ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23o21 |
|---|---|
| Clone Library Name | barley_pub |
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 153 bits (387), Expect = 4e-37 Identities = 79/124 (63%), Positives = 87/124 (70%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR +EAK+KGRHSGYGKR+GTREARLPTKI KYRE+KKID+HMYH Sbjct: 62 RARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRL 276 DMY+KVKGN+FKNKRVLMESIHK KAEKAREKTL+DQF RL Sbjct: 122 DMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERL 181 Query: 275 AQGP 264 AQGP Sbjct: 182 AQGP 185
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 152 bits (383), Expect = 1e-36 Identities = 78/124 (62%), Positives = 88/124 (70%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR+ + AK+KGRHSGYGKR+GTREARLPTK+ +KYRE KKID+HMYH Sbjct: 62 RARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRL 276 DMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF RL Sbjct: 122 DMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181 Query: 275 AQGP 264 A+GP Sbjct: 182 AKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 151 bits (381), Expect = 2e-36 Identities = 78/124 (62%), Positives = 86/124 (69%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR+ AK KGRHSGYGKR+GTREARLPTK+ +KYRE KKIDKHMYH Sbjct: 62 RARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRL 276 DMY++VKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF RL Sbjct: 122 DMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181 Query: 275 AQGP 264 A+GP Sbjct: 182 AKGP 185
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 121 bits (304), Expect = 2e-27 Identities = 56/97 (57%), Positives = 72/97 (74%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ EA++KGRH G+GKR+GT AR+PTK+ +KYR++KKID+H+YH Sbjct: 62 RVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 D+Y+K KGN+FKNKRVLME IHK KAEK R K L+DQ Sbjct: 122 DLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQ 158
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 117 bits (293), Expect = 3e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 117 bits (292), Expect = 4e-26 Identities = 56/97 (57%), Positives = 71/97 (73%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 114 bits (286), Expect = 2e-25 Identities = 55/97 (56%), Positives = 70/97 (72%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YREAKKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 122 SLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 113 bits (283), Expect = 4e-25 Identities = 54/97 (55%), Positives = 70/97 (72%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ A++KGRH G GKR+GT AR+P K+ R+YRE+KKID+HMYH Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 122 SLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 110 bits (276), Expect = 3e-24 Identities = 57/97 (58%), Positives = 66/97 (68%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR + AK+ GRH G G R GTREARLP+KI +KYREAKKIDKH Y Sbjct: 62 RAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYR 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 ++YLK KGN+FKNKR L+E I KSK EK REK + DQ Sbjct: 122 ELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 108 bits (269), Expect = 2e-23 Identities = 52/97 (53%), Positives = 66/97 (68%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR EA++KGRH+GYGKRRGT AR+P K R+YR+AKK+DKH+YH Sbjct: 62 RAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYH 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 ++YL+ KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 122 ELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 104 bits (259), Expect = 3e-22 Identities = 49/97 (50%), Positives = 66/97 (68%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R R+ H AK+ GRH+GYGKR+GT EAR+P+ + RKYRE+ KIDKH+YH Sbjct: 61 RIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYH 120 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 +YL+ KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 121 TLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 102 bits (253), Expect = 1e-21 Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 1/95 (1%) Frame = -1 Query: 626 RAH-EAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYHDM 450 RAH ++K++GRHSGYGKR+GTREARLP+++ KYR+A KIDKH+YH + Sbjct: 63 RAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVL 122 Query: 449 YLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 345 Y + KGN FK+KR L+E I ++KA+ REK L+++ Sbjct: 123 YKESKGNAFKHKRALVEHIIQAKADAQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 63.2 bits (152), Expect = 6e-10 Identities = 33/77 (42%), Positives = 42/77 (54%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR HE K+KGRH G G R+G + AR+ K RK +E KKID+ Y Sbjct: 62 RARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYR 121 Query: 455 DMYLKVKGNMFKNKRVL 405 +Y++ KG FKNK L Sbjct: 122 MLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 62.4 bits (150), Expect = 1e-09 Identities = 34/90 (37%), Positives = 46/90 (51%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR HE K+KGRH G G R+G + AR+ K RK +E KKID+ Y Sbjct: 62 RARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYR 121 Query: 455 DMYLKVKGNMFKNKRVLMESIHKSKAEKAR 366 +Y++ KG FK+K L + + K R Sbjct: 122 MLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 59.7 bits (143), Expect = 7e-09 Identities = 31/77 (40%), Positives = 41/77 (53%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RA+ HE K+KGRH G G R+G + AR+ K RK + KKID+ Y Sbjct: 62 RAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYR 121 Query: 455 DMYLKVKGNMFKNKRVL 405 +Y++ KG FKNK L Sbjct: 122 MLYIRAKGGQFKNKHQL 138
>RL19_METJA (P54043) 50S ribosomal protein L19e| Length = 151 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R ++ E ++KGR G G RRG AR P K ++ R++ KID+ +Y Sbjct: 64 RVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYR 123 Query: 455 DMYLKVKGNMFKNK 414 +Y KG F+++ Sbjct: 124 KLYRMAKGGAFRSR 137
>RL19_METVA (P14024) 50S ribosomal protein L19e (ORF E)| Length = 149 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 R + E K+KG+ G G RRG + AR P K ++ RE +KI++ Y Sbjct: 61 RKKEVQEQKRKGKRKGPGSRRGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYR 120 Query: 455 DMYLKVKGNMFKNK 414 +Y KG F+++ Sbjct: 121 KLYRMAKGGAFRSR 134
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Frame = -1 Query: 626 RAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYHDMY 447 R H+ + KG +G R+G AR K R R+ IDKH Y +Y Sbjct: 66 RKHKRRSKGEGRKHGSRKGKSGARTGDKEIWINKIRKIRRYIRWLRDNNVIDKHTYRLLY 125 Query: 446 LKVKGNMFKN----KRVLMESIHK 387 + KGN FKN K L + HK Sbjct: 126 KRAKGNYFKNLSDVKSYLRQMGHK 149
>RL19_ARCFU (O28372) 50S ribosomal protein L19e| Length = 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = -1 Query: 611 KQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYHDMYLKVKG 432 K+KGR G+G R+G + AR+P K R+ + +D+ Y +Y K KG Sbjct: 72 KRKGRRRGHGSRKGAKGARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILYRKAKG 131 Query: 431 NMFKN 417 F++ Sbjct: 132 GEFRS 136
>RL19_AERPE (Q9YF93) 50S ribosomal protein L19e| Length = 155 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -1 Query: 620 HEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYHDMYLK 441 H ++KGR G G+R+G ARL K R R+ + ID+ Y +Y+ Sbjct: 68 HLQRRKGRRRGMGRRKGVATARLDPKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLYML 127 Query: 440 VKGNMFKN 417 KG F++ Sbjct: 128 AKGGTFRD 135
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/70 (31%), Positives = 34/70 (48%) Frame = -1 Query: 629 RRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYHDM 450 R+ K +G+ SG R+G + AR +K + R+ K ID+H Y ++ Sbjct: 67 RKKRSLKSEGKKSG--SRKGKKGARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYREL 124 Query: 449 YLKVKGNMFK 420 YLK KG +K Sbjct: 125 YLKTKGGNYK 134
>NU1M_RAT (P03889) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = +1 Query: 364 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 486 +L S LWI + + LL+ N LPLT + WY+ L IF A Sbjct: 263 TLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLA 312
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = +1 Query: 364 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 489 +L ++L LWI + + LL+ N LPLT + WY+ LS AS Sbjct: 263 TLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLTLLMWYISLSTMIAS 313
>RL19_HALMA (P14119) 50S ribosomal protein L19e (Hmal19) (Hl24)| Length = 148 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/71 (26%), Positives = 27/71 (38%) Frame = -1 Query: 635 RARRAHEAKQKGRHSGYGKRRGTREARLPTKIXXXXXXXXXXXXXRKYREAKKIDKHMYH 456 RAR + + G G G R+G AR +K R+ R+ + Y Sbjct: 61 RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120 Query: 455 DMYLKVKGNMF 423 D+Y K G F Sbjct: 121 DLYDKAGGGEF 131
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 328 PRARQAGRGRLPGGRRDWPRAP 263 PR R+ RGR G RRDW RAP Sbjct: 59 PRRRRGNRGR--GQRRDWSRAP 78
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 11/47 (23%) Frame = -2 Query: 376 RRQERRPYLTSLRPSVPRARQAG--------RGRLPG---GRRDWPR 269 R QER+P+ ++R +V RA++AG GRL G R +W R Sbjct: 125 RLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVR 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,442,301 Number of Sequences: 219361 Number of extensions: 1042652 Number of successful extensions: 3126 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3117 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
