>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 196
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841

>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 196
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841

>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 196
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839

>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 196
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 80   PEPTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 187
            P P   +G+K E   P +GG  G    +    PPGP
Sbjct: 2691 PGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGP 2726

>CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)|
          Length = 471

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 80  PEPTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 187
           P P   +GK  E   P   G TGEK  + C    GP
Sbjct: 184 PGPCGPKGKPGEDGPPGTPGPTGEKGNKGCKGEQGP 219

>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 86   PTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 187
            P   RG   E  +P   GG G K  E    PPGP
Sbjct: 980  PAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGP 1013

>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 86   PTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 187
            P   RG   E  +P   GG G K  E    PPGP
Sbjct: 980  PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGP 1013


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,309,253
Number of Sequences: 219361
Number of extensions: 695591
Number of successful extensions: 2187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)