ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 i... 46 0.050
2emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, co... 46 0.050
3gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.41... 42 0.77
4dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 0.77
5dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.1

>emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 in linkage group 6,
              complete sequence
          Length = 148605

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 47     ggcctcatctctggatgatggca 69
              |||||||||||||||||||||||
Sbjct: 134372 ggcctcatctctggatgatggca 134350



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>emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, complete sequence
          Length = 127643

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 47     ggcctcatctctggatgatggca 69
              |||||||||||||||||||||||
Sbjct: 113305 ggcctcatctctggatgatggca 113283



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>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
          Length = 203591

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     tggcctcatctctggatgatg 66
              |||||||||||||||||||||
Sbjct: 154447 tggcctcatctctggatgatg 154427



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>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete
              sequence
          Length = 200108

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     tggcctcatctctggatgatg 66
              |||||||||||||||||||||
Sbjct: 116968 tggcctcatctctggatgatg 116988



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>dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23
          Length = 33479

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aacacctatacatattgaaa 39
             ||||||||||||||||||||
Sbjct: 29908 aacacctatacatattgaaa 29927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,340,609
Number of Sequences: 3902068
Number of extensions: 1340609
Number of successful extensions: 27398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27393
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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