>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1717

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 23/55 (41%), Positives = 27/55 (49%)
 Frame = -2

Query: 557 GAGRHRRLAAPQDLIHHAPAGPWDEAGGSDHFCRARRGREKPPLSDGDDAAGPTA 393
           GAGR RR  APQ +     A P   AGG  +    RRGR K  LS    AA  ++
Sbjct: 89  GAGRRRRRGAPQPIA--GGAAPVPGAGGGANSLLLRRGRLKRNLSAAAAAASSSS 141

>SPT5_YEAST (P27692) Transcription elongation factor SPT5 (Chromatin elongation|
            factor SPT5)
          Length = 1063

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 346  RIDDDHPRRPRSLRVQ--AVGPAASSPSERGGFSRPRRARQK*SDPPASSHGPAGA*WIR 519
            R+   +   PR++     A G AA+S    GG +    +      P  ++HG +G   + 
Sbjct: 872  RMGPSYVSAPRNMATGGIAAGAAATSSGLSGGMTPGWSSFDGGKTPAVNAHGGSGGGGVS 931

Query: 520  SWGAAS 537
            SWG AS
Sbjct: 932  SWGGAS 937

>COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 552

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 499 PVRGMRQAGRITSAELVGDGRNLPSPTVMTRPVRPPAPLASEDGE 365
           P    RQA R T+ +      N PS    T PV PP   A+  GE
Sbjct: 137 PPHRRRQAARRTAEQAASASSNAPSEAAQTTPVTPPP--AAPSGE 179

>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein|
          Length = 715

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -2

Query: 557 GAGRHRRLAAPQDLIHHAPAGPWDEAGGSDHFCRARRGREKPPLSDGDD-AAGPTAC 390
           G  R R  A P       P  P  +  G      A RGR  PPL D DD  A P  C
Sbjct: 461 GPARQRAPAPP-------PTSPTLDPRGHPAVPEAPRGRPAPPLPDADDPVAEPPGC 510

>ADA15_HUMAN (Q13444) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 15) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein 15) (MDC-15)
           (Metalloprotease RGD disintegrin protein) (Metargidin)
          Length = 814

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 505 RRPVRGMRQAGRITSAELVGDGRNLPSPTVMTRPVRPPAPLAS 377
           R+P+    Q GR  S +L G G  +P   V +RP  PP  ++S
Sbjct: 770 RKPLPADPQ-GRCPSGDLPGPGAGIPPLVVPSRPAPPPPTVSS 811

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
 Frame = +1

Query: 364 PRRPRSLRVQAVGPAASSPSERG--------GFSRP--RRARQK*SDPPASSHGPAGA*W 513
           PRR  S R    G A+ SP  R         G SRP  RR R+     PA  HGPAG   
Sbjct: 25  PRRCGSCRPPPPGSASPSPRPRRASCATGCCGRSRPYARRLRR-----PADGHGPAGGGR 79

Query: 514 IRSWGA 531
              W A
Sbjct: 80  TGRWYA 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,717,251
Number of Sequences: 219361
Number of extensions: 1702686
Number of successful extensions: 5506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5497
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)