ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23p06 |
|---|---|
| Clone Library Name | barley_pub |
>RS7_HORVU (Q949H0) 40S ribosomal protein S7| Length = 191 Score = 146 bits (368), Expect = 1e-35 Identities = 72/77 (93%), Positives = 72/77 (93%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 TRTL VH GIL DVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR Sbjct: 115 TRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 174 Query: 126 RLCGKDVVFEYPVAATA 76 RLCGKDVVFEYPVA TA Sbjct: 175 RLCGKDVVFEYPVAETA 191
>RS7_SECCE (Q9XET4) 40S ribosomal protein S7| Length = 192 Score = 136 bits (343), Expect = 1e-32 Identities = 64/77 (83%), Positives = 71/77 (92%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 TRTL VH G+L DVVYPAEIVGKRVRYRLDG+K+IKI+LDP ERNNTEYKL+TF+AVYR Sbjct: 116 TRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYR 175 Query: 126 RLCGKDVVFEYPVAATA 76 RLCGKDVV+EYPVA TA Sbjct: 176 RLCGKDVVYEYPVAETA 192
>RS7_ORYSA (Q8LJU5) 40S ribosomal protein S7| Length = 192 Score = 133 bits (334), Expect = 1e-31 Identities = 62/77 (80%), Positives = 69/77 (89%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 TRTL VH GIL DVVYPAEIVGKRVRY LDG K++KI+LDPKERNNTEYKL+TFS+VYR Sbjct: 116 TRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYR 175 Query: 126 RLCGKDVVFEYPVAATA 76 RLCGKDVVF+YP+ TA Sbjct: 176 RLCGKDVVFDYPMTETA 192
>RS7_BRAOL (Q9XH45) 40S ribosomal protein S7| Length = 191 Score = 117 bits (293), Expect = 7e-27 Identities = 54/73 (73%), Positives = 61/73 (83%) Frame = -1 Query: 303 RTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRR 124 RTL VH +L DV YPAEIVGKR RYR+DG K++K+YL+PKERNNTEYKLET VYR+ Sbjct: 117 RTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRK 176 Query: 123 LCGKDVVFEYPVA 85 L GKDVVFEYPVA Sbjct: 177 LTGKDVVFEYPVA 189
>RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7| Length = 190 Score = 112 bits (280), Expect = 2e-25 Identities = 50/73 (68%), Positives = 64/73 (87%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH +L D+VYPAEIVGKRVRYRLDG+K++K++LDPK +N+TE KLETF+ VYR Sbjct: 116 SRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYR 175 Query: 126 RLCGKDVVFEYPV 88 +L GKDVVFE+P+ Sbjct: 176 KLSGKDVVFEFPL 188
>RS7_XENLA (P02362) 40S ribosomal protein S7 (S8)| Length = 194 Score = 100 bits (248), Expect = 1e-21 Identities = 43/72 (59%), Positives = 61/72 (84%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+VYP+EIVG+R+R +LDG+++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDVVFE+P Sbjct: 179 KLTGKDVVFEFP 190
>RS7_ICTPU (Q90YR7) 40S ribosomal protein S7| Length = 194 Score = 97.8 bits (242), Expect = 6e-21 Identities = 42/72 (58%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+VYP+EIVGKR+R +LD +++IK++LD ++NN E+K+ETF+ VY+ Sbjct: 119 SRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDVVFE+P Sbjct: 179 KLTGKDVVFEFP 190
>RS7_NEUCR (O43105) 40S ribosomal protein S7| Length = 202 Score = 97.4 bits (241), Expect = 8e-21 Identities = 43/75 (57%), Positives = 60/75 (80%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+VYP EIVGKR+R + DG+K +K+ LD KER + +Y+L+T+SAVYR Sbjct: 125 SRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYR 184 Query: 126 RLCGKDVVFEYPVAA 82 RL GK+V+FE+P+ + Sbjct: 185 RLTGKNVLFEFPLVS 199
>RS7_RAT (P62083) 40S ribosomal protein S7 (S8)| Length = 194 Score = 97.1 bits (240), Expect = 1e-20 Identities = 42/72 (58%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV FE+P Sbjct: 179 KLTGKDVNFEFP 190
>RS7_MOUSE (P62082) 40S ribosomal protein S7| Length = 194 Score = 97.1 bits (240), Expect = 1e-20 Identities = 42/72 (58%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV FE+P Sbjct: 179 KLTGKDVNFEFP 190
>RS7_HUMAN (P62081) 40S ribosomal protein S7| Length = 194 Score = 97.1 bits (240), Expect = 1e-20 Identities = 42/72 (58%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV FE+P Sbjct: 179 KLTGKDVNFEFP 190
>RS7_FELCA (Q5RT64) 40S ribosomal protein S7| Length = 194 Score = 97.1 bits (240), Expect = 1e-20 Identities = 42/72 (58%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV FE+P Sbjct: 179 KLTGKDVNFEFP 190
>RS7_FUGRU (P50894) 40S ribosomal protein S7| Length = 194 Score = 96.7 bits (239), Expect = 1e-20 Identities = 41/72 (56%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R ++D +++IK++LD ++NN E+K+ETFS VY+ Sbjct: 119 SRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDVVFE+P Sbjct: 179 KLTGKDVVFEFP 190
>RS7_BRARE (P62084) 40S ribosomal protein S7| Length = 194 Score = 95.5 bits (236), Expect = 3e-20 Identities = 40/72 (55%), Positives = 60/72 (83%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P+EIVGKR+R +LD +++IK++LD ++NN E+K+ETF+ VY+ Sbjct: 119 SRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYK 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV+FE+P Sbjct: 179 KLTGKDVIFEFP 190
>RS7_SCHPO (Q10101) 40S ribosomal protein S7| Length = 195 Score = 90.5 bits (223), Expect = 1e-18 Identities = 40/74 (54%), Positives = 54/74 (72%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P EI+GKR R DG K IK++LD ++ N +YKL +FS+VY Sbjct: 117 SRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYH 176 Query: 126 RLCGKDVVFEYPVA 85 +L GK+V FE+PVA Sbjct: 177 KLTGKNVTFEFPVA 190
>RS7_DROYA (P62085) 40S ribosomal protein S7| Length = 194 Score = 88.6 bits (218), Expect = 4e-18 Identities = 36/72 (50%), Positives = 59/72 (81%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL V+ IL D+V+PAEIVGKR+R +LDG++++K++LD ++ E+K++TF++VY+ Sbjct: 117 SRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYK 176 Query: 126 RLCGKDVVFEYP 91 +L G+DV FE+P Sbjct: 177 KLTGRDVTFEFP 188
>RS7_DROME (Q9VA91) 40S ribosomal protein S7| Length = 194 Score = 88.6 bits (218), Expect = 4e-18 Identities = 36/72 (50%), Positives = 59/72 (81%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL V+ IL D+V+PAEIVGKR+R +LDG++++K++LD ++ E+K++TF++VY+ Sbjct: 117 SRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYK 176 Query: 126 RLCGKDVVFEYP 91 +L G+DV FE+P Sbjct: 177 KLTGRDVTFEFP 188
>RS7_CULQU (Q9NB21) 40S ribosomal protein S7| Length = 192 Score = 88.6 bits (218), Expect = 4e-18 Identities = 36/72 (50%), Positives = 59/72 (81%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL V+ IL D+V+PAE+VGKR+R +LDG+++IK++LD ++ E+K++TF++VY+ Sbjct: 117 SRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYK 176 Query: 126 RLCGKDVVFEYP 91 +L G+DV FE+P Sbjct: 177 KLTGRDVTFEFP 188
>RS7_SPOFR (Q962S0) 40S ribosomal protein S7| Length = 190 Score = 87.0 bits (214), Expect = 1e-17 Identities = 36/72 (50%), Positives = 58/72 (80%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL V+ IL D+V+PAEIVGKR+R +LDG+++IK++LD ++ E+K++TF +VY+ Sbjct: 115 SRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 174 Query: 126 RLCGKDVVFEYP 91 +L G++V FE+P Sbjct: 175 KLTGREVTFEFP 186
>RS7_MANSE (P48155) 40S ribosomal protein S7| Length = 190 Score = 87.0 bits (214), Expect = 1e-17 Identities = 36/72 (50%), Positives = 58/72 (80%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL V+ IL D+V+PAEIVGKR+R +LDG+++IK++LD ++ E+K++TF +VY+ Sbjct: 115 SRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 174 Query: 126 RLCGKDVVFEYP 91 +L G++V FE+P Sbjct: 175 KLTGREVTFEFP 186
>RS7_CAEEL (Q23312) 40S ribosomal protein S7| Length = 194 Score = 85.5 bits (210), Expect = 3e-17 Identities = 37/72 (51%), Positives = 53/72 (73%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH L ++VYPAE+VG+R+R +LDG KV K++LD + N +K+ F++VYR Sbjct: 119 SRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYR 178 Query: 126 RLCGKDVVFEYP 91 +L GKDV FE+P Sbjct: 179 KLTGKDVTFEFP 190
>RS7A_YEAST (P26786) 40S ribosomal protein S7-A (RP30)| Length = 189 Score = 84.7 bits (208), Expect = 5e-17 Identities = 40/72 (55%), Positives = 51/72 (70%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH IL D+V+P EIVGKRVRY + G K+ K+ LD K+ +YKLE+F AVY Sbjct: 114 SRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYN 173 Query: 126 RLCGKDVVFEYP 91 +L GK +VFE P Sbjct: 174 KLTGKQIVFEIP 185
>RS7B_YEAST (P48164) 40S ribosomal protein S7-B| Length = 190 Score = 84.3 bits (207), Expect = 7e-17 Identities = 39/72 (54%), Positives = 51/72 (70%) Frame = -1 Query: 306 TRTLXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYR 127 +RTL VH +L D+V+P EIVGKRVRY + G K+ K+ LD K+ +YKLE+F AVY Sbjct: 115 SRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYN 174 Query: 126 RLCGKDVVFEYP 91 +L GK +VFE P Sbjct: 175 KLTGKQIVFEIP 186
>RS7_ANOGA (P33514) 40S ribosomal protein S7| Length = 192 Score = 83.2 bits (204), Expect = 2e-16 Identities = 33/69 (47%), Positives = 56/69 (81%) Frame = -1 Query: 297 LXXVHXGILXDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLC 118 + V+ IL D+V+PAE+VGKR+R +LDG+++IK++LD ++ E+K++TF++VY++L Sbjct: 120 VTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLT 179 Query: 117 GKDVVFEYP 91 G+DV FE+P Sbjct: 180 GRDVTFEFP 188
>LEU1_BUCAI (Q9ZEY8) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 519 Score = 32.0 bits (71), Expect = 0.41 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = -1 Query: 267 DVVYPAEIVGKRVRYRL---DGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCG-KDVVF 100 +++ P+ I K V+ L G +K Y+D NN++Y ++ + +L K VF Sbjct: 312 EIMEPSSIGLKEVKLNLTSRSGRAAVKHYMDEMGYNNSDYNIDELYTAFLKLADKKGQVF 371 Query: 99 EYPVAATA 76 +Y + A A Sbjct: 372 DYDLEALA 379
>YWBO_BACSU (P39598) Hypothetical protein ywbO| Length = 200 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -2 Query: 152 WRPSLQSTAGFAGKTLSLSTLWPQPHEDQCLECLHFISSY 33 W+ S+Q A G ++ + P P+ D E HF Y Sbjct: 61 WQTSIQPMAEKLGVEINFPNVSPHPYTDLAFEGFHFAKEY 100
>PGK_EMENI (P11977) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 421 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Frame = -1 Query: 264 VVYPAEIVGK--RVRYRLD-GAKVIKIYLD---PKERNNTEYKLETFSAVYRRLCGKDVV 103 + P IVG ++Y +D GAK + + P + N +Y L+ + L G+DV+ Sbjct: 37 ITNPQRIVGALPTIKYAIDNGAKAVILMSHLGRPDGKKNPKYSLKPVVPKLKELLGRDVI 96 Query: 102 F 100 F Sbjct: 97 F 97
>INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)| Length = 2190 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 63 ALVFMRLRPQGTQRQRLSRKACGRLQRRSPACIQCCC 173 +LV + L T+ Q AC +Q R P + CCC Sbjct: 1734 SLVELILAEAETRSQDGDTAACSLIQARLPLLLSCCC 1770 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,159,911 Number of Sequences: 219361 Number of extensions: 883596 Number of successful extensions: 2745 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2745 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
