ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23o03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 139 1e-29
2gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 139 1e-29
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
4dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
5dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
6dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
7gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 125 2e-25
8gb|AY104589.1| Zea mays PCO067801 mRNA sequence 125 2e-25
9gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete s... 58 3e-05
10gb|BT014050.1| Lycopersicon esculentum clone 133147F, mRNA sequence 56 1e-04
11ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 54 5e-04
12ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protei... 50 0.008
13emb|AJ879936.2| Capsicum chinense mRNA for putative receptor ass... 50 0.008
14ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G6331... 48 0.032
15gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.032
16ref|XM_476832.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.032
17emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 48 0.032
18emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.032
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
20dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
21dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
22dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
23gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.032
24emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 i... 46 0.13
25emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, co... 46 0.13
26emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Co... 46 0.13
27gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence 44 0.50
28gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence 44 0.50
29gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Canc... 44 0.50
30ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.0
31gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequ... 42 2.0
32dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, ... 42 2.0
33dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, ... 42 2.0
34gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.41... 42 2.0
35dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.0
36gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosom... 40 7.9
37ref|XM_849968.1| PREDICTED: Canis familiaris similar to Cylicin-... 40 7.9
38gb|BC072645.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, e... 40 7.9
39gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, comp... 40 7.9
40gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA,... 40 7.9
41gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequ... 40 7.9
42gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequ... 40 7.9
43gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequ... 40 7.9
44gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequ... 40 7.9
45dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 7.9
46gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partia... 40 7.9
47dbj|AK078532.1| Mus musculus 12 days embryo female mullerian duc... 40 7.9
48gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M... 40 7.9
49ref|NM_001025106.1| Mus musculus DNA segment, Chr 4, ERATO Doi 4... 40 7.9
50emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chr... 40 7.9 
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Plus

                                                                          
Query: 235    aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
              ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 147801 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 147860

                                                                          
Query: 295    gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
              ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 147861 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 147920

                  
Query: 355    ccaa 358
              ||||
Sbjct: 147921 ccaa 147924



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                          
Query: 436    agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
              |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 148110 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 148169

                                                                          
Query: 496    aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
              || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 148170 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 148229

                
Query: 556    at 557
              ||
Sbjct: 148230 at 148231
to top
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Plus

                                                                         
Query: 235   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
             ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 45164 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 45223

                                                                         
Query: 295   gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
             ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 45224 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 45283

                 
Query: 355   ccaa 358
             ||||
Sbjct: 45284 ccaa 45287



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                         
Query: 436   agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
             |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 45473 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 45532

                                                                         
Query: 496   aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
             || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 45533 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 45592

               
Query: 556   at 557
             ||
Sbjct: 45593 at 45594
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Plus

                                                                            
Query: 235      aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
                ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 19444452 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 19444511

                                                                            
Query: 295      gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
                ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 19444512 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 19444571

                    
Query: 355      ccaa 358
                ||||
Sbjct: 19444572 ccaa 19444575



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                            
Query: 436      agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
                |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 19444761 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 19444820

                                                                            
Query: 496      aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
                || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 19444821 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 19444880

                  
Query: 556      at 557
                ||
Sbjct: 19444881 at 19444882
to top
>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Minus

                                                                       
Query: 235 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                                                       
Query: 295 gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
           ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 772 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 713

               
Query: 355 ccaa 358
           ||||
Sbjct: 712 ccaa 709



 Score =  133 bits (67), Expect = 7e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 436 agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
           |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 631 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 572

                                                                       
Query: 496 aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
           || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 571 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 512

                                  
Query: 556 atggttccttcagtgtttgcaca 578
           ||  | |||| |||||| |||||
Sbjct: 511 attttcccttgagtgttagcaca 489
to top
>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Minus

                                                                       
Query: 235 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                                                       
Query: 295 gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
           ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 772 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 713

               
Query: 355 ccaa 358
           ||||
Sbjct: 712 ccaa 709



 Score =  133 bits (67), Expect = 7e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 436 agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
           |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 631 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 572

                                                                       
Query: 496 aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
           || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 571 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 512

                                  
Query: 556 atggttccttcagtgtttgcaca 578
           ||  | |||| |||||| |||||
Sbjct: 511 attttcccttgagtgttagcaca 489
to top
>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  139 bits (70), Expect = 1e-29
 Identities = 110/124 (88%)
 Strand = Plus / Minus

                                                                       
Query: 235 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 833 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 774

                                                                       
Query: 295 gtgtggcgctttatcaagttctcagtgtcgtagacnatgaancctgagaacaccagagct 354
           ||||||||||||||||||||||| ||||||||||  ||||| |||||||| || | ||||
Sbjct: 773 gtgtggcgctttatcaagttctctgtgtcgtagatgatgaaacctgagaaaactaaagct 714

               
Query: 355 ccaa 358
           ||||
Sbjct: 713 ccaa 710



 Score =  133 bits (67), Expect = 7e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 436 agagcagaaaacagaaatggtccaaggtaactaaattccttgcccttctttgaagcccag 495
           |||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||||
Sbjct: 632 agagcagaaaacagaattggtccaagataaccaaattctttccccttctttgaagcccag 573

                                                                       
Query: 496 aatgtgtacgcagtcagagagacaaccacagctgaggtcagtaccaaagcctgaagcaca 555
           || || |||||||||| |||| |||||||||||||||||| ||  || |||| |||||||
Sbjct: 572 aaagtatacgcagtcaaagaggcaaccacagctgaggtcaatattaatgcctcaagcaca 513

                                  
Query: 556 atggttccttcagtgtttgcaca 578
           ||  | |||| |||||| |||||
Sbjct: 512 attttcccttgagtgttagcaca 490
to top
>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score =  125 bits (63), Expect = 2e-25
 Identities = 121/141 (85%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 272
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 862 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 803

                                                                       
Query: 273 agcccagatgtactcgtcataagtgtggcgctttatcaagttctcagtgtcgtagacnat 332
            ||||||||||||||||| || ||||||||||| |||| |||||| |||||||| |  ||
Sbjct: 802 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctcggtgtcgtacaggat 743

                                
Query: 333 gaancctgagaacaccagagc 353
           ||| |||||||| ||||||||
Sbjct: 742 gaagcctgagaagaccagagc 722



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 469 aattccttgcccttctttgaagcccagaatgtgtacgcagtcagagagacaaccac 524
           |||||||||||||||||||| |||||||| |  |||||||||||||| || |||||
Sbjct: 606 aattccttgcccttctttgacgcccagaaagcatacgcagtcagagaaaccaccac 551
to top
>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score =  125 bits (63), Expect = 2e-25
 Identities = 121/141 (85%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 272
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 908 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 849

                                                                       
Query: 273 agcccagatgtactcgtcataagtgtggcgctttatcaagttctcagtgtcgtagacnat 332
            ||||||||||||||||| || ||||||||||| |||| |||||| |||||||| |  ||
Sbjct: 848 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctcggtgtcgtacaggat 789

                                
Query: 333 gaancctgagaacaccagagc 353
           ||| |||||||| ||||||||
Sbjct: 788 gaagcctgagaagaccagagc 768



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 469 aattccttgcccttctttgaagcccagaatgtgtacgcagtcagagagacaaccac 524
           |||||||||||||||||||| |||||||| |  |||||||||||||| || |||||
Sbjct: 652 aattccttgcccttctttgacgcccagaaagcatacgcagtcagagaaaccaccac 597
to top
>gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete sequence
          Length = 85986

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 457   ccaaggtaactaaattccttgcccttctttgaagcccagaa 497
             |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 72378 ccaaggtagctaaaatccttgcccttcttggaagcccagaa 72418



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                         
Query: 235   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 294
             ||||||||||| || |||||||| |||||    ||||| ||||  ||||| || ||||||
Sbjct: 71398 aggaacaggttcagaatgtcgagataaagagtgacagaggccccaatgtattcatcataa 71457

                                                
Query: 295   gtgtggcgctttatcaagttctcagtgtcgtagac 329
             || |||||||| ||||  || ||||||||||||||
Sbjct: 71458 gtatggcgcttgatcagattgtcagtgtcgtagac 71492
to top
>gb|BT014050.1| Lycopersicon esculentum clone 133147F, mRNA sequence
          Length = 1164

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 472 tccttgcccttctttgaagcccagaatgtgta 503
           |||||||||||||| |||||||||||||||||
Sbjct: 496 tccttgcccttcttagaagcccagaatgtgta 465
to top
>ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03089.4) partial mRNA
          Length = 849

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 226 aggatggtgaggaacaggttgaggatgtcgaggta 260
           ||||||| |||||||||||||| ||||||||||||
Sbjct: 818 aggatggcgaggaacaggttgatgatgtcgaggta 784
to top
>ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09310)
           partial mRNA
          Length = 846

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 235 aggaacaggttgaggatgtcgaggtaaag 263
           |||||||||||||||||||| ||||||||
Sbjct: 773 aggaacaggttgaggatgtccaggtaaag 745
to top
>emb|AJ879936.2| Capsicum chinense mRNA for putative receptor associated protein
           (ORF1)
          Length = 1037

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 273 agcccagatgtactcgtcataagtgtggcgctt 305
           ||||||||||||||| |||||||||| ||||||
Sbjct: 756 agcccagatgtactcatcataagtgtagcgctt 724
to top
>ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G63310 mRNA, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 267 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 314
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 651 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 604
to top
>gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 892

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 267 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 314
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 741 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 694
to top
>ref|XM_476832.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 477 gcccttctttgaagcccagaatgtgtacgcagtcag 512
           |||| |||||| ||||||||||||||| ||||||||
Sbjct: 619 gcccctctttgcagcccagaatgtgtaggcagtcag 584
to top
>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 267   aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 314
             ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 10307 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 10354
to top
>emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2
          Length = 75106

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 267   aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 314
             ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 55690 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 55737
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 477     gcccttctttgaagcccagaatgtgtacgcagtcag 512
               |||| |||||| ||||||||||||||| ||||||||
Sbjct: 4122063 gcccctctttgcagcccagaatgtgtaggcagtcag 4122098
to top
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1361_E02
          Length = 100168

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 477  gcccttctttgaagcccagaatgtgtacgcagtcag 512
            |||| |||||| ||||||||||||||| ||||||||
Sbjct: 5685 gcccctctttgcagcccagaatgtgtaggcagtcag 5720
to top
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534H07
          Length = 144689

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 477    gcccttctttgaagcccagaatgtgtacgcagtcag 512
              |||| |||||| ||||||||||||||| ||||||||
Sbjct: 114921 gcccctctttgcagcccagaatgtgtaggcagtcag 114956
to top
>dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H10, full
           insert sequence
          Length = 1203

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 477 gcccttctttgaagcccagaatgtgtacgcagtcag 512
           |||| |||||| ||||||||||||||| ||||||||
Sbjct: 617 gcccctctttgcagcccagaatgtgtaggcagtcag 582
to top
>gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 267 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 314
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 651 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 604
to top
>emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 in linkage group 6,
              complete sequence
          Length = 148605

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 62     ggcctcatctctggatgatggca 84
              |||||||||||||||||||||||
Sbjct: 134372 ggcctcatctctggatgatggca 134350
to top
>emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, complete sequence
          Length = 127643

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 62     ggcctcatctctggatgatggca 84
              |||||||||||||||||||||||
Sbjct: 113305 ggcctcatctctggatgatggca 113283
to top
>emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL57ZF05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 998

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 267 aacagaagcccagatgtactcgtcata 293
           ||||| |||||||||||||||||||||
Sbjct: 769 aacagcagcccagatgtactcgtcata 743
to top
>gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence
          Length = 1241

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 268 acagaagcccagatgtactcgtcataagtgtggcgctt 305
           |||| ||||||||||||||| || ||||||| ||||||
Sbjct: 680 acagcagcccagatgtactcatcgtaagtgtagcgctt 643
to top
>gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 273 agcccagatgtactcgtcataagtgt 298
           ||||||||||||||| ||||||||||
Sbjct: 729 agcccagatgtactcatcataagtgt 704
to top
>gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208808

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 55     gtactttggcctcatctctgga 76
              ||||||||||||||||||||||
Sbjct: 115436 gtactttggcctcatctctgga 115415
to top
>ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09422.1)
           partial mRNA
          Length = 831

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 235 aggaacaggttgaggatgtcgaggtaaag 263
           ||||| ||||||| |||||||||||||||
Sbjct: 791 aggaagaggttgatgatgtcgaggtaaag 763
to top
>gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequence
          Length = 39721

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   gtcgaggtaaagttcaacaga 272
             |||||||||||||||||||||
Sbjct: 32776 gtcgaggtaaagttcaacaga 32796
to top
>dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#2
          Length = 864

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 227 ggatggtgaggaacaggttga 247
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
to top
>dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#1
          Length = 864

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 227 ggatggtgaggaacaggttga 247
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
to top
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
          Length = 203591

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     tggcctcatctctggatgatg 81
              |||||||||||||||||||||
Sbjct: 154447 tggcctcatctctggatgatg 154427
to top
>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete
              sequence
          Length = 200108

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     tggcctcatctctggatgatg 81
              |||||||||||||||||||||
Sbjct: 116968 tggcctcatctctggatgatg 116988
to top
>gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosome 3, complete sequence
          Length = 160537

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   tctttgaagcccagaatgtg 501
             ||||||||||||||||||||
Sbjct: 38288 tctttgaagcccagaatgtg 38307
to top
>ref|XM_849968.1| PREDICTED: Canis familiaris similar to Cylicin-2 (Cylicin II)
           (Multiple-band polypeptide II) (LOC612232), mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 tccttgcccttctttgaagc 491
           ||||||||||||||||||||
Sbjct: 713 tccttgcccttctttgaagc 694
to top
>gb|BC072645.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed, transcript
            variant 1, mRNA (cDNA clone MGC:100008 IMAGE:30357476),
            complete cds
          Length = 4655

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cctgagaacaccagagctcc 356
            ||||||||||||||||||||
Sbjct: 3584 cctgagaacaccagagctcc 3603
to top
>gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, complete sequence
          Length = 189897

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    taaaggttggacatatgacc 158
              ||||||||||||||||||||
Sbjct: 143135 taaaggttggacatatgacc 143154
to top
>gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA, partial cds
          Length = 2584

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 aggatggtgaggaacaggttgagg 249
           |||||| |||||||||||||||||
Sbjct: 867 aggatgctgaggaacaggttgagg 890
to top
>gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequence
          Length = 41724

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 gtcgaggtaaagttcaacag 271
           ||||||||||||||||||||
Sbjct: 674 gtcgaggtaaagttcaacag 693
to top
>gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequence
          Length = 40499

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   gtcgaggtaaagttcaacag 271
             ||||||||||||||||||||
Sbjct: 33807 gtcgaggtaaagttcaacag 33788
to top
>gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequence
          Length = 39265

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gtcgaggtaaagttcaacag 271
            ||||||||||||||||||||
Sbjct: 8802 gtcgaggtaaagttcaacag 8783
to top
>gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequence
          Length = 44451

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   gtcgaggtaaagttcaacag 271
             ||||||||||||||||||||
Sbjct: 41025 gtcgaggtaaagttcaacag 41006
to top
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 473     ccttgcccttctttgaagcc 492
               ||||||||||||||||||||
Sbjct: 1654032 ccttgcccttctttgaagcc 1654051
to top
>gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  ggatggtgaggaacaggttg 246
            ||||||||||||||||||||
Sbjct: 1062 ggatggtgaggaacaggttg 1081
to top
>dbj|AK078532.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820436J17 product:hypothetical protein,
            full insert sequence
          Length = 3656

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cctgagaacaccagagctcc 356
            ||||||||||||||||||||
Sbjct: 2606 cctgagaacaccagagctcc 2625
to top
>gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M8, complete sequence
          Length = 108661

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    acatattggttgtactttgg 63
             ||||||||||||||||||||
Sbjct: 99455 acatattggttgtactttgg 99474
to top
>ref|NM_001025106.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed
            (D4Ertd429e), transcript variant 1, mRNA
          Length = 4620

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cctgagaacaccagagctcc 356
            ||||||||||||||||||||
Sbjct: 3584 cctgagaacaccagagctcc 3603
to top
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete
             sequence
          Length = 203992

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   cctgagaacaccagagctcc 356
             ||||||||||||||||||||
Sbjct: 25271 cctgagaacaccagagctcc 25252


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,465,575
Number of Sequences: 3902068
Number of extensions: 4465575
Number of successful extensions: 92056
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91908
Number of HSP's gapped (non-prelim): 147
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top