ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24e07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 206 bits (104), Expect = 1e-50 Identities = 108/110 (98%) Strand = Plus / Minus Query: 1 taaacgantcatgactggaagcaaggggagacgcgatcgaccacacggacggacggncgg 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 899 taaacgactcatgactggaagcaaggggagacgcgatcgaccacacggacggacgggcgg 840 Query: 61 gcggggggcaggcggcggtgagcttagtagtcggtggtggggagctgctc 110 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 839 gcggggggcaggcggcggtgagcttagtagtcggtggtggggagctgctc 790 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 763 gagctgctcttcatctccc 781
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Plus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 2544716 ggcggcgatgagcttagtagtcggtggtggggagctgctc 2544755
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 125378 ggcggcgatgagcttagtagtcggtggtggggagctgctc 125339
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Plus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 2544826 ggcggcgatgagcttagtagtcggtggtggggagctgctc 2544865
>dbj|D25534.1|RICYK333 Oryza sativa yk333 mRNA for gamma-Tip, complete cds Length = 1080 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 844 ggcggcgatgagcttagtagtcggtggtggggagctgctc 805
>dbj|AK110727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E06, full insert sequence Length = 1024 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Plus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 167 ggcggcgatgagcttagtagtcggtggtggggagctgctc 206
>dbj|AK104123.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C12, full insert sequence Length = 1034 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 853 ggcggcgatgagcttagtagtcggtggtggggagctgctc 814
>dbj|AK068986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E16, full insert sequence Length = 1082 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 855 ggcggcgatgagcttagtagtcggtggtggggagctgctc 816
>dbj|AK060994.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E02, full insert sequence Length = 870 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 689 ggcggcgatgagcttagtagtcggtggtggggagctgctc 650
>dbj|AK059438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G11, full insert sequence Length = 551 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 379 ggcggcgatgagcttagtagtcggtggtggggagctgctc 340
>dbj|AK058322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B06, full insert sequence Length = 1055 Score = 71.9 bits (36), Expect = 4e-10 Identities = 39/40 (97%) Strand = Plus / Minus Query: 71 ggcggcggtgagcttagtagtcggtggtggggagctgctc 110 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 851 ggcggcgatgagcttagtagtcggtggtggggagctgctc 812
>emb|AJ242805.1|SST242805 Sporobolus stapfianus mRNA for putative gamma tonoplast intrinsic protein (TIP) Length = 1146 Score = 58.0 bits (29), Expect = 6e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 82 gcttagtagtcggtggtggggagctgctc 110 ||||||||||||||||||||||||||||| Sbjct: 837 gcttagtagtcggtggtggggagctgctc 809
>ref|XM_470213.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 54.0 bits (27), Expect = 9e-05 Identities = 27/27 (100%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 ||||||||||||||||||||||||||| Sbjct: 753 ttagtagtcggtggtggggagctgctc 727
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 86 agtagtcggtggtggggagctgctc 110 ||||||||||||||||||||||||| Sbjct: 845 agtagtcggtggtggggagctgctc 821 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 794 gagctgctcttcatctccc 812
>gb|BT016300.1| Zea mays clone Contig133 mRNA sequence Length = 1112 Score = 46.1 bits (23), Expect = 0.023 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 |||||||||||||| |||||||||||| Sbjct: 850 ttagtagtcggtggaggggagctgctc 824 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 797 gagctgctcttcatctccc 815
>gb|AY243803.1| Zea mays tonoplast water channel (TIP1-1) mRNA, complete cds Length = 1039 Score = 46.1 bits (23), Expect = 0.023 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 |||||||||||||| |||||||||||| Sbjct: 754 ttagtagtcggtggaggggagctgctc 728 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 701 gagctgctcttcatctccc 719
>dbj|AB206104.1| Mimosa pudica tip1;1 mRNA for tonoplast intrinsic protein 1;1, complete cds Length = 1067 Score = 46.1 bits (23), Expect = 0.023 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 |||||| |||||||||||||||||||| Sbjct: 826 ttagtaatcggtggtggggagctgctc 800
>gb|AY104464.1| Zea mays PCO114899 mRNA sequence Length = 1167 Score = 46.1 bits (23), Expect = 0.023 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 |||||||||||||| |||||||||||| Sbjct: 849 ttagtagtcggtggaggggagctgctc 823 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 796 gagctgctcttcatctccc 814
>gb|AF037061.1|AF037061 Zea mays tonoplast intrinsic protein (ZmTIP1) mRNA, complete cds Length = 1097 Score = 46.1 bits (23), Expect = 0.023 Identities = 26/27 (96%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 |||||||||||||| |||||||||||| Sbjct: 846 ttagtagtcggtggaggggagctgctc 820 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gagctgctcttcatctccc 120 ||||||||||||||||||| Sbjct: 793 gagctgctcttcatctccc 811
>gb|AY130971.1| Brassica oleracea var. botrytis tonoplast intrinsic protein bobTIP26-2 gene, complete cds Length = 1442 Score = 44.1 bits (22), Expect = 0.091 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 agtagtcggtggtggggagctg 107 |||||||||||||||||||||| Sbjct: 1247 agtagtcggtggtggggagctg 1226
>gb|U92652.2|BOU92652 Brassica oleracea var. botrytis tonoplast intrinsic protein bobTIP26-2 mRNA, partial cds Length = 599 Score = 44.1 bits (22), Expect = 0.091 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 agtagtcggtggtggggagctg 107 |||||||||||||||||||||| Sbjct: 526 agtagtcggtggtggggagctg 505
>gb|AF521135.1| Kandelia candel tonoplast intrinsic protein (TIP) mRNA, complete cds Length = 1099 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Minus Query: 82 gcttagtagtcggtggtggggagctgctc 110 ||||||||||| | ||||||||||||||| Sbjct: 859 gcttagtagtcagcggtggggagctgctc 831
>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence Length = 148259 Score = 42.1 bits (21), Expect = 0.36 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cacacggacggacggncgggcggg 65 ||||||||||||||| |||||||| Sbjct: 37516 cacacggacggacggacgggcggg 37493
>emb|X72581.1|ATGTIPMR A.thaliana mRNA for tonoplast intrinsic protein gamma (gamma-TIP) Length = 933 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 agtagtcggtggtggggagctgctc 110 ||||||||||||| ||||||||||| Sbjct: 787 agtagtcggtggttgggagctgctc 763
>emb|AL390091.1|NCB12F1 Neurospora crassa DNA linkage group II BAC clone B12F1 Length = 68478 Score = 42.1 bits (21), Expect = 0.36 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cacacggacggacggncgggcggg 65 ||||||||||||||| |||||||| Sbjct: 42887 cacacggacggacggacgggcggg 42910
>emb|AL450405.1| Human DNA sequence from clone RP11-632C17 on chromosome 6 Contains the gene for a novel protein similar to ribosomal protein L29 (RPL29) (probably a pseudogene), complete sequence Length = 70354 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gtggtggggagctgctcttc 113 |||||||||||||||||||| Sbjct: 36968 gtggtggggagctgctcttc 36987
>gb|AC020922.9| Homo sapiens chromosome 19 clone CTD-2105E13, complete sequence Length = 134793 Score = 40.1 bits (20), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 54 cggncgggcggggggcaggcggc 76 ||| ||||||||||||||||||| Sbjct: 78789 cgggcgggcggggggcaggcggc 78811
>gb|AY207429.1| Homo sapiens interleukin 11 (IL11) gene, complete cds Length = 9803 Score = 40.1 bits (20), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 54 cggncgggcggggggcaggcggc 76 ||| ||||||||||||||||||| Sbjct: 1449 cgggcgggcggggggcaggcggc 1427
>gb|M81890.1|HUMIL11A Human interleukin 11 (IL11) gene, complete mRNA Length = 6870 Score = 40.1 bits (20), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 54 cggncgggcggggggcaggcggc 76 ||| ||||||||||||||||||| Sbjct: 688 cgggcgggcggggggcaggcggc 666
>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence Length = 196086 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gactggaagcaaggggaga 31 ||||||||||||||||||| Sbjct: 55626 gactggaagcaaggggaga 55644
>gb|U14107.1| Bovine herpesvirus 1 BHV1.2 isolate M glycoprotein (gI) gene, partial cds Length = 577 Score = 38.2 bits (19), Expect = 5.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 45 acggacggacggncgggcgggg 66 |||||||||||| ||||||||| Sbjct: 477 acggacggacggtcgggcgggg 456
>gb|U14106.1| Bovine herpesvirus 1 BHV1.2 isolate K22 glycoprotein (gI) gene, partial cds Length = 588 Score = 38.2 bits (19), Expect = 5.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 45 acggacggacggncgggcgggg 66 |||||||||||| ||||||||| Sbjct: 474 acggacggacggtcgggcgggg 453
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 28397 cgggcggtgggcaggcggcggtg 28375
>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete sequence Length = 212090 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tcatgactggaagcaaggg 27 ||||||||||||||||||| Sbjct: 38096 tcatgactggaagcaaggg 38078
>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence Length = 239758 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gactggaagcaaggggaga 31 ||||||||||||||||||| Sbjct: 203438 gactggaagcaaggggaga 203420
>emb|AL590343.1|CEY66A7AL Caenorhabditis elegans YAC Y66A7AL, complete sequence Length = 15844 Score = 38.2 bits (19), Expect = 5.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 45 acggacggacggncgggcggggggca 70 |||||||||||| ||| ||||||||| Sbjct: 1042 acggacggacggacggacggggggca 1067
>gb|AC125453.6| Homo sapiens chromosome 8, clone RP11-1049H7, complete sequence Length = 186608 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gtagtcggtggtggggagc 105 ||||||||||||||||||| Sbjct: 107760 gtagtcggtggtggggagc 107742
>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence Length = 196923 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tcatgactggaagcaaggg 27 ||||||||||||||||||| Sbjct: 155166 tcatgactggaagcaaggg 155148
>ref|XM_851400.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 11 (LOC479191), mRNA Length = 4681 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_536333.2| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 1 (LOC479191), mRNA Length = 4681 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_851314.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 10 (LOC479191), mRNA Length = 4663 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_851274.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 9 (LOC479191), mRNA Length = 4438 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_851189.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 7 (LOC479191), mRNA Length = 4777 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_851152.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 6 (LOC479191), mRNA Length = 4696 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>ref|XM_851023.1| PREDICTED: Canis familiaris similar to actinin, alpha 2, transcript variant 3 (LOC479191), mRNA Length = 4681 Score = 38.2 bits (19), Expect = 5.6 Identities = 30/34 (88%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggggggcaggcggcgg 78 |||||||||||| | ||||||| || |||||||| Sbjct: 124 acggacggacgggccggcggggcgcgggcggcgg 91
>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160000 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 ggtggggagctgctcttcatctc 118 ||||||||||| ||||||||||| Sbjct: 45021 ggtggggagcttctcttcatctc 45043
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 126464 ggcggggggcaggcggcgg 126482 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 786 ggcggggggcaggcggcgg 768
>gb|BC095664.1| Danio rerio zgc:112069, mRNA (cDNA clone MGC:112069 IMAGE:7414260), complete cds Length = 3336 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ggggggcaggcggcggtga 81 ||||||||||||||||||| Sbjct: 3218 ggggggcaggcggcggtga 3200
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 112907 cgggcggtgggcaggcggcggtg 112885
>ref|NM_001018154.1| Danio rerio zgc:112069 (zgc:112069), mRNA Length = 3336 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ggggggcaggcggcggtga 81 ||||||||||||||||||| Sbjct: 3218 ggggggcaggcggcggtga 3200
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 25800564 cgggcggtgggcaggcggcggtg 25800542
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 19506138 cgggcggtgggcaggcggcggtg 19506160 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 17155624 ggcggggggcaggcggcgg 17155606
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ggggcaggcggcggtgagc 83 ||||||||||||||||||| Sbjct: 7858409 ggggcaggcggcggtgagc 7858427
>gb|DQ149924.1| Human herpesvirus 2 strain 333 nonfunctional ICP34.5 (RL1) gene, complete sequence Length = 903 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 308 ggcggggggcaggcggcgg 290
>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence Length = 145059 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tcatgactggaagcaaggg 27 ||||||||||||||||||| Sbjct: 62806 tcatgactggaagcaaggg 62824
>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0431E05 Length = 146091 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ggggcaggcggcggtgagc 83 ||||||||||||||||||| Sbjct: 72791 ggggcaggcggcggtgagc 72809
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 49482 cgggcggtgggcaggcggcggtg 49504
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 108750 ggcggggggcaggcggcgg 108732
>emb|AJ605573.1| Ricinus communis mRNA for aquaporin (Tip1-1 gene), clone pT4L Length = 1057 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 84 ttagtagtcggtggtggggagctgctc 110 ||||||||| ||||| ||||||||||| Sbjct: 804 ttagtagtcagtggtagggagctgctc 778
>emb|AL032622.1|CEY66A7A Caenorhabditis elegans cosmid Y66A7A, complete sequence Length = 43395 Score = 38.2 bits (19), Expect = 5.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 45 acggacggacggncgggcggggggca 70 |||||||||||| ||| ||||||||| Sbjct: 1042 acggacggacggacggacggggggca 1067
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||||||||| ||||||||| Sbjct: 2074502 cgggcggggggcatgcggcggtg 2074480
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 cgggcggggggcaggcggcggtg 80 ||||||| ||||||||||||||| Sbjct: 26119234 cgggcggtgggcaggcggcggtg 26119212
>emb|CR388420.19| Zebrafish DNA sequence from clone DKEY-37H18 in linkage group 13, complete sequence Length = 121689 Score = 38.2 bits (19), Expect = 5.6 Identities = 28/30 (93%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 45 acggacggacggncgggcggg-gggcaggc 73 |||||||||||| |||||||| |||||||| Sbjct: 73155 acggacggacggacgggcgggcgggcaggc 73126
>emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, complete sequence Length = 167472 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 ggggggcaggcggcggtga 81 ||||||||||||||||||| Sbjct: 79205 ggggggcaggcggcggtga 79223
>dbj|D10471.1|HS2ULIR Herpes simplex virus type 2 genomic DNA for 0.74-0.84 region, complete cds Length = 13680 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 ggcggggggcaggcggcgg 78 ||||||||||||||||||| Sbjct: 12833 ggcggggggcaggcggcgg 12851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 698,585 Number of Sequences: 3902068 Number of extensions: 698585 Number of successful extensions: 60931 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60647 Number of HSP's gapped (non-prelim): 282 length of query: 121 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 100 effective length of database: 17,151,101,840 effective search space: 1715110184000 effective search space used: 1715110184000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
