>gb|AC133496.3| Mus musculus BAC clone RP24-386G2 from chromosome 13, complete sequence
          Length = 173924

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 43     tcccggaagtctttccaggtccctt 67
              ||||| |||||||||||||||||||
Sbjct: 148912 tcccgcaagtctttccaggtccctt 148888

>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
             Chd3 gene for chromodomain helicase DNA binding protein 3,
             five novel genes, the 3' end of the gene for a novel
             protein similar to dynein and four CpG islands, complete
             sequence
          Length = 165212

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    agtcacaggtggaatgccat 43
             ||||||||||||||||||||
Sbjct: 14909 agtcacaggtggaatgccat 14928

>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence
          Length = 127025

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    ccttattttcttctacagccaaaa 87
             |||||||||||||||||| |||||
Sbjct: 92212 ccttattttcttctacaggcaaaa 92189

>emb|CT009709.22| Mouse DNA sequence from clone RP23-113L3 on chromosome 16, complete
            sequence
          Length = 70995

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   tcccttattttcttctacag 81
            ||||||||||||||||||||
Sbjct: 8970 tcccttattttcttctacag 8951

>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete
              sequence
          Length = 196812

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     caaatgcgtcccagtcacag 31
              ||||||||||||||||||||
Sbjct: 169846 caaatgcgtcccagtcacag 169827

>gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, complete sequence
          Length = 158620

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    attttcttctacagccaaa 86
             |||||||||||||||||||
Sbjct: 95500 attttcttctacagccaaa 95482

>ref|XM_508646.1| PREDICTED: Pan troglodytes similar to hypothetical protein PP1665
           (LOC451427), mRNA
          Length = 2389

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 47  ggaagtctttccaggtccc 65
           |||||||||||||||||||
Sbjct: 165 ggaagtctttccaggtccc 147

>gb|AC163751.3| Pan troglodytes BAC clone CH251-352A15 from chromosome 2, complete
             sequence
          Length = 159606

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    ttttcttctacagccaaaa 87
             |||||||||||||||||||
Sbjct: 44369 ttttcttctacagccaaaa 44387

>ref|XM_737147.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000711.03.0)
            partial mRNA
          Length = 1221

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   caggtcccttattttcttc 76
            |||||||||||||||||||
Sbjct: 1018 caggtcccttattttcttc 1000

>gb|AC144617.10| Medicago truncatula clone mth2-7m9, complete sequence
          Length = 122853

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     gccaaaacggaatggcaat 99
              |||||||||||||||||||
Sbjct: 112282 gccaaaacggaatggcaat 112264

>emb|AJ617685.1| Escherichia coli pathogenicity island V, strain 536
          Length = 105801

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    catcccggaagtctttcca 59
             |||||||||||||||||||
Sbjct: 32284 catcccggaagtctttcca 32302

>gb|AF309805.1|AF309805 Pneumocystis carinii f. sp. carinii glutathione synthetase Gsh1 (gsh1)
             gene, partial cds; putative a-factor pheromone receptor
             Ste3 (ste3) gene, complete cds, alternatively spliced; and
             Ydr124wp-like protein, helix-loop-helix DNA binding
             protein, Yer049wp-like protein, protein kinase Ste20
             (ste20), putative sucrose carrier Sca1 (sca1), putative
             Na+/H+ exchanger Nhx1 (nhx1), putative 26S protease
             regulatory subunit 4 (mts2), hypothetical protein, glycyl
             tRNA synthetase, and coiled-coil protein genes, complete
             cds
          Length = 32083

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    tcccttattttcttctaca 80
             |||||||||||||||||||
Sbjct: 30908 tcccttattttcttctaca 30890

>gb|AC096649.1| Homo sapiens BAC clone RP11-12N7 from 2, complete sequence
          Length = 172718

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    gaagtctttccaggtccct 66
             |||||||||||||||||||
Sbjct: 61296 gaagtctttccaggtccct 61278

>emb|AL355075.6|CNS05TC9 Human chromosome 14 DNA sequence BAC R-203M5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 204654

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    ccttattttcttctacagc 82
             |||||||||||||||||||
Sbjct: 98569 ccttattttcttctacagc 98587

>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      ccttattttcttctacagc 82
               |||||||||||||||||||
Sbjct: 1762193 ccttattttcttctacagc 1762211

>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 63      cccttattttcttctacag 81
               |||||||||||||||||||
Sbjct: 5161937 cccttattttcttctacag 5161919

>dbj|AP002815.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-939C17
          Length = 174484

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    ggaagtctttccaggtccc 65
             |||||||||||||||||||
Sbjct: 91909 ggaagtctttccaggtccc 91927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,088,332
Number of Sequences: 3902068
Number of extensions: 1088332
Number of successful extensions: 72445
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72385
Number of HSP's gapped (non-prelim): 60
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)