ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
2dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
3gb|AY946351.1| Oryza sativa microRNA miR396e precursor, gene, pa... 46 0.11
4dbj|AK066292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
5gb|AC068025.12| Homo sapiens chromosome 17, clone RP11-802D6, co... 42 1.8
6gb|AC114792.4| Homo sapiens BAC clone RP11-658J5 from 2, complet... 42 1.8
7gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, comple... 42 1.8
8gb|AC005412.8| Homo sapiens chromosome 17, clone RP11-22N12, com... 42 1.8
9emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, ... 42 1.8
10emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in... 42 1.8
11emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chr... 42 1.8
12gb|AC166364.2| Mus musculus BAC clone RP24-394E6 from chromosome... 40 6.9
13gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, co... 40 6.9
14gb|AC091309.13| Mus musculus chromosome 17, clone RP23-127L4, co... 40 6.9
15gb|AY554036.1| Oryza sativa (japonica cultivar-group) clone S180... 40 6.9
16gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosom... 40 6.9
17gb|AC103605.8| Mus musculus chromosome 3, clone RP23-335H1, comp... 40 6.9
18ref|XM_390741.1| Gibberella zeae PH-1 chromosome 1 predicted pro... 40 6.9
19gb|AC132455.3| Mus musculus BAC clone RP23-129K10 from chromosom... 40 6.9
20gb|AC125168.4| Mus musculus BAC clone RP24-449N2 from chromosome... 40 6.9
21gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosom... 40 6.9
22gb|AC122825.4| Mus musculus BAC clone RP23-209E13 from 10, compl... 40 6.9
23gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complet... 40 6.9
24gb|AC099414.4| Mus musculus BAC clone RP23-122C18 from 3, comple... 40 6.9
25gb|AC125277.1| Mus musculus BAC clone RP24-554P24 from 13, compl... 40 6.9
26gb|AC073269.7| Homo sapiens BAC clone RP11-436F9 from 7, complet... 40 6.9
27gb|AC104329.22| Mus musculus strain C57BL/6J clone rp23-418c12 m... 40 6.9
28emb|BX936390.7| Zebrafish DNA sequence from clone DKEY-6E2 in li... 40 6.9
29gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, comp... 40 6.9
30gb|AY346329.1| Oryza sativa (indica cultivar-group) homeodomain ... 40 6.9
31emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chr... 40 6.9
32emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N... 40 6.9
33gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, co... 40 6.9
34gb|AC010664.7| Drosophila melanogaster 3L BAC RP98-2G4 (Roswell ... 40 6.9
35gb|AC112727.4| Drosophila melanogaster 3L BAC RP98-15L14 (Roswel... 40 6.9
36gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 40 6.9
37ref|XM_694308.1| PREDICTED: Danio rerio similar to chromodomain ... 40 6.9
38gb|AC090538.6| Homo sapiens chromosome 11, clone RP5-1079I11, co... 40 6.9
39gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 6.9
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41gb|AE003483.4| Drosophila melanogaster chromosome 3L, section 17... 40 6.9
42gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
43gb|AC146753.1| Gallus gallus BAC clone CH261-4N19 from chromosom... 40 6.9
44gb|AC002295.1|AC002295 Genomic sequence from Human 9q34, complet... 40 6.9
45gb|AC000388.1|AC000388 Genomic sequence from Human 9q34, complet... 40 6.9
46gb|AC171273.1| Mus musculus BAC clone RP23-137J12 from chromosom... 40 6.9
47gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome ... 40 6.9 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 492      catgttttccaaggactttcttg 514
                |||||||||||||||||||||||
Sbjct: 35655042 catgttttccaaggactttcttg 35655064
to top
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_D06
          Length = 102239

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 492   catgttttccaaggactttcttg 514
             |||||||||||||||||||||||
Sbjct: 15656 catgttttccaaggactttcttg 15678
to top
>gb|AY946351.1| Oryza sativa microRNA miR396e precursor, gene, partial sequence
          Length = 180

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 492 catgttttccaaggactttcttg 514
           |||||||||||||||||||||||
Sbjct: 176 catgttttccaaggactttcttg 154
to top
>dbj|AK066292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067F15, full
           insert sequence
          Length = 1764

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 492 catgttttccaaggactttcttg 514
           |||||||||||||||||||||||
Sbjct: 235 catgttttccaaggactttcttg 213
to top
>gb|AC068025.12| Homo sapiens chromosome 17, clone RP11-802D6, complete sequence
          Length = 190194

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgtacatgcatgcatggagca 48
             |||||||||||||||||||||
Sbjct: 38702 tgtacatgcatgcatggagca 38722
to top
>gb|AC114792.4| Homo sapiens BAC clone RP11-658J5 from 2, complete sequence
          Length = 32363

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   actaggtaaggtagtagcatt 158
             |||||||||||||||||||||
Sbjct: 18341 actaggtaaggtagtagcatt 18321
to top
>gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, complete sequence
          Length = 185947

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 232   cacccatggaacaaaataaagctcc 256
             |||||| ||||||||||||||||||
Sbjct: 66888 cacccaaggaacaaaataaagctcc 66912
to top
>gb|AC005412.8| Homo sapiens chromosome 17, clone RP11-22N12, complete sequence
          Length = 183694

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgtacatgcatgcatggagca 48
             |||||||||||||||||||||
Sbjct: 59768 tgtacatgcatgcatggagca 59748
to top
>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence
          Length = 194853

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    ggttgcttggttggttggatt 197
              |||||||||||||||||||||
Sbjct: 101662 ggttgcttggttggttggatt 101642
to top
>emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in linkage group 2, complete
              sequence
          Length = 184244

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ggttgcttggttggttggatt 197
              |||||||||||||||||||||
Sbjct: 136605 ggttgcttggttggttggatt 136625
to top
>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete
              sequence
          Length = 209502

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ggttgcttggttggttggatt 197
              |||||||||||||||||||||
Sbjct: 149132 ggttgcttggttggttggatt 149152
to top
>gb|AC166364.2| Mus musculus BAC clone RP24-394E6 from chromosome 3, complete sequence
          Length = 227070

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tagtatagttgtacatgcat 38
              ||||||||||||||||||||
Sbjct: 206472 tagtatagttgtacatgcat 206491
to top
>gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, complete sequence
          Length = 200229

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    gcatttgcagagaaaattca 173
              ||||||||||||||||||||
Sbjct: 121646 gcatttgcagagaaaattca 121665
to top
>gb|AC091309.13| Mus musculus chromosome 17, clone RP23-127L4, complete sequence
          Length = 184755

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 176    gggttgcttggttggttggattgg 199
              |||||| |||||||||||||||||
Sbjct: 183612 gggttggttggttggttggattgg 183635
to top
>gb|AY554036.1| Oryza sativa (japonica cultivar-group) clone S1802
           homeodomain-leucine zipper Hox8-like mRNA, partial
           sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  agttgtacatgcatgcatgg 44
           ||||||||||||||||||||
Sbjct: 755 agttgtacatgcatgcatgg 774
to top
>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    cacccatggaacaaaataaa 251
              ||||||||||||||||||||
Sbjct: 149445 cacccatggaacaaaataaa 149426
to top
>gb|AC103605.8| Mus musculus chromosome 3, clone RP23-335H1, complete sequence
          Length = 222210

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tagtatagttgtacatgcat 38
              ||||||||||||||||||||
Sbjct: 184678 tagtatagttgtacatgcat 184697
to top
>ref|XM_390741.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG10565.1)
            partial mRNA
          Length = 2754

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 258  gccgatcgctgcctgccatccaac 281
            |||||||||||||||||| |||||
Sbjct: 1414 gccgatcgctgcctgccacccaac 1391
to top
>gb|AC132455.3| Mus musculus BAC clone RP23-129K10 from chromosome 17, complete
             sequence
          Length = 210538

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 176   gggttgcttggttggttggattgg 199
             |||||| |||||||||||||||||
Sbjct: 37531 gggttggttggttggttggattgg 37554
to top
>gb|AC125168.4| Mus musculus BAC clone RP24-449N2 from chromosome 3, complete sequence
          Length = 166604

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 57258 ggttgcttggttggttggat 57239
to top
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence
          Length = 151373

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatataatctggattgaaag 352
              ||||||||||||||||||||
Sbjct: 146617 aatataatctggattgaaag 146636
to top
>gb|AC122825.4| Mus musculus BAC clone RP23-209E13 from 10, complete sequence
          Length = 177676

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     gccatgcctgcttgctttct 103
              ||||||||||||||||||||
Sbjct: 137611 gccatgcctgcttgctttct 137592
to top
>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatataatctggattgaaag 352
              ||||||||||||||||||||
Sbjct: 151362 aatataatctggattgaaag 151343
to top
>gb|AC099414.4| Mus musculus BAC clone RP23-122C18 from 3, complete sequence
          Length = 203057

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 32263 ggttgcttggttggttggat 32282
to top
>gb|AC125277.1| Mus musculus BAC clone RP24-554P24 from 13, complete sequence
          Length = 141866

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   ggttgcttggttggttggattgga 200
             |||||||||||||| |||||||||
Sbjct: 81574 ggttgcttggttggctggattgga 81551
to top
>gb|AC073269.7| Homo sapiens BAC clone RP11-436F9 from 7, complete sequence
          Length = 137889

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   gttttccaaggactttcttg 514
             ||||||||||||||||||||
Sbjct: 56435 gttttccaaggactttcttg 56454
to top
>gb|AC104329.22| Mus musculus strain C57BL/6J clone rp23-418c12 map 3, complete sequence
          Length = 197096

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tagtatagttgtacatgcat 38
             ||||||||||||||||||||
Sbjct: 33029 tagtatagttgtacatgcat 33048
to top
>emb|BX936390.7| Zebrafish DNA sequence from clone DKEY-6E2 in linkage group 6, complete
              sequence
          Length = 168226

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    caatataatctggattgaaa 351
              ||||||||||||||||||||
Sbjct: 146928 caatataatctggattgaaa 146947
to top
>gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, complete sequence
          Length = 194714

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    ccatgcctgcttgctttctc 104
             ||||||||||||||||||||
Sbjct: 78271 ccatgcctgcttgctttctc 78290
to top
>gb|AY346329.1| Oryza sativa (indica cultivar-group) homeodomain leucine-zipper
            protein Hox8 mRNA, complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   agttgtacatgcatgcatgg 44
            ||||||||||||||||||||
Sbjct: 1198 agttgtacatgcatgcatgg 1217
to top
>emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chromosome 9 Contains the
             3' end of the VAV2 gene for vav 2 oncogene, the 5' end of
             the SARDH gene for sarcosine dehydrogenase (SAR, SDH,
             SARD, DMGDHL1) and a CpG island, complete sequence
          Length = 118671

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    gccatgcctgcttgctttct 103
             ||||||||||||||||||||
Sbjct: 49191 gccatgcctgcttgctttct 49172
to top
>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21
             Contains the 3' end of the HCK for hemopoietic cell
             kinase, the gene for novel protein (KIAA0255), the RPL24P1
             gene for ribosomal protein L24 pseudogene 1 and two CpG
             Islands, complete sequence
          Length = 111694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 56079 ggttgcttggttggttggat 56098
to top
>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence
          Length = 186963

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ccatgcctgcttgctttctc 104
              ||||||||||||||||||||
Sbjct: 162375 ccatgcctgcttgctttctc 162394
to top
>gb|AC010664.7| Drosophila melanogaster 3L BAC RP98-2G4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 155615

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 83513 ggttgcttggttggttggat 83532
to top
>gb|AC112727.4| Drosophila melanogaster 3L BAC RP98-15L14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 157739

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 69055 ggttgcttggttggttggat 69074
to top
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare clone OSJNBa0095C06, from Chromosome 10,
              complete sequence
          Length = 156159

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     agttgtacatgcatgcatgg 44
              ||||||||||||||||||||
Sbjct: 111329 agttgtacatgcatgcatgg 111348
to top
>ref|XM_694308.1| PREDICTED: Danio rerio similar to chromodomain helicase DNA binding
            protein 6 (LOC570787), mRNA
          Length = 5295

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  caatataatctggattgaaa 351
            ||||||||||||||||||||
Sbjct: 3262 caatataatctggattgaaa 3243
to top
>gb|AC090538.6| Homo sapiens chromosome 11, clone RP5-1079I11, complete sequence
          Length = 158201

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   atggaacaaaataaagctcc 256
             ||||||||||||||||||||
Sbjct: 35591 atggaacaaaataaagctcc 35572
to top
>gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-10f21, complete
             sequence
          Length = 97477

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   agggttgcttggttggttgg 194
             ||||||||||||||||||||
Sbjct: 80522 agggttgcttggttggttgg 80541
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       agttgtacatgcatgcatgg 44
                ||||||||||||||||||||
Sbjct: 11527336 agttgtacatgcatgcatgg 11527355
to top
>gb|AE003483.4| Drosophila melanogaster chromosome 3L, section 17 of 83 of the complete
             sequence
          Length = 175890

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggttgcttggttggttggat 196
             ||||||||||||||||||||
Sbjct: 69821 ggttgcttggttggttggat 69840
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       agttgtacatgcatgcatgg 44
                ||||||||||||||||||||
Sbjct: 11533776 agttgtacatgcatgcatgg 11533795
to top
>gb|AC146753.1| Gallus gallus BAC clone CH261-4N19 from chromosome unknown, complete
              sequence
          Length = 231376

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 472    aggaaacatggagatgcgggcatg 495
              |||||||||||||||| |||||||
Sbjct: 207879 aggaaacatggagatgtgggcatg 207856
to top
>gb|AC002295.1|AC002295 Genomic sequence from Human 9q34, complete sequence
          Length = 32626

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   gccatgcctgcttgctttct 103
            ||||||||||||||||||||
Sbjct: 2100 gccatgcctgcttgctttct 2081
to top
>gb|AC000388.1|AC000388 Genomic sequence from Human 9q34, complete sequence
          Length = 48265

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   gccatgcctgcttgctttct 103
            ||||||||||||||||||||
Sbjct: 6696 gccatgcctgcttgctttct 6715
to top
>gb|AC171273.1| Mus musculus BAC clone RP23-137J12 from chromosome 3, complete
            sequence
          Length = 234363

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   tagtatagttgtacatgcat 38
            ||||||||||||||||||||
Sbjct: 3487 tagtatagttgtacatgcat 3506
to top
>gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome 13, complete sequence
          Length = 242910

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    ggttgcttggttggttggattgga 200
              |||||||||||||| |||||||||
Sbjct: 135362 ggttgcttggttggctggattgga 135339


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,463,453
Number of Sequences: 3902068
Number of extensions: 4463453
Number of successful extensions: 118117
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117884
Number of HSP's gapped (non-prelim): 233
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top