ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
2gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
4gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosom... 46 0.10
5gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 46 0.10
6gb|AC174081.1| Mus musculus BAC clone RP24-376P15 from chromosom... 46 0.10
7gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.41
8gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.41
9gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.41
10gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Can... 44 0.41
11gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.41
12gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.41
13gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 44 0.41
14gb|AE010368.1| Methanopyrus kandleri AV19 section 67 of 157 of t... 42 1.6
15gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, co... 42 1.6
16gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, c... 42 1.6
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.6
18gb|BC105767.1| Rattus norvegicus xylosyltransferase II, mRNA (cD... 40 6.5
19ref|NM_022296.2| Rattus norvegicus xylosyltransferase II (Xylt2)... 40 6.5
20gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, com... 40 6.5
21gb|AC105323.28| Mus musculus chromosome 3, clone RP23-424L10, co... 40 6.5
22gb|AE013198.1| Thermoanaerobacter tengcongensis MB4, section 225... 40 6.5
23ref|XM_420162.1| PREDICTED: Gallus gallus similar to Oligophreni... 40 6.5
24gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, com... 40 6.5
25gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, co... 40 6.5
26gb|AC132106.4| Mus musculus BAC clone RP24-240D2 from chromosome... 40 6.5
27emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chro... 40 6.5
28gb|AC112256.4| Mus musculus BAC clone RP23-40C8 from 10, complet... 40 6.5
29gb|AC121576.2| Mus musculus BAC clone RP23-244D21 from 18, compl... 40 6.5
30gb|AC146173.2| Pan troglodytes BAC clone RP43-36F20 from 7, comp... 40 6.5
31gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, comple... 40 6.5
32gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, co... 40 6.5
33emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chro... 40 6.5
34emb|AL139133.8| Human DNA sequence from clone RP11-185C19 on chr... 40 6.5
35emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.5
36gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Canc... 40 6.5
37gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosom... 40 6.5
38gb|AC119840.12| Mus musculus chromosome 3, clone RP24-112E5, com... 40 6.5
39dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 40 6.5
40gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.5
41gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cance... 40 6.5
42gb|AC149092.6| Pan troglodytes BAC clone CH251-553I6 from chromo... 40 6.5
43gb|AC161019.3| Pan troglodytes BAC clone CH251-7O2 from chromoso... 40 6.5
44gb|AC155643.8| Mus musculus 10 BAC RP24-132F13 (Roswell Park Can... 40 6.5
45gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, comple... 40 6.5
46emb|CR387771.1| Gallus gallus finished cDNA, clone ChEST535m13 40 6.5
47gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosom... 40 6.5
48gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 1... 40 6.5
49gb|AC158623.5| Mus musculus 10 BAC RP23-302A11 (Roswell Park Can... 40 6.5
50emb|BX005167.12| Mouse DNA sequence from clone RP23-247K19 on ch... 40 6.5
51gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, com... 40 6.5
52gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y... 40 6.5
53gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, co... 40 6.5
54emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 40 6.5
55emb|AJ969201.2| Helicobacter pullorum partial gyrB gene for gyra... 40 6.5
56emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in... 40 6.5
57emb|AJ295749.2|RNO295749 Rattus norvegicus mRNA for xylosyltrans... 40 6.5
58gb|AC148935.6| Pan troglodytes BAC clone CH251-485J2 from chromo... 40 6.5
59gb|AC140402.2| Mus musculus BAC clone RP24-90D2 from 10, complet... 40 6.5
60gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map ... 40 6.5

>dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full
           insert sequence
          Length = 924

 Score =  113 bits (57), Expect = 5e-22
 Identities = 75/81 (92%)
 Strand = Plus / Minus

                                                                       
Query: 335 acaataggagagtccactgcaaagtatttagtagtacagtgaaccttgccaccaatcacc 394
           |||| ||||||| || |||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 684 acaaaaggagagccctctgcaaagtacttagtaatagagtgaaccttgccaccaatcacc 625

                                
Query: 395 tctggtagccagggagccatc 415
           |||||||||||||||||||||
Sbjct: 624 tctggtagccagggagccatc 604



to top

>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06,
            complete sequence
          Length = 145323

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                   
Query: 377  accttgccaccaatcacctctggtagccagggagccatc 415
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 3156 accttgccaccaatcacctctggtagccagggagccatc 3194



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 377      accttgccaccaatcacctctggtagccagggagccatc 415
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 22159891 accttgccaccaatcacctctggtagccagggagccatc 22159929



to top

>gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosome 6, complete sequence
          Length = 147836

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 154   gggcaaacaaaagggaaatacatatatatgt 184
             ||||||||| |||||||||||| ||||||||
Sbjct: 49175 gggcaaacagaagggaaatacagatatatgt 49205



to top

>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
             cluster, cholinesterase, and COLP5alpha genes, complete
             sequence
          Length = 796348

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 257   cttcttctttttatgcctgatga 279
             |||||||||||||||||||||||
Sbjct: 81631 cttcttctttttatgcctgatga 81609



to top

>gb|AC174081.1| Mus musculus BAC clone RP24-376P15 from chromosome 6, complete sequence
          Length = 153392

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 154    gggcaaacaaaagggaaatacatatatatgt 184
              ||||||||| |||||||||||| ||||||||
Sbjct: 130419 gggcaaacagaagggaaatacagatatatgt 130449



to top

>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1624461 aaacaaaagggaaatacatata 1624440



to top

>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1595401 aaacaaaagggaaatacatata 1595380



to top

>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1595353 aaacaaaagggaaatacatata 1595332



to top

>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 185202

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 171    atacatatatatgtctacatct 192
              ||||||||||||||||||||||
Sbjct: 150063 atacatatatatgtctacatct 150042



to top

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1621516 aaacaaaagggaaatacatata 1621495



to top

>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1595278 aaacaaaagggaaatacatata 1595257



to top

>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 158     aaacaaaagggaaatacatata 179
               ||||||||||||||||||||||
Sbjct: 1720668 aaacaaaagggaaatacatata 1720647



to top

>gb|AE010368.1| Methanopyrus kandleri AV19 section 67 of 157 of the complete genome
          Length = 12015

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  cctaccagctcgacctgctcc 318
            |||||||||||||||||||||
Sbjct: 7778 cctaccagctcgacctgctcc 7758



to top

>gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, complete sequence
          Length = 82781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   aaaagggaaatacatatatat 182
             |||||||||||||||||||||
Sbjct: 74475 aaaagggaaatacatatatat 74495



to top

>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence
          Length = 184864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   aaaagggaaatacatatatat 182
             |||||||||||||||||||||
Sbjct: 12999 aaaagggaaatacatatatat 13019



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 246     ccccactatgacttcttcttt 266
               |||||||||||||||||||||
Sbjct: 3720250 ccccactatgacttcttcttt 3720270



to top

>gb|BC105767.1| Rattus norvegicus xylosyltransferase II, mRNA (cDNA clone MGC:124608
            IMAGE:7930580), complete cds
          Length = 3375

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  cctctggtagccagggagcc 412
            ||||||||||||||||||||
Sbjct: 3127 cctctggtagccagggagcc 3146



to top

>ref|NM_022296.2| Rattus norvegicus xylosyltransferase II (Xylt2), mRNA
          Length = 3375

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  cctctggtagccagggagcc 412
            ||||||||||||||||||||
Sbjct: 3127 cctctggtagccagggagcc 3146



to top

>gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, complete sequence
          Length = 172336

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 356    aagtatttagtagtacagtgaacc 379
              |||||||||| |||||||||||||
Sbjct: 154461 aagtatttagaagtacagtgaacc 154484



to top

>gb|AC105323.28| Mus musculus chromosome 3, clone RP23-424L10, complete sequence
          Length = 183897

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaagggaaatacatatatat 182
             ||||||||||||||||||||
Sbjct: 71983 aaagggaaatacatatatat 72002



to top

>gb|AE013198.1| Thermoanaerobacter tengcongensis MB4, section 225 of 244 of the
            complete genome
          Length = 10429

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  gctcctttttattccttgtt 333
            ||||||||||||||||||||
Sbjct: 4811 gctcctttttattccttgtt 4830



to top

>ref|XM_420162.1| PREDICTED: Gallus gallus similar to Oligophrenin 1 (LOC422163), mRNA
          Length = 1928

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 99   tttgctgctgccctgccagtccca 122
            ||||||||||||||||||| ||||
Sbjct: 1412 tttgctgctgccctgccagcccca 1389



to top

>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tacatatatatgtctacatc 191
              ||||||||||||||||||||
Sbjct: 166273 tacatatatatgtctacatc 166292



to top

>gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   acaaaagggaaatacatatatatg 183
             |||||||||||||| |||||||||
Sbjct: 28576 acaaaagggaaatatatatatatg 28599



to top

>gb|AC132106.4| Mus musculus BAC clone RP24-240D2 from chromosome 17, complete sequence
          Length = 169722

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   atacatatatatgtctacat 190
             ||||||||||||||||||||
Sbjct: 58248 atacatatatatgtctacat 58267



to top

>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete
              sequence
          Length = 258862

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    agtcccattacacttcagca 135
              ||||||||||||||||||||
Sbjct: 205688 agtcccattacacttcagca 205669



to top

>gb|AC112256.4| Mus musculus BAC clone RP23-40C8 from 10, complete sequence
          Length = 157928

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 126583 atacatatatatgtctacat 126564



to top

>gb|AC121576.2| Mus musculus BAC clone RP23-244D21 from 18, complete sequence
          Length = 158243

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   acaaaagggaaatacatatatatg 183
             |||||||||||||| |||||||||
Sbjct: 21887 acaaaagggaaatatatatatatg 21864



to top

>gb|AC146173.2| Pan troglodytes BAC clone RP43-36F20 from 7, complete sequence
          Length = 197121

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   caaaagggaaatacatatatatgt 184
             |||||||||| |||||||||||||
Sbjct: 40075 caaaagggaattacatatatatgt 40098



to top

>gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, complete sequence
          Length = 198786

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    caaaagggaaatacatatatatgt 184
              |||||||||| |||||||||||||
Sbjct: 104749 caaaagggaattacatatatatgt 104772



to top

>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tacatatatatgtctacatc 191
             ||||||||||||||||||||
Sbjct: 95967 tacatatatatgtctacatc 95986



to top

>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the 5'
              end of the SLICK gene for a sodium- and chloride-activated
              ATP-sensitive potassium channel, complete sequence
          Length = 185560

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    gaaatacatatatatgtcta 187
              ||||||||||||||||||||
Sbjct: 154498 gaaatacatatatatgtcta 154517



to top

>emb|AL139133.8| Human DNA sequence from clone RP11-185C19 on chromosome 1q31.1-31.3
            Contains the 3' end of the HRPT2 gene for
            hyperparathyroidism 2 (with jaw tumor), complete sequence
          Length = 19720

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 349  cactgcaaagtatttagtag 368
            ||||||||||||||||||||
Sbjct: 6289 cactgcaaagtatttagtag 6270



to top

>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 137    tcaaatcaggtaacatagggcaaa 160
              ||||||||||||||||||| ||||
Sbjct: 205968 tcaaatcaggtaacataggccaaa 205991



to top

>gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214578

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    aaccttgccaccaatcacct 395
              ||||||||||||||||||||
Sbjct: 169230 aaccttgccaccaatcacct 169249



to top

>gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosome 10, complete
             sequence
          Length = 209583

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   atacatatatatgtctacat 190
             ||||||||||||||||||||
Sbjct: 42345 atacatatatatgtctacat 42326



to top

>gb|AC119840.12| Mus musculus chromosome 3, clone RP24-112E5, complete sequence
          Length = 206159

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    aaagggaaatacatatatat 182
              ||||||||||||||||||||
Sbjct: 205625 aaagggaaatacatatatat 205644



to top

>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tacatatatatgtctacatc 191
              ||||||||||||||||||||
Sbjct: 115385 tacatatatatgtctacatc 115404



to top

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      tacatatatatgtctacatc 191
                ||||||||||||||||||||
Sbjct: 20843615 tacatatatatgtctacatc 20843596



to top

>gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 250218

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   aaccttgccaccaatcacct 395
             ||||||||||||||||||||
Sbjct: 97913 aaccttgccaccaatcacct 97932



to top

>gb|AC149092.6| Pan troglodytes BAC clone CH251-553I6 from chromosome 7, complete
             sequence
          Length = 194702

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaagggaaatacatatatat 182
             ||||||||||||||||||||
Sbjct: 73251 aaagggaaatacatatatat 73270



to top

>gb|AC161019.3| Pan troglodytes BAC clone CH251-7O2 from chromosome 7, complete
             sequence
          Length = 165769

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   aaagggaaatacatatatat 182
             ||||||||||||||||||||
Sbjct: 62235 aaagggaaatacatatatat 62216



to top

>gb|AC155643.8| Mus musculus 10 BAC RP24-132F13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 187480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 143501 atacatatatatgtctacat 143482



to top

>gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, complete sequence
          Length = 178105

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    aaagggaaatacatatatat 182
              ||||||||||||||||||||
Sbjct: 163652 aaagggaaatacatatatat 163633



to top

>emb|CR387771.1| Gallus gallus finished cDNA, clone ChEST535m13
          Length = 1425

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  tttgctgctgccctgccagtccca 122
           ||||||||||||||||||| ||||
Sbjct: 889 tttgctgctgccctgccagcccca 866



to top

>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete sequence
          Length = 141092

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    agtcccattacacttcagca 135
              ||||||||||||||||||||
Sbjct: 128605 agtcccattacacttcagca 128586



to top

>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence
          Length = 177314

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gaaatacatatatatgtcta 187
             ||||||||||||||||||||
Sbjct: 76956 gaaatacatatatatgtcta 76975



to top

>gb|AC158623.5| Mus musculus 10 BAC RP23-302A11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191932

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 112899 atacatatatatgtctacat 112918



to top

>emb|BX005167.12| Mouse DNA sequence from clone RP23-247K19 on chromosome X, complete
              sequence
          Length = 212046

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 176469 atacatatatatgtctacat 176488



to top

>gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, complete sequence
          Length = 168525

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 356   aagtatttagtagtacagtgaacc 379
             |||||||||| |||||||||||||
Sbjct: 42697 aagtatttagaagtacagtgaacc 42720



to top

>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tacatatatatgtctacatc 191
              ||||||||||||||||||||
Sbjct: 160407 tacatatatatgtctacatc 160426



to top

>gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, complete sequence
          Length = 180157

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   agggcaaacaaaagggaaatacat 176
             |||| |||||||||||||||||||
Sbjct: 89881 agggaaaacaaaagggaaatacat 89858



to top

>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7,
             complete sequence
          Length = 199752

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   tgtcaactctacagcctacc 303
             ||||||||||||||||||||
Sbjct: 80725 tgtcaactctacagcctacc 80706



to top

>emb|AJ969201.2| Helicobacter pullorum partial gyrB gene for gyrase B, strain CCUG
           33842
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 153 agggcaaacaaaagggaaat 172
           ||||||||||||||||||||
Sbjct: 651 agggcaaacaaaagggaaat 670



to top

>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete
              sequence
          Length = 165569

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ctgatgactcatgtcaactc 292
              ||||||||||||||||||||
Sbjct: 102510 ctgatgactcatgtcaactc 102529



to top

>emb|AJ295749.2|RNO295749 Rattus norvegicus mRNA for xylosyltransferase II (XT-II gene)
          Length = 2806

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  cctctggtagccagggagcc 412
            ||||||||||||||||||||
Sbjct: 2669 cctctggtagccagggagcc 2688



to top

>gb|AC148935.6| Pan troglodytes BAC clone CH251-485J2 from chromosome 7, complete
             sequence
          Length = 215177

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaagggaaatacatatatat 182
             ||||||||||||||||||||
Sbjct: 84910 aaagggaaatacatatatat 84929



to top

>gb|AC140402.2| Mus musculus BAC clone RP24-90D2 from 10, complete sequence
          Length = 237935

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 220732 atacatatatatgtctacat 220713



to top

>gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map 17, complete sequence
          Length = 234061

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    atacatatatatgtctacat 190
              ||||||||||||||||||||
Sbjct: 180014 atacatatatatgtctacat 180033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,925,911
Number of Sequences: 3902068
Number of extensions: 4925911
Number of successful extensions: 124495
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124000
Number of HSP's gapped (non-prelim): 495
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top