ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23o22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 109 9e-24
2HSC90_DICDI (P54651) Heat shock cognate 90 kDa protein 30 6.6
3SUWA_DROME (P12297) Protein suppressor of white apricot 30 6.6

>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score =  109 bits (272), Expect = 9e-24
 Identities = 52/92 (56%), Positives = 67/92 (72%)
 Frame = -2

Query: 648 VPAGQVTFRAKVAKGSRLENRGAYPEEFGVTASYKGQGRIAQPGFKNPRWVDGELLVLNG 469
           VPAG+V FRAK+ +   L ++G  PEEFGV A YKGQGR+A PGF+NPRWVDGEL++L+G
Sbjct: 594 VPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDG 653

Query: 468 KSAIPHIGGAELGFLYSVPEQSFLVLFDRLTL 373
           K      GG  +GF+Y  PE  F++ F+RL L
Sbjct: 654 KYV---KGGPVVGFVYWAPEYHFVMFFNRLRL 682



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>HSC90_DICDI (P54651) Heat shock cognate 90 kDa protein|
          Length = 700

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 508 VFESRLRYSPLTFITSSHTKLFWVCTT--ILKTTALRNLSTESYLSSRDT 651
           V  +RL  SP   +TS +    W      I+K  ALR+ S  SY+SS+ T
Sbjct: 555 VLSTRLANSPCVLVTSEYG---WSANMERIMKAQALRDSSMSSYMSSKKT 601



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>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 326 THERTSSYQRDLAHSGSV---RRSKRTRKLCSGTLYRKPSSAPP 448
           TH R+ S  +++  S S    R S R R+  S  L R+PSS PP
Sbjct: 837 THRRSRSRSKNVRSSDSSPSSRESSRRRRQKSSRLSREPSSNPP 880


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,977,845
Number of Sequences: 219361
Number of extensions: 1940288
Number of successful extensions: 5181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5179
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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