ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24e01 |
|---|---|
| Clone Library Name | barley_pub |
>NELFA_DROME (Q86NP2) Negative elongation factor A homolog| Length = 1248 Score = 32.0 bits (71), Expect = 1.2 Identities = 29/92 (31%), Positives = 38/92 (41%) Frame = +2 Query: 221 KKQPIPFGTPRKTSLSSMAYMAHTPPLXXXXXXXXXGMYSTLLEAITVLTAASGDPYMNT 400 ++QPI P TS S M T L G T I + T+ S M Sbjct: 743 QQQPI---LPTLTSFSHSRPMPQTTTLYQATTPSGSGQTPT---KILLKTSGSSSVVMTP 796 Query: 401 LRQAQINPMTMIFMSSPPMANVVATNTIPKNP 496 LRQAQ T + S+PP +VAT+ +P Sbjct: 797 LRQAQPQQATAVVSSNPP--PLVATSAAVVSP 826
>ATOE_HAEIN (P44051) Short-chain fatty acids transporter| Length = 447 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -1 Query: 498 IGFFGIVFVATTFAIGGLDMKIIVIGLICACLSVFMYGSPLAAVRTVI-ASRS 343 IG G ++ F G ++ I + LI + ++GSP+A +R +I A+RS Sbjct: 257 IGALGYSYLGMYFYKNGFNLTINNVNLIFLITGIVLHGSPMAYMRAIINATRS 309
>AMYA_PYRFU (P49067) Alpha-amylase (EC 3.2.1.1)| Length = 648 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 17 LHNHYSTGXFGHIVHHYTRMETSFWPYLRSSEDRRDVEASYATS 148 +HNH G FG + E +WP+L + E+ +++ + TS Sbjct: 10 IHNHQPLGNFGWVFEE--AYEKCYWPFLETLEEYPNMKVAIHTS 51
>LGT_XYLFT (Q87BT3) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 301 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Frame = +2 Query: 5 NYIXLHNHYSTGXFGHIVHHYTRMETSF----------WPYLRSSEDRRDVEASYATSSL 154 N++ + HY+ G GH H +++ +F W + R R YA S L Sbjct: 182 NFVQIQEHYAAGLLGHYARHPSQLYEAFLEGLVMFIVLWLFSRKPRPR------YAVSGL 235 Query: 155 F 157 F Sbjct: 236 F 236
>LGT_XYLFA (Q9PB12) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 301 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Frame = +2 Query: 5 NYIXLHNHYSTGXFGHIVHHYTRMETSF----------WPYLRSSEDRRDVEASYATSSL 154 N++ + HY+ G GH H +++ +F W + R R YA S L Sbjct: 182 NFVQIQEHYAAGLLGHYARHPSQLYEAFLEGLVMFIVLWLFSRKPRPR------YAVSGL 235 Query: 155 F 157 F Sbjct: 236 F 236
>HRCA_NODSP (Q84B70) Heat-inducible transcription repressor hrcA| Length = 365 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 96 IYGHQKTEEMSKHRMPLRHCSETDIQPYCSCT--PRR*PAGCLPRSSLSHLGP 248 I+ +TEE K ++ +R +E ++P +CT G LP S+ LGP Sbjct: 289 IFAEPETEEAGKSKVTVRIGTENPLEPIRTCTLITSTYRRGLLPVGSVGVLGP 341
>YFBJ_SHIFL (Q83KB5) UPF0188 membrane protein yfbJ| Length = 128 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -1 Query: 477 FVATTFAIGGLDMKIIVIGLICACLSVFMYGSPL--AAVRTVIASRSVEYMPXXXXXXXX 304 F+A A G LD +I+++GL+ LSVF + L A+ A S+ Y+ Sbjct: 36 FIAALLAFG-LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVL 94 Query: 303 LN-GGVWAMYAILDRDVFLGVPNGIGCFLGGIQLVIYAAYK 184 G +++ A+L G+ C + G+ L+ K Sbjct: 95 PGWEGTFSLKALL----------GVACIMSGLMLIFLPTTK 125
>YFBJ_ECOLI (P76474) UPF0188 membrane protein yfbJ| Length = 128 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -1 Query: 477 FVATTFAIGGLDMKIIVIGLICACLSVFMYGSPL--AAVRTVIASRSVEYMPXXXXXXXX 304 F+A A G LD +I+++GL+ LSVF + L A+ A S+ Y+ Sbjct: 36 FIAALLAFG-LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVL 94 Query: 303 LN-GGVWAMYAILDRDVFLGVPNGIGCFLGGIQLVIYAAYK 184 G +++ A+L G+ C + G+ L+ K Sbjct: 95 PGWEGTFSLKALL----------GVACIMSGLMLIFLPTTK 125
>YFBJ_ECOL6 (Q8FFL7) UPF0188 membrane protein yfbJ| Length = 128 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -1 Query: 477 FVATTFAIGGLDMKIIVIGLICACLSVFMYGSPL--AAVRTVIASRSVEYMPXXXXXXXX 304 F+A A G LD +I+++GL+ LSVF + L A+ A S+ Y+ Sbjct: 36 FIAALLAFG-LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVL 94 Query: 303 LN-GGVWAMYAILDRDVFLGVPNGIGCFLGGIQLVIYAAYK 184 G +++ A+L G+ C + G+ L+ K Sbjct: 95 PGWEGTFSLKALL----------GVACIMSGLMLIFLPTTK 125
>YFBJ_ECO57 (Q8XDY7) UPF0188 membrane protein yfbJ| Length = 128 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -1 Query: 477 FVATTFAIGGLDMKIIVIGLICACLSVFMYGSPL--AAVRTVIASRSVEYMPXXXXXXXX 304 F+A A G LD +I+++GL+ LSVF + L A+ A S+ Y+ Sbjct: 36 FIAALLAFG-LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVL 94 Query: 303 LN-GGVWAMYAILDRDVFLGVPNGIGCFLGGIQLVIYAAYK 184 G +++ A+L G+ C + G+ L+ K Sbjct: 95 PGWEGTFSLKALL----------GVACIMSGLMLIFLPTTK 125
>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)| Length = 376 Score = 28.9 bits (63), Expect = 10.0 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 6/128 (4%) Frame = +1 Query: 130 SIVCHFVIVRRLTSNLTVLVRRVDNQLDASQEAAYPIWDPEEDISVEYGIHG----PHAT 297 S++CH V + ++T+L R++D ++D + + +E I G AT Sbjct: 242 SVLCHAVSASSVKIDVTILQRKID-EMDIPNDVSESFERYKELIQELCQSSGNNLYEEAT 300 Query: 298 VXXXXXXXXXXHVLH--APRGDHRSHGGEWGPIHEHAKASTNQSNDYDFHVKSTNGECCG 471 LH + G S + P H H + Q + Y H + Sbjct: 301 SSYAIRSPLTASPLHVVSTNGCGPSSSSQSTPPHLHPPSQATQPHHYSHHQSQSQ----Q 356 Query: 472 HEHDPEKP 495 H H P+ P Sbjct: 357 HHHRPQSP 364
>URIC_ASPFL (Q00511) Uricase (EC 1.7.3.3) (Urate oxidase)| Length = 301 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +2 Query: 5 NYIXLHNHYSTGXFGHIVHHYTRMETSFWP----YLRSSEDRRDVE 130 ++I +NH + H +TRM+ P ++R SE++R+V+ Sbjct: 86 HFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQ 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,265,779 Number of Sequences: 219361 Number of extensions: 1588398 Number of successful extensions: 4502 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4502 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
