ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full ... 904 0.0
2ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predic... 438 e-119
3dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 438 e-119
4gb|AY103958.1| Zea mays PCO141591 mRNA sequence 430 e-117
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
6dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
7dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
8gb|AY943856.1| Nicotiana benthamiana non-intrinsic ABC protein m... 68 4e-08
9gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 56 2e-04
10gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 50 0.009
11dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 50 0.009
12gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 48 0.037
13gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 48 0.037
14gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 46 0.14
15gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome... 44 0.57
16gb|AF329697.1| Xanthomonas oryzae pv. oryzae insertion sequence ... 44 0.57
17dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 44 0.57
18gb|AE012389.1| Xanthomonas campestris pv. campestris str. ATCC 3... 44 0.57
19gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 44 0.57
20gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 44 0.57
21ref|NM_116715.3| Arabidopsis thaliana ATABC1 AT4G04770 (ATABC1) ... 42 2.3
22gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 42 2.3
23emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, ... 42 2.3
24gb|AY142069.1| Arabidopsis thaliana At4g04770/T4B21_16 mRNA, com... 42 2.3
25emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686... 42 2.3
26gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, comp... 42 2.3
27gb|AY056410.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, com... 42 2.3
28gb|AY052195.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, com... 42 2.3
29gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 2.3
30tpg|BK001497.1| TPA: TPA_exp: Arabidopsis thaliana putative ABC ... 42 2.3
31emb|BX827948.1|CNS0A3VL Arabidopsis thaliana Full-length cDNA Co... 42 2.3
32emb|BX827675.1|CNS0A3OT Arabidopsis thaliana Full-length cDNA Co... 42 2.3
33gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 42 2.3
34dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 2.3
35gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 42 2.3
36gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.9
37gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 8.9
38gb|BC070011.1| Danio rerio zgc:73404, mRNA (cDNA clone MGC:85750... 40 8.9
39gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete seq... 40 8.9
40gb|AC145516.4| Mus musculus BAC clone RP24-157K17 from chromosom... 40 8.9
41gb|AC123928.3| Mus musculus BAC clone RP24-390L8 from chromosome... 40 8.9
42gb|AC145607.3| Mus musculus BAC clone RP24-270N6 from chromosome... 40 8.9
43gb|AC144627.2| Mus musculus BAC clone RP24-164A21 from chromosom... 40 8.9
44gb|AC145563.2| Mus musculus BAC clone RP24-75L3 from chromosome ... 40 8.9
45gb|AC145566.4| Mus musculus BAC clone RP24-79A15 from chromosome... 40 8.9
46gb|AC144857.3| Mus musculus BAC clone RP24-168C21 from chromosom... 40 8.9
47gb|AC132295.4| Mus musculus BAC clone RP24-325L5 from chromosome... 40 8.9
48emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in... 40 8.9
49gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosom... 40 8.9
50gb|DQ277922.1| Mus musculus clone Bgal-Synd+.08b immunoglobulin ... 40 8.9
51gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.9
52emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J... 40 8.9
53gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 8.9
54gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 8.9
55gb|AC175526.4| Mus musculus BAC clone RP24-84E22 from chromosome... 40 8.9
56gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.9
57gb|AC175668.3| Mus musculus BAC clone RP24-319G11 from chromosom... 40 8.9
58gb|AC134557.4| Mus musculus chromosome UNK clone RP24-323H18, co... 40 8.9
59gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's H... 40 8.9
60gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 8.9
61emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, c... 40 8.9 
>gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full insert mRNA sequence
          Length = 1919

 Score =  904 bits (456), Expect = 0.0
 Identities = 565/599 (94%), Gaps = 3/599 (0%)
 Strand = Plus / Minus

                                                                        
Query: 53   ttatacaagccatgaaacgtccatttatcatgtaatttattcttctcagtctcatactgc 112
            |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 1828 ttatacaagccatgaaacgtccttttatcatgtaacttattcttctcagtctcatactgc 1769

                                                                        
Query: 113  tgctgtacacatggtcacatggacttcct-agatgaccatcgtatggtatttcagataat 171
            |||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1768 tgctgtaca--tggtcacatggacttccttagataaccatcgtatggtatttcagataat 1711

                                                                        
Query: 172  tatcggatgatatttcacatacttgttgaaccaagaacttagccaactgatccctccagc 231
            |||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1710 tatcgggtgatatttcgcagacttgttgaaccaataacttagccaactgatccctccagc 1651

                                                                        
Query: 232  ttcaggttcataagtgcatccacctcctgggcaaactcgtaaggaaggtgttcaaagacg 291
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 ttcaggttcattagtgcatccacctcctgggcaaactcgtaaggaaggtgttcaaagacg 1591

                                                                        
Query: 292  gccctacagaatccaccgatcatggctgcaacggccttttcatgatctatccccctttgc 351
            || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1590 gctctacagaacccacctatcatggctgcaacggccttttcatgatcaatccctctttgc 1531

                                                                        
Query: 352  tgaaagtaaaacagctggtcctctccaattttggatgtgcttgcttcatgctcaacacgg 411
            |||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1530 tgaaagtagaatagctgatcctcgccaattttggatgtgcttgcctcatgctcaacacgg 1471

                                                                        
Query: 412  ccactagtacaacccacctgaatggtgggataggtgttagcagcagccttgtccccaatc 471
            |||||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 1470 ccactagtgcaacccacctgaatggtcggataggtgttggcggcagcgttgtccccaatc 1411

                                                                        
Query: 472  agcaatgaatcacactgagaagagttatacgcattctctgcacctgaattcatctggacc 531
            ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1410 agcaatgaatcacactgcgaagaattataagcattctctgcacctgaattcatctggacc 1351

                                                                        
Query: 532  agcccacggtagcaattccttgacttccccgctgagatacccttggatataatccggctg 591
            |||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||
Sbjct: 1350 agcccacggtagcaattccttgactttcctgccgagatacctttggatataatccggctg 1291

                                                                       
Query: 592  cgtgaattcttccccttgtggatcatctttgtccctgtatcggcctgctggtaatcctt 650
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 cgtgaattcttccccttatggatcatctttgtccctgtatcggcctgctggtaatcctt 1232



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 11   aagcgccacggttctcttcgctgtcg 36
            ||||||| ||||||||||||||||||
Sbjct: 1861 aagcgccgcggttctcttcgctgtcg 1836
to top
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score =  438 bits (221), Expect = e-119
 Identities = 383/437 (87%)
 Strand = Plus / Minus

                                                                        
Query: 214  ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 273
            |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 1631 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1572

                                                                        
Query: 274  ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 333
            ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 1571 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1512

                                                                        
Query: 334  tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 393
            || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 1511 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1452

                                                                        
Query: 394  gcttcatgctcaacacggccactagtacaacccacctgaatggtgggataggtgttagca 453
            || |||||||||||||| | |  | | |||||||||||||| || ||||||||||| |||
Sbjct: 1451 gcctcatgctcaacacgactagaaatgcaacccacctgaatagtcggataggtgttggca 1392

                                                                        
Query: 454  gcagccttgtccccaatcagcaatgaatcacactgagaagagttatacgcattctctgca 513
            ||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| 
Sbjct: 1391 gcagcgttatccccaatcagcaaagaatcacactgtgaagaattataagcattttctgcg 1332

                                                                        
Query: 514  cctgaattcatctggaccagcccacggtagcaattccttgacttccccgctgagataccc 573
            ||||| || |||||||||| ||||||||||||||||| ||||||||| ||||||||||| 
Sbjct: 1331 cctgagtttatctggaccaacccacggtagcaattccgtgacttcccagctgagatacct 1272

                                                                        
Query: 574  ttggatataatccggctgcgtgaattcttccccttgtggatcatctttgtccctgtatcg 633
            |||||||||||||| || || |||||||| |||||||||||||| ||||||||||| || 
Sbjct: 1271 ttggatataatccgactccgcgaattctttcccttgtggatcatttttgtccctgtgtct 1212

                             
Query: 634  gcctgctggtaatcctt 650
            |||||||||||||||||
Sbjct: 1211 gcctgctggtaatcctt 1195
to top
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full
            insert sequence
          Length = 1978

 Score =  438 bits (221), Expect = e-119
 Identities = 383/437 (87%)
 Strand = Plus / Minus

                                                                        
Query: 214  ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 273
            |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 1677 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1618

                                                                        
Query: 274  ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 333
            ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 1617 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1558

                                                                        
Query: 334  tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 393
            || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 1557 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1498

                                                                        
Query: 394  gcttcatgctcaacacggccactagtacaacccacctgaatggtgggataggtgttagca 453
            || |||||||||||||| | |  | | |||||||||||||| || ||||||||||| |||
Sbjct: 1497 gcctcatgctcaacacgactagaaatgcaacccacctgaatagtcggataggtgttggca 1438

                                                                        
Query: 454  gcagccttgtccccaatcagcaatgaatcacactgagaagagttatacgcattctctgca 513
            ||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| 
Sbjct: 1437 gcagcgttatccccaatcagcaaagaatcacactgtgaagaattataagcattttctgcg 1378

                                                                        
Query: 514  cctgaattcatctggaccagcccacggtagcaattccttgacttccccgctgagataccc 573
            ||||| || |||||||||| ||||||||||||||||| ||||||||| ||||||||||| 
Sbjct: 1377 cctgagtttatctggaccaacccacggtagcaattccgtgacttcccagctgagatacct 1318

                                                                        
Query: 574  ttggatataatccggctgcgtgaattcttccccttgtggatcatctttgtccctgtatcg 633
            |||||||||||||| || || |||||||| |||||||||||||| ||||||||||| || 
Sbjct: 1317 ttggatataatccgactccgcgaattctttcccttgtggatcatttttgtccctgtgtct 1258

                             
Query: 634  gcctgctggtaatcctt 650
            |||||||||||||||||
Sbjct: 1257 gcctgctggtaatcctt 1241



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 67   aaacgtccatttatcatgtaatttattcttctca 100
            |||||||||||  ||||| |||||||||||||||
Sbjct: 1782 aaacgtccattgctcatgcaatttattcttctca 1749
to top
>gb|AY103958.1| Zea mays PCO141591 mRNA sequence
          Length = 1691

 Score =  430 bits (217), Expect = e-117
 Identities = 385/441 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  ttagccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactc 269
            |||||||||||||||||| || ||||||||||| ||||| ||||||||||| || || ||
Sbjct: 1389 ttagccaactgatccctcgagtttcaggttcatgagtgcgtccacctcctgtgcgaattc 1330

                                                                        
Query: 270  gtaaggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggcctt 329
             || |||||||| || || || |  || ||||||||||| |||||||| ||||| |||||
Sbjct: 1329 atagggaaggtgctcgaaaacagatctgcagaatccaccaatcatggcggcaactgcctt 1270

                                                                        
Query: 330  ttcatgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgt 389
            ||||||||||| ||| |||||||| || ||||| ||||| ||||||||||||||||| ||
Sbjct: 1269 ttcatgatctacccctctttgctggaaataaaatagctgatcctctccaattttggaagt 1210

                                                                        
Query: 390  gcttgcttcatgctcaacacggccactagtacaacccacctgaatggtgggataggtgtt 449
            |||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1209 gcttgcctcatgctcaacccggccactagtgcaccccacctgaatggtgggataggtgtt 1150

                                                                        
Query: 450  agcagcagccttgtccccaatcagcaatgaatcacactgagaagagttatacgcattctc 509
             ||||| || || ||||| |||| |||||| |||||||| ||||| ||||| ||||||||
Sbjct: 1149 cgcagccgcattatccccgatcaacaatgagtcacactgtgaagaattataagcattctc 1090

                                                                        
Query: 510  tgcacctgaattcatctggaccagcccacggtagcaattccttgacttccccgctgagat 569
            |||||  || |||||| ||||||  |||||||||||||||||||||||||| || |||||
Sbjct: 1089 tgcactagagttcatcaggaccaagccacggtagcaattccttgacttccctgcagagat 1030

                                                                        
Query: 570  acccttggatataatccggctgcgtgaattcttccccttgtggatcatctttgtccctgt 629
             ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 1029 gcccttggatataatccggctgcgtgaatttttccccttgtggatcattttcgtccctgt 970

                                 
Query: 630  atcggcctgctggtaatcctt 650
             || || |||||| |||||||
Sbjct: 969  gtctgcttgctggcaatcctt 949
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  254 bits (128), Expect = 3e-64
 Identities = 200/224 (89%)
 Strand = Plus / Plus

                                                                            
Query: 427      acctgaatggtgggataggtgttagcagcagccttgtccccaatcagcaatgaatcacac 486
                |||||||| || ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 35500317 acctgaatagtcggataggtgttggcagcagcgttatccccaatcagcaaagaatcacac 35500376

                                                                            
Query: 487      tgagaagagttatacgcattctctgcacctgaattcatctggaccagcccacggtagcaa 546
                || ||||| ||||| ||||| ||||| ||||| || |||||||||| |||||||||||||
Sbjct: 35500377 tgtgaagaattataagcattttctgcgcctgagtttatctggaccaacccacggtagcaa 35500436

                                                                            
Query: 547      ttccttgacttccccgctgagatacccttggatataatccggctgcgtgaattcttcccc 606
                |||| ||||||||| ||||||||||| |||||||||||||| || || |||||||| |||
Sbjct: 35500437 ttccgtgacttcccagctgagatacctttggatataatccgactccgcgaattctttccc 35500496

                                                            
Query: 607      ttgtggatcatctttgtccctgtatcggcctgctggtaatcctt 650
                ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 35500497 ttgtggatcatttttgtccctgtgtctgcctgctggtaatcctt 35500540



 Score =  200 bits (101), Expect = 4e-48
 Identities = 173/197 (87%)
 Strand = Plus / Plus

                                                                            
Query: 214      ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 273
                |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 35499073 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 35499132

                                                                            
Query: 274      ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 333
                ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 35499133 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 35499192

                                                                            
Query: 334      tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 393
                || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 35499193 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 35499252

                                 
Query: 394      gcttcatgctcaacacg 410
                || ||||||||||||||
Sbjct: 35499253 gcctcatgctcaacacg 35499269



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 67       aaacgtccatttatcatgtaatttattcttctca 100
                |||||||||||  ||||| |||||||||||||||
Sbjct: 35498968 aaacgtccattgctcatgcaatttattcttctca 35499001
to top
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446G04
          Length = 143515

 Score =  254 bits (128), Expect = 3e-64
 Identities = 200/224 (89%)
 Strand = Plus / Plus

                                                                         
Query: 427   acctgaatggtgggataggtgttagcagcagccttgtccccaatcagcaatgaatcacac 486
             |||||||| || ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 30504 acctgaatagtcggataggtgttggcagcagcgttatccccaatcagcaaagaatcacac 30563

                                                                         
Query: 487   tgagaagagttatacgcattctctgcacctgaattcatctggaccagcccacggtagcaa 546
             || ||||| ||||| ||||| ||||| ||||| || |||||||||| |||||||||||||
Sbjct: 30564 tgtgaagaattataagcattttctgcgcctgagtttatctggaccaacccacggtagcaa 30623

                                                                         
Query: 547   ttccttgacttccccgctgagatacccttggatataatccggctgcgtgaattcttcccc 606
             |||| ||||||||| ||||||||||| |||||||||||||| || || |||||||| |||
Sbjct: 30624 ttccgtgacttcccagctgagatacctttggatataatccgactccgcgaattctttccc 30683

                                                         
Query: 607   ttgtggatcatctttgtccctgtatcggcctgctggtaatcctt 650
             ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 30684 ttgtggatcatttttgtccctgtgtctgcctgctggtaatcctt 30727



 Score =  200 bits (101), Expect = 4e-48
 Identities = 173/197 (87%)
 Strand = Plus / Plus

                                                                         
Query: 214   ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 273
             |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 29260 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 29319

                                                                         
Query: 274   ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 333
             ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 29320 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 29379

                                                                         
Query: 334   tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 393
             || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 29380 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 29439

                              
Query: 394   gcttcatgctcaacacg 410
             || ||||||||||||||
Sbjct: 29440 gcctcatgctcaacacg 29456



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 67    aaacgtccatttatcatgtaatttattcttctca 100
             |||||||||||  ||||| |||||||||||||||
Sbjct: 29155 aaacgtccattgctcatgcaatttattcttctca 29188
to top
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1088C09
          Length = 154084

 Score =  254 bits (128), Expect = 3e-64
 Identities = 200/224 (89%)
 Strand = Plus / Plus

                                                                          
Query: 427    acctgaatggtgggataggtgttagcagcagccttgtccccaatcagcaatgaatcacac 486
              |||||||| || ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 124266 acctgaatagtcggataggtgttggcagcagcgttatccccaatcagcaaagaatcacac 124325

                                                                          
Query: 487    tgagaagagttatacgcattctctgcacctgaattcatctggaccagcccacggtagcaa 546
              || ||||| ||||| ||||| ||||| ||||| || |||||||||| |||||||||||||
Sbjct: 124326 tgtgaagaattataagcattttctgcgcctgagtttatctggaccaacccacggtagcaa 124385

                                                                          
Query: 547    ttccttgacttccccgctgagatacccttggatataatccggctgcgtgaattcttcccc 606
              |||| ||||||||| ||||||||||| |||||||||||||| || || |||||||| |||
Sbjct: 124386 ttccgtgacttcccagctgagatacctttggatataatccgactccgcgaattctttccc 124445

                                                          
Query: 607    ttgtggatcatctttgtccctgtatcggcctgctggtaatcctt 650
              ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 124446 ttgtggatcatttttgtccctgtgtctgcctgctggtaatcctt 124489



 Score =  200 bits (101), Expect = 4e-48
 Identities = 173/197 (87%)
 Strand = Plus / Plus

                                                                          
Query: 214    ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 273
              |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 123022 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 123081

                                                                          
Query: 274    ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 333
              ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 123082 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 123141

                                                                          
Query: 334    tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 393
              || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 123142 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 123201

                               
Query: 394    gcttcatgctcaacacg 410
              || ||||||||||||||
Sbjct: 123202 gcctcatgctcaacacg 123218



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 67     aaacgtccatttatcatgtaatttattcttctca 100
              |||||||||||  ||||| |||||||||||||||
Sbjct: 122917 aaacgtccattgctcatgcaatttattcttctca 122950
to top
>gb|AY943856.1| Nicotiana benthamiana non-intrinsic ABC protein mRNA, partial cds
          Length = 1638

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctggtaat 646
            ||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 1254 attcttccctttgtgtatcatctttgtccctgtatccgcctgctgataat 1205
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 607     ttgtggatcatctttgtccctgtatcggcctgctggtaat 646
               |||||||||||||| || || |||||||||||||||||||
Sbjct: 2581177 ttgtggatcatcttggtgccggtatcggcctgctggtaat 2581216
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 609     gtggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||||||| || ||||||||||||||
Sbjct: 1833510 gtggatcatctttgtgccggtatcggcctgctg 1833478
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                    
Query: 608     tgtggatcatctttgtccctgtatcggcctgctggta 644
               ||||||||||||| || || |||||||||||||||||
Sbjct: 1466732 tgtggatcatcttagtgccggtatcggcctgctggta 1466696
to top
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 367     tggtcctctccaattttggatgtgcttgcttcatgctcaacacg 410
               ||||||||||||||||| || ||  ||||||| |||||||||||
Sbjct: 1309697 tggtcctctccaattttagaggtagttgcttcgtgctcaacacg 1309740
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 608     tgtggatcatctttgtccctgtatcggcctgctggt 643
               ||||||||||||| || || ||||||||||||||||
Sbjct: 2001115 tgtggatcatcttggtgccggtatcggcctgctggt 2001080
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 608     tgtggatcatctttgtccctgtatcggcctgctgg 642
               ||||||||||||| || || |||||||||||||||
Sbjct: 1038533 tgtggatcatcttggtgccggtatcggcctgctgg 1038567
to top
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence
          Length = 195082

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 235   aggttcataagtgcatccacct 256
             ||||||||||||||||||||||
Sbjct: 95114 aggttcataagtgcatccacct 95093
to top
>gb|AF329697.1| Xanthomonas oryzae pv. oryzae insertion sequence IS1051-X and
            insertion sequence IS1389-X, complete sequence
          Length = 17229

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 608  tgtggatcatctttgtccctgtatcggcctgctg 641
            ||||||||||||| || || ||||||||||||||
Sbjct: 4582 tgtggatcatcttggtgccggtatcggcctgctg 4549
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 608     tgtggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||||| || || ||||||||||||||
Sbjct: 1413528 tgtggatcatcttggtgccggtatcggcctgctg 1413561
to top
>gb|AE012389.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 297
            of 460 of the complete genome
          Length = 13391

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 608  tgtggatcatctttgtccctgtatcggcctgctg 641
            ||||||||||||| || || ||||||||||||||
Sbjct: 9428 tgtggatcatcttggtgccggtatcggcctgctg 9395
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 608     tgtggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||||| || || ||||||||||||||
Sbjct: 1634164 tgtggatcatcttggtgccggtatcggcctgctg 1634197
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 608     tgtggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||||| || || ||||||||||||||
Sbjct: 1439182 tgtggatcatcttggtgccggtatcggcctgctg 1439215
to top
>ref|NM_116715.3| Arabidopsis thaliana ATABC1 AT4G04770 (ATABC1) mRNA, complete cds
          Length = 1937

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1352 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1308
to top
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   atgtgcttgcttcatgctcaa 406
             |||||||||||||||||||||
Sbjct: 79552 atgtgcttgcttcatgctcaa 79572
to top
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13
          Length = 200001

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 597    attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
              |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 155515 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 155559
to top
>gb|AY142069.1| Arabidopsis thaliana At4g04770/T4B21_16 mRNA, complete cds
          Length = 1674

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1287 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1243
to top
>emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686C2092 (from clone
           DKFZp686C2092)
          Length = 4427

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 329 tttcatgatctatcccccttt 349
           |||||||||||||||||||||
Sbjct: 690 tttcatgatctatcccccttt 710
to top
>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence
          Length = 160726

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   atgatatttcacatacttgtt 198
             |||||||||||||||||||||
Sbjct: 30150 atgatatttcacatacttgtt 30130
to top
>gb|AY056410.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds
          Length = 1842

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1291 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1247
to top
>gb|AY052195.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds
          Length = 1904

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1354 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1310
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 610     tggatcatctttgtccctgtatcggcctgctgg 642
               ||||||||||| || || |||||||||||||||
Sbjct: 2992619 tggatcatcttggtgccggtatcggcctgctgg 2992651
to top
>tpg|BK001497.1| TPA: TPA_exp: Arabidopsis thaliana putative ABC transporter 1 mRNA,
            complete cds; nuclear gene for plastid product
          Length = 1674

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1287 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1243
to top
>emb|BX827948.1|CNS0A3VL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH38ZA11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 678

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 597 attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
           |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 95  attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 51
to top
>emb|BX827675.1|CNS0A3OT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS9ZB06 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1812

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 597  attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
            |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 1351 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 1307
to top
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 378    aattttggatgtgcttgcttcatgctcaa 406
              ||||||||||||  |||||||||||||||
Sbjct: 724261 aattttggatgttgttgcttcatgctcaa 724233
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 613     atcatctttgtccctgtatcggcctgctg 641
               |||||||||||||| |||||||| |||||
Sbjct: 2992725 atcatctttgtcccggtatcggcttgctg 2992697
to top
>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21
          Length = 91470

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 597   attcttccccttgtggatcatctttgtccctgtatcggcctgctg 641
             |||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 43837 attctttcctttgtgaatcatcttagtccctgtatcagcttgctg 43881
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 610     tggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||| || || ||||||||||||||
Sbjct: 2150015 tggatcatcttggtgccggtatcggcctgctg 2150046
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 610     tggatcatctttgtccctgtatcggcctgctg 641
               ||||||||||| || || ||||||||||||||
Sbjct: 2172096 tggatcatcttggtgccggtatcggcctgctg 2172127
to top
>gb|BC070011.1| Danio rerio zgc:73404, mRNA (cDNA clone MGC:85750 IMAGE:6525879),
           complete cds
          Length = 1768

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  ttattcttctcagtctcata 108
           ||||||||||||||||||||
Sbjct: 251 ttattcttctcagtctcata 232
to top
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence
          Length = 105327

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   ttttggatgtgcttgcttcatgct 403
             ||||||||||||||| ||||||||
Sbjct: 16284 ttttggatgtgcttgtttcatgct 16261
to top
>gb|AC145516.4| Mus musculus BAC clone RP24-157K17 from chromosome Y, complete sequence
          Length = 202847

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tctcatactgctgctgtaca 121
             ||||||||||||||||||||
Sbjct: 30556 tctcatactgctgctgtaca 30575
to top
>gb|AC123928.3| Mus musculus BAC clone RP24-390L8 from chromosome Y, complete sequence
          Length = 154303

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 128688 tctcatactgctgctgtaca 128707
to top
>gb|AC145607.3| Mus musculus BAC clone RP24-270N6 from chromosome Y, complete sequence
          Length = 195706

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 150264 tctcatactgctgctgtaca 150245
to top
>gb|AC144627.2| Mus musculus BAC clone RP24-164A21 from chromosome Y, complete sequence
          Length = 135780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tctcatactgctgctgtaca 121
             ||||||||||||||||||||
Sbjct: 40237 tctcatactgctgctgtaca 40256
to top
>gb|AC145563.2| Mus musculus BAC clone RP24-75L3 from chromosome Y, complete sequence
          Length = 204641

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tctcatactgctgctgtaca 121
             ||||||||||||||||||||
Sbjct: 81915 tctcatactgctgctgtaca 81934
to top
>gb|AC145566.4| Mus musculus BAC clone RP24-79A15 from chromosome Y, complete sequence
          Length = 163909

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tctcatactgctgctgtaca 121
             ||||||||||||||||||||
Sbjct: 44515 tctcatactgctgctgtaca 44534
to top
>gb|AC144857.3| Mus musculus BAC clone RP24-168C21 from chromosome Y, complete sequence
          Length = 156433

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 112531 tctcatactgctgctgtaca 112512
to top
>gb|AC132295.4| Mus musculus BAC clone RP24-325L5 from chromosome Y, complete sequence
          Length = 179299

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tctcatactgctgctgtaca 121
             ||||||||||||||||||||
Sbjct: 52661 tctcatactgctgctgtaca 52680
to top
>emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in linkage group 6,
              complete sequence
          Length = 178487

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ttattcttctcagtctcata 108
              ||||||||||||||||||||
Sbjct: 134002 ttattcttctcagtctcata 133983
to top
>gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosome 18, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     tttattcttctcagtctcatactg 111
              ||||||||||||||||||| ||||
Sbjct: 105921 tttattcttctcagtctcagactg 105898
to top
>gb|DQ277922.1| Mus musculus clone Bgal-Synd+.08b immunoglobulin lambda1 light
           chain variable region gene, partial cds
          Length = 279

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 454 gcagccttgtccccaatcag 473
           ||||||||||||||||||||
Sbjct: 212 gcagccttgtccccaatcag 193
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 609     gtggatcatctttgtccctgtatcggcctgctggta 644
               |||||||||||| || || || ||||||||||||||
Sbjct: 4501679 gtggatcatcttggtgccggtgtcggcctgctggta 4501644
to top
>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3
             Contains the 5' end of the MAP3K7 gene for
             mitogen-activated protein kinase kinase kinase 7 (TGF-beta
             activated kinase 1, TAK1) and two CpG islands, complete
             sequence
          Length = 86398

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    atcatgtaatttattcttct 98
             ||||||||||||||||||||
Sbjct: 51924 atcatgtaatttattcttct 51943
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 613     atcatctttgtccctgtatcggcctgctggta 644
               |||||||| || || |||||||||||||||||
Sbjct: 1473513 atcatcttggtgccggtatcggcctgctggta 1473544
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 613     atcatctttgtccctgtatcggcctgctggta 644
               |||||||| || || |||||||||||||||||
Sbjct: 2210698 atcatcttggtgccggtatcggcctgctggta 2210667
to top
>gb|AC175526.4| Mus musculus BAC clone RP24-84E22 from chromosome y, complete sequence
          Length = 206636

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 122945 tctcatactgctgctgtaca 122964
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 607    ttgtggatcatctttgtccctgtatcggcctg 638
              |||||||||||||| || || |||||||||||
Sbjct: 202870 ttgtggatcatcttggtgccggtatcggcctg 202839
to top
>gb|AC175668.3| Mus musculus BAC clone RP24-319G11 from chromosome y, complete sequence
          Length = 160204

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 101275 tctcatactgctgctgtaca 101294
to top
>gb|AC134557.4| Mus musculus chromosome UNK clone RP24-323H18, complete sequence
          Length = 170283

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tctcatactgctgctgtaca 121
              ||||||||||||||||||||
Sbjct: 115598 tctcatactgctgctgtaca 115617
to top
>gb|AC142129.4| Rattus norvegicus  BAC CH230-183M21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 215272

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    atactgctgctgtacacatg 125
              ||||||||||||||||||||
Sbjct: 161462 atactgctgctgtacacatg 161443
to top
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 610    tggatcatctttgtccctgtatcggcctgctg 641
              ||||||||||| || || ||||||||||||||
Sbjct: 115959 tggatcatcttcgtgcccgtatcggcctgctg 115990
to top
>emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, complete sequence
          Length = 231581

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ttattcttctcagtctcata 108
              ||||||||||||||||||||
Sbjct: 178967 ttattcttctcagtctcata 178948


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,560
Number of Sequences: 3902068
Number of extensions: 5378560
Number of successful extensions: 101632
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101228
Number of HSP's gapped (non-prelim): 399
length of query: 653
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 630
effective length of database: 17,143,297,704
effective search space: 10800277553520
effective search space used: 10800277553520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top