ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24d08 |
|---|---|
| Clone Library Name | barley_pub |
>SYH_PASMU (P57988) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 32.3 bits (72), Expect = 0.78 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 417 THGCVRRSVDGSWIWNRGKETWRCGHVFQ 503 T GCVR +++ WI+N+ + W G +F+ Sbjct: 84 TAGCVRAAIEHGWIYNQEQRLWYMGPMFR 112
>SYH_HAEIN (P43823) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 422 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 417 THGCVRRSVDGSWIWNRGKETWRCGHVFQ 503 T GCVR +++ WI+N + W G +F+ Sbjct: 83 TAGCVRAAIEHGWIYNNEQRLWYIGPMFR 111
>SYH_HAEI8 (Q4QNH3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 417 THGCVRRSVDGSWIWNRGKETWRCGHVFQ 503 T GCVR +++ WI+N + W G +F+ Sbjct: 84 TAGCVRAAIEHGWIYNNEQRLWYIGPMFR 112
>PYRF_PROMM (Q7V5Y2) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 245 Score = 31.6 bits (70), Expect = 1.3 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +1 Query: 85 PCLLAFSTLLVQ*WAARRLGKVVAFAEKIQ-RVAWLVGLDATGQVGTHHLHPWNKIKLRP 261 P LLA + L W +RL + + +Q RV WL L A +G PW LR Sbjct: 119 PRLLAVTVLTS--WDQKRLANELCIPQSLQARVEWLAELAAESGLGGCVCSPWEVSGLRR 176 Query: 262 IAACHPTAHPLVRARYRRMG 321 + HP+ LV R G Sbjct: 177 L---HPSPFELVTPGIRPSG 193
>SYH_HAEDU (Q7VME1) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 31.2 bits (69), Expect = 1.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 417 THGCVRRSVDGSWIWNRGKETWRCGHVFQ 503 T GCVR ++ WI+N + W G +F+ Sbjct: 84 TAGCVRAAIQHGWIYNNEQRLWYMGPMFR 112
>ARAD_SALTY (P06190) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)| (Phosphoribulose isomerase) Length = 231 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/52 (25%), Positives = 20/52 (38%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRG 470 H H T IW + P+ G + + PCT ++G + W G Sbjct: 97 HSRHAT--IWAQAGQPIPATGTTHADYFYGTIPCTRKMTEAEINGEYEWETG 146
>ULAF_SHISS (Q3YUF0) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_SHIFL (Q83P26) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_SHIDS (Q328K0) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_SHIBS (P0C1B9) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_ECOLI (P39306) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_ECOL6 (Q8FAI6) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>ULAF_ECO57 (Q8XDI4) L-ribulose-5-phosphate 4-epimerase ulaF (EC 5.1.3.4)| (Phosphoribulose isomerase) (L-ascorbate utilization protein F) Length = 228 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/53 (28%), Positives = 19/53 (35%) Frame = +3 Query: 315 HGHHTTNIIWIERNLPMQTDGIARRPPWIQSNPCTHGCVRRSVDGSWIWNRGK 473 H H T W + L + G + PCT G V G + N GK Sbjct: 93 HTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGK 145
>NADB_ECOLI (P10902) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 540 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 435 RSVDGSWIWNRGKETWRCGH 494 R V G+W+WNR KET H Sbjct: 177 RRVVGAWVWNRNKETVETCH 196
>PURQ_MYCPA (Q743F9) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 224 Score = 29.3 bits (64), Expect = 6.6 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -1 Query: 310 GSVRARADEQLDGRQRSAGALFCSMGAGGGCRPDPSHPIQPTKQPSEFSL 161 G V R E L+G QR + + G G P P H I+ PS+ L Sbjct: 162 GRVVFRYHENLNGSQRDIAGVSSADGRVVGLMPHPEHAIEALTGPSDDGL 211
>LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-containing| leucocyte protein of 76 kDa) (SLP-76 tyrosine phosphoprotein) (SLP76) Length = 533 Score = 29.3 bits (64), Expect = 6.6 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Frame = +3 Query: 204 DGSGRHPPPAPMEQNKAPADRCL-----PSNCSSA-RARTLPPHGHHTTNIIWIERNLPM 365 DG +P E+ +A D PSN A ++ LPP+ H TN ++I+R Sbjct: 121 DGEDDGDYESPNEEEQALVDDAADYEPPPSNNEEALQSSILPPNSFHNTNSMYIDR---P 177 Query: 366 QTDGIARRPP 395 T ++++PP Sbjct: 178 PTGKVSQQPP 187
>CSN3_SCHPO (Q9UT51) COP9 signalosome complex subunit 3 (CSN complex subunit 3)| (SGN3) Length = 334 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/43 (25%), Positives = 25/43 (58%) Frame = -3 Query: 131 AAHYCTSSVEKASRHGWHENILYLASSFAPCMHVQLYYTWTIV 3 AA++C + + S W+ +ILY+ ++ H + YY++ ++ Sbjct: 121 AAYHCLGNNDLDSAKVWYFSILYIPTTTLTSFHEEAYYSFLLL 163
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 28.9 bits (63), Expect = 8.6 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +3 Query: 210 SGRHPPPAPMEQNKAPADRCLPSNCSSARARTLPP 314 SG H PP E K+P LP + SA+A T PP Sbjct: 832 SGAHQPPQTTEGEKSPEPLGLPQS-QSAQALTPPP 865
>TBL1X_HUMAN (O60907) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) (Transducin-beta-like 1, X-linked) (SMAP55) Length = 526 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Frame = -3 Query: 224 WVPT*PVASNPTNQATL*IFSANATT----LPSRLAAHYCTSSVEKASRHGWHENILYLA 57 W PT P SNP + L S ++T + + H T E + + YLA Sbjct: 411 WSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLA 470 Query: 56 S-SFAPCMHV 30 S SF C+H+ Sbjct: 471 SGSFDKCVHI 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,926,929 Number of Sequences: 219361 Number of extensions: 2106923 Number of successful extensions: 6108 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6107 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
