sbjct: 91683 ctgtaaacaacaaacaaatttgactaaataacaccgagtatgg-tgcagtttatgcccta 91625 Query: 61 atcacaagctcatatacattgctattgttctctctgctaaggcgctttagtgcctcgaag 120 |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| || Sbjct: 91624 atcacaagctcatatacattgctattgttctctctgctgaggcgttttagcccctcaaaa 91565 Query: 121 cttctccggcttcccaaaaaatctactcttttgaatgctattacaaagcctgatcctgcg 180 ||||| ||||||||||||||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 91564 cttcttcggcttcccaaaaaatcaattcttttgaatg---ttacaaaacctctttctgct 91508 Query: 181 cattcagcacttncgtacagggaacgaagtcgatcggcatgccgtgaannngngtgcagg 240 |||||| |||| ||||||| || ||||||||||| ||||| |||||| | |||||| Sbjct: 91507 gattcagtacttgcgtacagcgagcgaagtcgatcagcatgtcgtgaatccgtttgcagg 91448 Query: 241 gctac 245 ||||| Sbjct: 91447 gctac 91443 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 cctggtagaaattgtagatgtgatc 296 |||||||||| |||||||||||||| Sbjct: 91270 cctggtagaagttgtagatgtgatc 91246
>emb|AL844167.7| Mouse DNA sequence from clone RP23-66F6 on chromosome 2, complete sequence Length = 232834 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aaaaaatctactcttttgaat 156 ||||||||||||||||||||| Sbjct: 17323 aaaaaatctactcttttgaat 17303
>emb|BX323024.11| Zebrafish DNA sequence from clone DKEYP-2B10 in linkage group 7, complete sequence Length = 178824 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aaaaatctactcttttgaat 156 |||||||||||||||||||| Sbjct: 101147 aaaaatctactcttttgaat 101166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,906,255 Number of Sequences: 3902068 Number of extensions: 1906255 Number of successful extensions: 43144 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43102 Number of HSP's gapped (non-prelim): 29 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
