ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23o10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY266443.1| Hordeum vulgare MLA13-2 (Mla13-2) gene and LINE element Lauren, partial sequence; Copia/Ty1-like retrotransposon HORPIA-4 and Copia/Ty1-like retrotransposon HORPIA-5, complete sequence Length = 18901 Score = 543 bits (274), Expect = e-151 Identities = 286/290 (98%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11402 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 11461 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 11462 ccatagtcccttgtggacgtgtataaaagacaccctaggggttttgattgtaacaccaga 11521 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11522 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 11581 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11582 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 11641 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 11642 atcgcgtaggcacgcctgtacagctgcatatgcacgttcaaaagccaaca 11691 Score = 529 bits (267), Expect = e-147 Identities = 285/291 (97%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 16785 ttagaaaacaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 16844 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 16845 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 16904 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16905 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 16964 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16965 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 17024 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaacag 297 |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 17025 atcgcgtaggcacgcctgtatagctgcatacgcacattcaaaagccaacag 17075
>gb|AY266442.1| Hordeum vulgare LINE element Lauren, partial sequence; MLA6-2 (Mla6-2) gene, complete cds, alternatively spliced; Copia/Ty1-like retrotransposon HORPIA-4 and Copia/Ty1-like retrotransposon HORPIA-5, complete sequence Length = 17053 Score = 543 bits (274), Expect = e-151 Identities = 286/290 (98%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 10138 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 10197 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 10198 ccatagtcccttgtggacgtgtataaaagacaccctaggggttttgattgtaacaccaga 10257 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10258 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 10317 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10318 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 10377 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10378 atcgcgtaggcacgcctgtacagctgcatatgcacgttcaaaagccaaca 10427 Score = 529 bits (267), Expect = e-147 Identities = 285/291 (97%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 15521 ttagaaaacaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 15580 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 15581 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 15640 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15641 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 15700 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15701 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 15760 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaacag 297 |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 15761 atcgcgtaggcacgcctgtatagctgcatacgcacattcaaaagccaacag 15811
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 527 bits (266), Expect = e-146 Identities = 284/290 (97%) Strand = Plus / Minus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct: 184531 ttaggaaagaaagccaaaccgagtcctagtagtattagaattcctagtcctagtctattt 184472 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 184471 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 184412 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 184411 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaattcattg 184352 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184351 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 184292 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 184291 atcgcgtaggcacgcctgtacggctgcatacgcacgttcaaaagccaaca 184242 Score = 521 bits (263), Expect = e-145 Identities = 278/283 (98%) Strand = Plus / Minus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 179720 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 179661 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 179660 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 179601 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 179600 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaattcattg 179541 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179540 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 179481 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaa 289 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 179480 atcgcgtaggcacgcctgtacggctgcatacgcacgttcaaaa 179438
>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and MLA1 (Mla1) gene, complete cds Length = 18958 Score = 527 bits (266), Expect = e-146 Identities = 284/290 (97%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct: 14575 ttaggaaagaaagccaaaccgagtcctagtagtattagaattcctagtcctagtctattt 14634 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14635 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 14694 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 14695 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaattcattg 14754 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14755 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 14814 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 14815 atcgcgtaggcacgcctgtacggctgcatacgcacgttcaaaagccaaca 14864
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 519 bits (262), Expect = e-144 Identities = 283/290 (97%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2223 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 2282 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2283 tcatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 2342 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 2343 aaaacgaaaagcaatacaaagcaaaggcacgacacgagcctttagccatcaaatccatcg 2402 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2403 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagcctgccgaagcaaga 2462 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2463 atcgcgtaggcacgcctgtacagctgcatacgcactttcaaaagccaaca 2512
>gb|AF509768.1| Hordeum vulgare subsp. vulgare isolate NRG026 Rpg1 region, genomic sequence Length = 5371 Score = 504 bits (254), Expect = e-139 Identities = 281/290 (96%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | Sbjct: 3687 ttaggaaagaaagccaaaccaagtcctagtagtattaggattcctagtcctaatctattt 3746 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3747 tcatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaacaccaga 3806 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 3807 aaaacgaaaagcaatacaaagcaaaggcacgacacgagcctttagccatcaaatccatcg 3866 Query: 187 atcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaaga 246 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3867 atcagttttattcgtgtcgctagttacacaagttccgtcaagtagccggccgaagcaaga 3926 Query: 247 atcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3927 atcgcgtaggcacgcctttacagctgcatacgcacgttcaaaagccaaca 3976
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 490 bits (247), Expect = e-135 Identities = 281/291 (96%), Gaps = 1/291 (0%) Strand = Plus / Minus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 3323 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 3264 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 3263 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgactgtaacaccaga 3204 Query: 127 aaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcg 186 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 3203 aaaacgaaaagcaatacaaagcaaaagctcgacacgtgcctttagccatcaaatccatcg 3144 Query: 187 atcag-ttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaag 245 ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct: 3143 atcagtttttattcgtgtcgctagttacgcaagtaccgtcaagtagccggtcgaagcaag 3084 Query: 246 aatcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 3083 aatcgtgtaggcacgcctgtacagctacatacgcacgttcaaaagccaaca 3033 Score = 484 bits (244), Expect = e-133 Identities = 282/292 (96%), Gaps = 2/292 (0%) Strand = Plus / Minus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 8142 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctattt 8083 Query: 67 ccatagtcccttg-tggacgtgtataaaagacaccctaggggtgttgattgtaataccag 125 || ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 8082 ccgtaggcccttggtggacgtgtataaaagacaccctaggggtgttgattgtaacaccag 8023 Query: 126 aaaaacgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatc 185 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 8022 aaaaacgaaaagcaatacaaagcaaaagctcgacacgggcctttagccatcaaatccatc 7963 Query: 186 gatcag-ttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaa 244 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7962 gatcagtttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaa 7903 Query: 245 gaatcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 |||| | |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 7902 gaattgtgtaggcacgcctgtacagctacatacgcacgttcaaaagccaaca 7851
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 434 bits (219), Expect = e-118 Identities = 274/291 (94%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | Sbjct: 22711 ttaggaaagaaagccaaaccgagtcctagtagtattaggatacctagtcttagtctattt 22770 Query: 67 ccatagtcccttgtggacgtgtataaaagacaccctaggggtgttgattgtaataccaga 126 ||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||| Sbjct: 22771 tcatagtcccttgtggacgtgtataagaggcaccctaggggtgttgcttgtaacaccaga 22830 Query: 127 aaaa-cgaaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatc 185 |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22831 aaaaacgaacaacaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatc 22890 Query: 186 gatcagttttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaag 245 | ||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct: 22891 ggtcaattttattcgtgtcgctagttatgcaagttcagtcaagtagccgaccgaagcaag 22950 Query: 246 aatcgcgtaggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 22951 aatcgcgtaggcacgcctgtacggctgcatacgcacgttcaaaagccaaca 23001 Score = 246 bits (124), Expect = 7e-62 Identities = 154/164 (93%) Strand = Plus / Plus Query: 133 aaaagcaatacaaagcaaaggctcgacacgggcctttagccatcaaatccatcgatcagt 192 |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 18841 aaaaacaatacaaagcaaaggctcgacacgggtctttagccatcaaatccattgatcagt 18900 Query: 193 tttattcgtgtcgctagttacgcaagttccgtcaagtagccggccgaagcaagaatcgcg 252 ||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct: 18901 tttattcatgtcgctagttactcaagttccgtcaagtagccggccaaatcaagaatcgcg 18960 Query: 253 taggcacgcctgtacagctgcatacgcacgttcaaaagccaaca 296 |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 18961 aaggcacgcctgtacggctgcatacgcacgttgaaaagccaaca 19004 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaaccgagtcctagtagtattaggattcctagtcctagtctatct 66 |||||||| ||||| ||||||||||||| || ||||| ||| |||||||||| ||||| | Sbjct: 18751 ttaggaaacaaagcaaaaccgagtcctactaatattatgatacctagtcctactctattt 18810 Query: 67 ccatagtcccttgt 80 ||||||||| |||| Sbjct: 18811 ccatagtcctttgt 18824
>dbj|AK106219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H06, full insert sequence Length = 1626 Score = 268 bits (135), Expect = 2e-68 Identities = 264/307 (85%) Strand = Plus / Minus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 1320 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 1261 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 1260 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 1201 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctg 483 | || || || ||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1200 acaggagtattccccagaatgtgctcacaagtggcaatgcctggacagcatcagcagcag 1141 Query: 484 cataaccagcagcctgaccacccatgaattggaagccattgccgaaaccgcaaaggaagc 543 |||| ||||||||||||||||||||||| || || |||||||| || || || ||||||| Sbjct: 1140 catagccagcagcctgaccacccatgaactgaaacccattgccaaagccacataggaagc 1081 Query: 544 cagcaagaagagcccattgcctgccttcccagtcattcagataggccttgaaggatgact 603 |||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| | Sbjct: 1080 cagccaggagagcccactgcctgccttcccagtcattcaggtaagccttgaaggatgatt 1021 Query: 604 tgggcac 610 | ||||| Sbjct: 1020 tcggcac 1014
>dbj|AK073792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068M22, full insert sequence Length = 1745 Score = 268 bits (135), Expect = 2e-68 Identities = 264/307 (85%) Strand = Plus / Minus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 1321 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 1262 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 1261 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 1202 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctg 483 | || || || ||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1201 acaggagtattccccagaatgtgctcacaagtggcaatgcctggacagcatcagcagcag 1142 Query: 484 cataaccagcagcctgaccacccatgaattggaagccattgccgaaaccgcaaaggaagc 543 |||| ||||||||||||||||||||||| || || |||||||| || || || ||||||| Sbjct: 1141 catagccagcagcctgaccacccatgaactgaaacccattgccaaagccacataggaagc 1082 Query: 544 cagcaagaagagcccattgcctgccttcccagtcattcagataggccttgaaggatgact 603 |||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| | Sbjct: 1081 cagccaggagagcccactgcctgccttcccagtcattcaggtaagccttgaaggatgatt 1022 Query: 604 tgggcac 610 | ||||| Sbjct: 1021 tcggcac 1015
>dbj|AK072750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134K21, full insert sequence Length = 2066 Score = 268 bits (135), Expect = 2e-68 Identities = 264/307 (85%) Strand = Plus / Minus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 1697 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 1638 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 1637 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 1578 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctg 483 | || || || ||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1577 acaggagtattccccagaatgtgctcacaagtggcaatgcctggacagcatcagcagcag 1518 Query: 484 cataaccagcagcctgaccacccatgaattggaagccattgccgaaaccgcaaaggaagc 543 |||| ||||||||||||||||||||||| || || |||||||| || || || ||||||| Sbjct: 1517 catagccagcagcctgaccacccatgaactgaaacccattgccaaagccacataggaagc 1458 Query: 544 cagcaagaagagcccattgcctgccttcccagtcattcagataggccttgaaggatgact 603 |||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| | Sbjct: 1457 cagccaggagagcccactgcctgccttcccagtcattcaggtaagccttgaaggatgatt 1398 Query: 604 tgggcac 610 | ||||| Sbjct: 1397 tcggcac 1391
>dbj|AK058620.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B07, full insert sequence Length = 1587 Score = 268 bits (135), Expect = 2e-68 Identities = 264/307 (85%) Strand = Plus / Minus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 1279 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 1220 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 1219 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 1160 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctg 483 | || || || ||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1159 acaggagtattccccagaatgtgctcacaagtggcaatgcctggacagcatcagcagcag 1100 Query: 484 cataaccagcagcctgaccacccatgaattggaagccattgccgaaaccgcaaaggaagc 543 |||| ||||||||||||||||||||||| || || |||||||| || || || ||||||| Sbjct: 1099 catagccagcagcctgaccacccatgaactgaaacccattgccaaagccacataggaagc 1040 Query: 544 cagcaagaagagcccattgcctgccttcccagtcattcagataggccttgaaggatgact 603 |||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| | Sbjct: 1039 cagccaggagagcccactgcctgccttcccagtcattcaggtaagccttgaaggatgatt 980 Query: 604 tgggcac 610 | ||||| Sbjct: 979 tcggcac 973
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||| ||||| ||||||||||||||||||||||| || || |||| Sbjct: 19203484 cctggacagcatcagcagcagcatagccagcagcctgaccacccatgaactgaaacccat 19203543 Query: 523 tgccgaaaccgcaaaggaagccagcaagaagagcccattgcctgccttcccagtcattca 582 |||| || || || ||||||||||| || |||||||| |||||||||||||||||||||| Sbjct: 19203544 tgccaaagccacataggaagccagccaggagagcccactgcctgccttcccagtcattca 19203603 Query: 583 gataggccttgaaggatgacttgggcac 610 | || |||||||||||||| || ||||| Sbjct: 19203604 ggtaagccttgaaggatgatttcggcac 19203631 Score = 119 bits (60), Expect = 1e-23 Identities = 138/164 (84%) Strand = Plus / Plus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 19203027 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 19203086 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 19203087 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 19203146 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctga 467 | || || || ||||| ||||||||||||||||||||||||||| Sbjct: 19203147 acaggagtattccccagaatgtgctcacaagtggcaatgcctga 19203190 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 19245298 cctggacagcatcagcagctgcatatccagcagcctgcccacccatgaactggaacccat 19245357 Query: 523 tgcc 526 |||| Sbjct: 19245358 tgcc 19245361 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct: 19223004 cctggacagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcat 19223063 Query: 523 tgcc 526 |||| Sbjct: 19223064 tgcc 19223067
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||| ||||| ||||||||||||||||||||||| || || |||| Sbjct: 19129711 cctggacagcatcagcagcagcatagccagcagcctgaccacccatgaactgaaacccat 19129770 Query: 523 tgccgaaaccgcaaaggaagccagcaagaagagcccattgcctgccttcccagtcattca 582 |||| || || || ||||||||||| || |||||||| |||||||||||||||||||||| Sbjct: 19129771 tgccaaagccacataggaagccagccaggagagcccactgcctgccttcccagtcattca 19129830 Query: 583 gataggccttgaaggatgacttgggcac 610 | || |||||||||||||| || ||||| Sbjct: 19129831 ggtaagccttgaaggatgatttcggcac 19129858 Score = 119 bits (60), Expect = 1e-23 Identities = 138/164 (84%) Strand = Plus / Plus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 19129254 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 19129313 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 19129314 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 19129373 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctga 467 | || || || ||||| ||||||||||||||||||||||||||| Sbjct: 19129374 acaggagtattccccagaatgtgctcacaagtggcaatgcctga 19129417 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 19171525 cctggacagcatcagcagctgcatatccagcagcctgcccacccatgaactggaacccat 19171584 Query: 523 tgcc 526 |||| Sbjct: 19171585 tgcc 19171588 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct: 19149231 cctggacagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcat 19149290 Query: 523 tgcc 526 |||| Sbjct: 19149291 tgcc 19149294
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Minus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||| ||||| ||||||||||||||||||||||| || || |||| Sbjct: 22497 cctggacagcatcagcagcagcatagccagcagcctgaccacccatgaactgaaacccat 22438 Query: 523 tgccgaaaccgcaaaggaagccagcaagaagagcccattgcctgccttcccagtcattca 582 |||| || || || ||||||||||| || |||||||| |||||||||||||||||||||| Sbjct: 22437 tgccaaagccacataggaagccagccaggagagcccactgcctgccttcccagtcattca 22378 Query: 583 gataggccttgaaggatgacttgggcac 610 | || |||||||||||||| || ||||| Sbjct: 22377 ggtaagccttgaaggatgatttcggcac 22350 Score = 119 bits (60), Expect = 1e-23 Identities = 138/164 (84%) Strand = Plus / Minus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 22954 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 22895 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 22894 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 22835 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctga 467 | || || || ||||| ||||||||||||||||||||||||||| Sbjct: 22834 acaggagtattccccagaatgtgctcacaagtggcaatgcctga 22791 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct: 2941 cctggacagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcat 2882 Query: 523 tgcc 526 |||| Sbjct: 2881 tgcc 2878
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||| ||||| ||||||||||||||||||||||| || || |||| Sbjct: 36814 cctggacagcatcagcagcagcatagccagcagcctgaccacccatgaactgaaacccat 36873 Query: 523 tgccgaaaccgcaaaggaagccagcaagaagagcccattgcctgccttcccagtcattca 582 |||| || || || ||||||||||| || |||||||| |||||||||||||||||||||| Sbjct: 36874 tgccaaagccacataggaagccagccaggagagcccactgcctgccttcccagtcattca 36933 Query: 583 gataggccttgaaggatgacttgggcac 610 | || |||||||||||||| || ||||| Sbjct: 36934 ggtaagccttgaaggatgatttcggcac 36961 Score = 119 bits (60), Expect = 1e-23 Identities = 138/164 (84%) Strand = Plus / Plus Query: 304 atcactttgtgctcctgtgacctgctgaagccatgagtgttgctacagcggcgataaaca 363 ||||||| |||||||||||||||| |||||||||||| || || ||| |||| |||| Sbjct: 36357 atcacttggtgctcctgtgacctgatgaagccatgagcaccgcgaccgcgacgatgaaca 36416 Query: 364 tgagcagcatgaacacgagcagagtatacgttttcttcgatgacttccggtactccccga 423 ||| |||||||||| ||||||| ||||||| || ||| || |||||||||||||| | Sbjct: 36417 tgaacagcatgaacccgagcaggatatacgtctttcgcgacgatttccggtactccccaa 36476 Query: 424 atagcaggataccccaaaatgtgctcacaagtggcaatgcctga 467 | || || || ||||| ||||||||||||||||||||||||||| Sbjct: 36477 acaggagtattccccagaatgtgctcacaagtggcaatgcctga 36520 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 78628 cctggacagcatcagcagctgcatatccagcagcctgcccacccatgaactggaacccat 78687 Query: 523 tgcc 526 |||| Sbjct: 78688 tgcc 78691 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct: 56334 cctggacagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcat 56393 Query: 523 tgcc 526 |||| Sbjct: 56394 tgcc 56397
>dbj|AK105377.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F01, full insert sequence Length = 1688 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccat 522 |||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 941 cctggacagcatcagcagctgcatatccagcagcctgcccacccatgaactggaacccat 1000 Query: 523 tgcc 526 |||| Sbjct: 1001 tgcc 1004
>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full insert sequence Length = 1826 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 409 tccggtactccccgaatagcaggataccccaaaatgtgctcacaagtggcaatgcctgaa 468 |||||||||| ||||| |||| ||| ||||| | |||||||| || ||||| ||||| | Sbjct: 1376 tccggtactcgccgaacagcacgatcccccacaccgtgctcaccagcggcaacgcctgga 1317 Query: 469 cagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattgcc 526 |||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 1316 cagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcattgcc 1259
>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full insert sequence Length = 2721 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 409 tccggtactccccgaatagcaggataccccaaaatgtgctcacaagtggcaatgcctgaa 468 |||||||||| ||||| |||| ||| ||||| | |||||||| || ||||| ||||| | Sbjct: 2271 tccggtactcgccgaacagcacgatcccccacaccgtgctcaccagcggcaacgcctgga 2212 Query: 469 cagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattgcc 526 |||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 2211 cagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcattgcc 2154
>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full insert sequence Length = 2118 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 409 tccggtactccccgaatagcaggataccccaaaatgtgctcacaagtggcaatgcctgaa 468 |||||||||| ||||| |||| ||| ||||| | |||||||| || ||||| ||||| | Sbjct: 1388 tccggtactcgccgaacagcacgatcccccacaccgtgctcaccagcggcaacgcctgga 1329 Query: 469 cagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattgcc 526 |||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 1328 cagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcattgcc 1271
>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full insert sequence Length = 1828 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 409 tccggtactccccgaatagcaggataccccaaaatgtgctcacaagtggcaatgcctgaa 468 |||||||||| ||||| |||| ||| ||||| | |||||||| || ||||| ||||| | Sbjct: 1376 tccggtactcgccgaacagcacgatcccccacaccgtgctcaccagcggcaacgcctgga 1317 Query: 469 cagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattgcc 526 |||| |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 1316 cagcgtcagcagcagcatacccagcagcctgcccagccatgaactggaacgcattgcc 1259
>ref|NM_126409.2| Arabidopsis thaliana ATUPS1; allantoin transporter AT2G03590 (ATUPS1) mRNA, complete cds Length = 1752 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 435 ccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataaccagca 494 ||||||||||| ||||||||||| | |||||||||||| || ||||||||||| || || Sbjct: 1421 ccccaaaatgtactcacaagtggaagtgcctgaacagcgtctgcagctgcatagcctgcg 1362 Query: 495 gcctgaccacccatgaa 511 || |||||||||||||| Sbjct: 1361 gcttgaccacccatgaa 1345
>emb|BX819696.1|CNS0A8HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZE10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1514 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 435 ccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataaccagca 494 ||||||||||| ||||||||||| | |||||||||||| || ||||||||||| || || Sbjct: 1209 ccccaaaatgtactcacaagtggaagtgcctgaacagcgtctgcagctgcatagcctgcg 1150 Query: 495 gcctgaccacccatgaa 511 || |||||||||||||| Sbjct: 1149 gcttgaccacccatgaa 1133
>gb|AY085962.1| Arabidopsis thaliana clone 2021 mRNA, complete sequence Length = 1579 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 435 ccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataaccagca 494 ||||||||||| ||||||||||| | |||||||||||| || ||||||||||| || || Sbjct: 1248 ccccaaaatgtactcacaagtggaagtgcctgaacagcgtctgcagctgcatagcctgcg 1189 Query: 495 gcctgaccacccatgaa 511 || |||||||||||||| Sbjct: 1188 gcttgaccacccatgaa 1172
>gb|AY461734.1| Phaseolus vulgaris allantoin permease mRNA, complete cds Length = 1224 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 434 accccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataaccagc 493 |||||| || ||||| |||||||| | ||||||||||||||| || |||||||| || || Sbjct: 1080 accccagaaagtgcttacaagtggaagtgcctgaacagcatctgctgctgcatatcctgc 1021 Query: 494 agcctgaccacccatgaattgga 516 ||| ||||| ||||| ||||||| Sbjct: 1020 agcttgaccccccataaattgga 998
>gb|AY110462.1| Zea mays CL7112_1 mRNA sequence Length = 752 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 405 gacttccggtactccccgaatagcaggataccccaaaatgtgctcacaagtggcaatgcc 464 ||||| |||||||||||||| ||||| | ||||| || ||||| || || |||| ||| Sbjct: 703 gacttgcggtactccccgaagagcagtacgccccagaaggtgctgacgagcggcagggcc 644 Query: 465 tgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattg 524 || ||||| ||||| || || || || || ||||| || |||||||| |||||||| ||| Sbjct: 643 tggacagcgtcagcggcggcgtaccctgctgcctggccgcccatgaactggaagccgttg 584 Query: 525 ccgaaaccgca 535 ||||| ||||| Sbjct: 583 ccgaagccgca 573
>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120, complete sequence Length = 137804 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 465 tgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattg 524 ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct: 109577 tgaacagcatctgctgctgcatatcctgcagcttgacctcccataaattgaaggccattt 109518 Query: 525 ccgaaaccgcaaaggaagccagcaagaagagccca 559 || || || ||||||| ||||| | ||||||||| Sbjct: 109517 ccaaacccacaaaggagaccagccaaaagagccca 109483 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 465 tgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccattg 524 ||||||||||| || || ||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct: 101864 tgaacagcatctgctgcagcatatcctgcagcttgacctcccataaattgaaggccattc 101805 Query: 525 ccgaaaccgcaaaggaagccagcaagaagagccca 559 ||||| || ||||||| ||||| | ||||||||| Sbjct: 101804 ccgaacccacaaaggagaccagccaaaagagccca 101770 Score = 44.1 bits (22), Expect = 0.54 Identities = 58/70 (82%) Strand = Plus / Minus Query: 397 tcttcgatgacttccggtactccccgaatagcaggataccccaaaatgtgctcacaagtg 456 |||| ||||| || |||||||| || |||| | || ||||||||||||||| ||||||| Sbjct: 102276 tctttgatgatttgcggtactctccaaataaaacgacaccccaaaatgtgcttacaagtg 102217 Query: 457 gcaatgcctg 466 | | |||||| Sbjct: 102216 gtagtgcctg 102207
>emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE Length = 131869 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccat 508 |||| ||||||||||| |||||||| |||||||| ||||| ||||| Sbjct: 65361 cctggacagcatcagctgctgcatatccagcagcttgacctcccat 65316 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 465 tgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccatt 523 ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct: 58138 tgaacagcatctgctgctgcatatcctgcagcttgacctcccataaattgaaggccatt 58196 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 435 ccccaaaatgtgctcacaagtggcaatgcctg 466 |||||||| |||||||||||||| | |||||| Sbjct: 65554 ccccaaaaagtgctcacaagtggaagtgcctg 65523
>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete sequence Length = 87543 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 |||||||||| || ||||||||||| || || || |||||||||||||| Sbjct: 17625 cctgaacagcgtctgcagctgcatagcctgcggcttgaccacccatgaa 17577 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 435 ccccaaaatgtgctcacaagtggcaatgcctgaa 468 ||||||||||| ||||||||||| | |||||||| Sbjct: 17734 ccccaaaatgtactcacaagtggaagtgcctgaa 17701
>ref|NM_126402.1| Arabidopsis thaliana ATUPS4 AT2G03520 (ATUPS4) mRNA, complete cds Length = 1167 Score = 48.1 bits (24), Expect = 0.034 Identities = 66/80 (82%) Strand = Plus / Minus Query: 432 ataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataacca 491 ||||||||||||||||| ||||| || | |||||| |||| || ||||| || || ||| Sbjct: 1046 ataccccaaaatgtgcttacaagaggaagtgcctggacagagtctgcagccgcgtatcca 987 Query: 492 gcagcctgaccacccatgaa 511 || || ||||| |||||||| Sbjct: 986 gcggcttgacctcccatgaa 967
>gb|AY600550.1| Arabidopsis thaliana hypothetical protein (At2g03520) mRNA, complete cds, alternatively spliced Length = 1407 Score = 48.1 bits (24), Expect = 0.034 Identities = 66/80 (82%) Strand = Plus / Minus Query: 432 ataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataacca 491 ||||||||||||||||| ||||| || | |||||| |||| || ||||| || || ||| Sbjct: 1187 ataccccaaaatgtgcttacaagaggaagtgcctggacagagtctgcagccgcgtatcca 1128 Query: 492 gcagcctgaccacccatgaa 511 || || ||||| |||||||| Sbjct: 1127 gcggcttgacctcccatgaa 1108
>gb|AY600549.1| Arabidopsis thaliana hypothetical protein (At2g03520) mRNA, complete cds, alternatively spliced Length = 1500 Score = 48.1 bits (24), Expect = 0.034 Identities = 66/80 (82%) Strand = Plus / Minus Query: 432 ataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataacca 491 ||||||||||||||||| ||||| || | |||||| |||| || ||||| || || ||| Sbjct: 1280 ataccccaaaatgtgcttacaagaggaagtgcctggacagagtctgcagccgcgtatcca 1221 Query: 492 gcagcctgaccacccatgaa 511 || || ||||| |||||||| Sbjct: 1220 gcggcttgacctcccatgaa 1201
>gb|AY600548.1| Arabidopsis thaliana hypothetical protein (At2g03520) mRNA, complete cds, alternatively spliced Length = 1568 Score = 48.1 bits (24), Expect = 0.034 Identities = 66/80 (82%) Strand = Plus / Minus Query: 432 ataccccaaaatgtgctcacaagtggcaatgcctgaacagcatcagcagctgcataacca 491 ||||||||||||||||| ||||| || | |||||| |||| || ||||| || || ||| Sbjct: 1348 ataccccaaaatgtgcttacaagaggaagtgcctggacagagtctgcagccgcgtatcca 1289 Query: 492 gcagcctgaccacccatgaa 511 || || ||||| |||||||| Sbjct: 1288 gcggcttgacctcccatgaa 1269
>ref|NM_179377.1| Arabidopsis thaliana ATUPS5 AT1G26440 (ATUPS5) transcript variant AT1G26440.2 mRNA, complete cds Length = 1698 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1394 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1344
>ref|NM_202186.1| Arabidopsis thaliana ATUPS5 AT1G26440 (ATUPS5) transcript variant AT1G26440.3 mRNA, complete cds Length = 1437 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1133 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1083
>ref|NM_001036017.1| Arabidopsis thaliana ATUPS5 AT1G26440 (ATUPS5) transcript variant AT1G26440.4 mRNA, complete cds Length = 1286 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 982 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 932
>ref|NM_102407.2| Arabidopsis thaliana ATUPS5 AT1G26440 (ATUPS5) transcript variant AT1G26440.1 mRNA, complete cds Length = 1365 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1061 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1011
>gb|AY058066.1| Arabidopsis thaliana At1g26440/T1K7_17 mRNA, complete cds Length = 1700 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1396 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1346
>gb|AY087003.1| Arabidopsis thaliana clone 30412 mRNA, complete sequence Length = 1357 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1061 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1011
>gb|BT003016.1| Arabidopsis thaliana At1g26440/T1K7_17 gene, complete cds Length = 1242 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 461 tgcctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 1080 tgcctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 1030
>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE Length = 130069 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 465 tgaacagcatcagcagctgcataaccagcagcctgaccacccatgaattggaagccatt 523 ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct: 124101 tgaacagcatctgctgctgcatatcctgcagcttgacctcccataaattgaaggccatt 124043
>emb|AL139412.10| Human DNA sequence from clone RP11-98G7 on chromosome 1q21.2-22 Contains a novel gene and the 3' end of the MEF2D gene for MADS box transcription enhancer factor 2 polypeptide D (myocyte enhancer factor 2D), complete sequence Length = 51420 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 agatcactttgtgctcctgtga 323 |||||||||||||||||||||| Sbjct: 16245 agatcactttgtgctcctgtga 16224
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 gcaaaggaagccagcaagaaga 554 |||||||||||||||||||||| Sbjct: 3337761 gcaaaggaagccagcaagaaga 3337740
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 gcaaaggaagccagcaagaaga 554 |||||||||||||||||||||| Sbjct: 3332767 gcaaaggaagccagcaagaaga 3332746
>gb|DQ398933.1| Petromyzon marinus neurofilament subunit NF-132 mRNA, complete cds Length = 2518 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 468 acagcatcagcagctgcataaccagcagc 496 |||||||||||||| |||| ||||||||| Sbjct: 48 acagcatcagcagcagcatcaccagcagc 76
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 acgttttcttcgatgacttcc 411 ||||||||||||||||||||| Sbjct: 513095 acgttttcttcgatgacttcc 513115
>ref|NM_174012.2| Bos taurus antigen CD3Z, zeta polypeptide (CD3Z), mRNA Length = 1736 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 586 aggccttgaaggatgacttgg 606 ||||||||||||||||||||| Sbjct: 1521 aggccttgaaggatgacttgg 1541
>gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, complete sequence Length = 184285 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 caaaagccaacagaaacagat 305 ||||||||||||||||||||| Sbjct: 179753 caaaagccaacagaaacagat 179773
>gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence Length = 89473 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 463 cctgaacagcatcagcagctgcataaccagcagcctgaccacccatgaa 511 ||||||||||||| | |||||||| || ||||| || ||||||||||| Sbjct: 56082 cctgaacagcatctgaggctgcatatcctgcagcttgtccacccatgaa 56034
>ref|NM_210946.1| Eremothecium gossypii AFR045Wp (AFR045W), mRNA Length = 1305 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 acgttttcttcgatgacttcc 411 ||||||||||||||||||||| Sbjct: 356 acgttttcttcgatgacttcc 376
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 ttgccgaaaccgcaaaggaag 542 ||||||||||||||||||||| Sbjct: 2233249 ttgccgaaaccgcaaaggaag 2233229
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 acaccctaggggtgttgattg 116 ||||||||||||||||||||| Sbjct: 18272 acaccctaggggtgttgattg 18292
>gb|U25688.1|BTU25688 Bos taurus T-cell receptor zeta chain mRNA, complete cds Length = 1736 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 586 aggccttgaaggatgacttgg 606 ||||||||||||||||||||| Sbjct: 1521 aggccttgaaggatgacttgg 1541
>gb|U25997.1|HSU25997 Homo sapiens stanniocalcin precursor (STC) mRNA, complete cds Length = 3901 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ccagaaaaacgaaaagcaatacaa 145 ||||||||| |||||||||||||| Sbjct: 2829 ccagaaaaatgaaaagcaatacaa 2852
>ref|NM_003155.2| Homo sapiens stanniocalcin 1 (STC1), mRNA Length = 3897 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ccagaaaaacgaaaagcaatacaa 145 ||||||||| |||||||||||||| Sbjct: 2828 ccagaaaaatgaaaagcaatacaa 2851
>gb|AC159545.18| Mus musculus 6 BAC RP23-244E8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 172372 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tccatcgatcagttttattc 199 |||||||||||||||||||| Sbjct: 59424 tccatcgatcagttttattc 59443
>gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosome 7, complete sequence Length = 174164 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 acagcatcagcagctgcataacca 491 ||||||||||||||||||| |||| Sbjct: 15072 acagcatcagcagctgcatcacca 15049
>gb|AC005039.1| Homo sapiens BAC clone RP11-512E16 from 7, complete sequence Length = 151316 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gaaaagcaatacaaagcaaa 151 |||||||||||||||||||| Sbjct: 77770 gaaaagcaatacaaagcaaa 77751
>emb|CT009708.6| Mouse DNA sequence from clone RP23-82F10 on chromosome 9, complete sequence Length = 247670 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 469 cagcatcagcagctgcataaccagcagc 496 ||||||||||||| |||| ||||||||| Sbjct: 88389 cagcatcagcagcagcatcaccagcagc 88362
>gb|AC142315.1| Pan troglodytes BAC clone RP43-48P12 from 7, complete sequence Length = 178928 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gaaaagcaatacaaagcaaa 151 |||||||||||||||||||| Sbjct: 104670 gaaaagcaatacaaagcaaa 104651
>gb|AC124965.18| Medicago truncatula clone mth2-7h21, complete sequence Length = 122160 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 catcagcagctgcataacca 491 |||||||||||||||||||| Sbjct: 42393 catcagcagctgcataacca 42374
>emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chromosome X, complete sequence Length = 129422 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 aaaccgcaaaggaagccagcaaga 551 ||||||||||||||| |||||||| Sbjct: 21709 aaaccgcaaaggaagacagcaaga 21686
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gacaccctaggggtgttgat 114 |||||||||||||||||||| Sbjct: 3211864 gacaccctaggggtgttgat 3211883
>gb|AF542236.1| Homo sapiens cyclin K (CCNK) gene, complete cds Length = 33634 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttaggaaagaaagccaaacc 26 |||||||||||||||||||| Sbjct: 28121 ttaggaaagaaagccaaacc 28140
>emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 11/11 Length = 307337 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 acgttttcttcgatgacttc 410 |||||||||||||||||||| Sbjct: 303600 acgttttcttcgatgacttc 303619
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 taccagaaaaacgaaaagcaatac 143 ||||||||||||||||| |||||| Sbjct: 1431319 taccagaaaaacgaaaaccaatac 1431342
>gb|AF165145.4| Homo sapiens chromosome 8 clone GS1-194o16 map 8p23, complete sequence Length = 131299 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 123 cagaaaaacgaaaagcaatacaaagcaaaggc 154 ||||||| ||||||||| ||||||||||||| Sbjct: 32141 cagaaaagagaaaagcaaaacaaagcaaaggc 32110
>gb|AC175194.2| Sporobolomyces roseus clone JGIBAIF-13P11, complete sequence Length = 39847 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tttcttcgatgacttccggt 414 |||||||||||||||||||| Sbjct: 8069 tttcttcgatgacttccggt 8088
>gb|AE012146.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 54 of 460 of the complete genome Length = 12022 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtgctcacaagtggcaatgc 463 |||||||||||||||||||| Sbjct: 3727 gtgctcacaagtggcaatgc 3708
>gb|AF242179.1| Homo sapiens stanniocalcin 1 (STC1) gene, exons 1 through 4 and complete cds Length = 18216 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ccagaaaaacgaaaagcaatacaa 145 ||||||||| |||||||||||||| Sbjct: 13844 ccagaaaaatgaaaagcaatacaa 13867
>gb|AY228381.1| Phalanger orientalis 16S ribosomal RNA gene, complete sequence; mitochondrial gene for mitochondrial product Length = 1576 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aaaagcaatacaaagcaaag 152 |||||||||||||||||||| Sbjct: 146 aaaagcaatacaaagcaaag 165
>gb|DQ383260.1| Bartonella henselae genotype 4 alr-gcvP intergenic spacer, partial sequence Length = 327 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 taccagaaaaacgaaaagcaatac 143 ||||||||||||||||| |||||| Sbjct: 210 taccagaaaaacgaaaaccaatac 233
>gb|DQ383259.1| Bartonella henselae genotype 3 alr-gcvP intergenic spacer, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 taccagaaaaacgaaaagcaatac 143 ||||||||||||||||| |||||| Sbjct: 210 taccagaaaaacgaaaaccaatac 233
>gb|DQ383258.1| Bartonella henselae genotype 2 alr-gcvP intergenic spacer, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 taccagaaaaacgaaaagcaatac 143 ||||||||||||||||| |||||| Sbjct: 210 taccagaaaaacgaaaaccaatac 233
>gb|DQ383257.1| Bartonella henselae genotype 1 alr-gcvP intergenic spacer, partial sequence Length = 327 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 taccagaaaaacgaaaagcaatac 143 ||||||||||||||||| |||||| Sbjct: 210 taccagaaaaacgaaaaccaatac 233
>gb|AC153625.2| Mus musculus 6 BAC RP23-277O13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175711 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 agacaccctaggggtgttga 113 |||||||||||||||||||| Sbjct: 174745 agacaccctaggggtgttga 174764
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtgctcacaagtggcaatgc 463 |||||||||||||||||||| Sbjct: 591583 gtgctcacaagtggcaatgc 591564
>gb|AC159912.9| Mus musculus 6 BAC RP24-314B1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 178951 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 agacaccctaggggtgttga 113 |||||||||||||||||||| Sbjct: 32141 agacaccctaggggtgttga 32160
>gb|AC012119.8| Homo sapiens chromosome 8, clone RP11-175E9, complete sequence Length = 154898 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ccagaaaaacgaaaagcaatacaa 145 ||||||||| |||||||||||||| Sbjct: 56282 ccagaaaaatgaaaagcaatacaa 56305
>gb|AC124069.7| Homo sapiens chromosome 8, clone RP11-326L2, complete sequence Length = 174025 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 123 cagaaaaacgaaaagcaatacaaagcaaaggc 154 ||||||| ||||||||| ||||||||||||| Sbjct: 64443 cagaaaagagaaaagcaaaacaaagcaaaggc 64474
>emb|AL110504.6|CNS01DRB Human chromosome 14 DNA sequence BAC R-688G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 207117 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttaggaaagaaagccaaacc 26 |||||||||||||||||||| Sbjct: 143154 ttaggaaagaaagccaaacc 143135
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 caccctaggggtgttgattg 116 |||||||||||||||||||| Sbjct: 20969 caccctaggggtgttgattg 20988
>dbj|AP006249.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-383B10, complete sequence Length = 195290 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 123 cagaaaaacgaaaagcaatacaaagcaaaggc 154 ||||||| ||||||||| ||||||||||||| Sbjct: 30476 cagaaaagagaaaagcaaaacaaagcaaaggc 30507
>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete sequence Length = 206918 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 aaaatgtgctcacaagtggcaatg 462 ||||||||||| |||||||||||| Sbjct: 169439 aaaatgtgctctcaagtggcaatg 169462
>gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.680_C_21, complete sequence Length = 197915 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 cagcagctgcataaccagca 494 |||||||||||||||||||| Sbjct: 41220 cagcagctgcataaccagca 41201
>emb|CT030211.4| M.truncatula DNA sequence from clone MTH2-85A3 on chromosome 3, complete sequence Length = 78707 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 catcagcagctgcataacca 491 |||||||||||||||||||| Sbjct: 26338 catcagcagctgcataacca 26357
>gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196902 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tccatcgatcagttttattc 199 |||||||||||||||||||| Sbjct: 61673 tccatcgatcagttttattc 61654
>dbj|AB020864.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 7/11 Length = 100000 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 123 cagaaaaacgaaaagcaatacaaagcaaaggc 154 ||||||| ||||||||| ||||||||||||| Sbjct: 31381 cagaaaagagaaaagcaaaacaaagcaaaggc 31412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,738,774 Number of Sequences: 3902068 Number of extensions: 4738774 Number of successful extensions: 89460 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89141 Number of HSP's gapped (non-prelim): 307 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
