ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23o02 |
|---|---|
| Clone Library Name | barley_pub |
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 34.3 bits (77), Expect = 0.25 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 219 LPPSATHLHHRHIEPRRQHPPPTLQPW 299 L P LH + PRR+HP PT +PW Sbjct: 1267 LQPPVVQLHDSNPYPRREHPHPTARPW 1293
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 25.4 bits (54), Expect(2) = 1.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 219 LPPSATHLHHRHIEPRRQHPPP 284 LPP++ H H+ P +Q PPP Sbjct: 425 LPPASPH----HVPPLQQQPPP 442 Score = 25.0 bits (53), Expect(2) = 1.2 Identities = 12/32 (37%), Positives = 13/32 (40%) Frame = +1 Query: 76 PTPHTTAPPVRYPTPNNAVADRGQHRAFTHRH 171 PT + P RYPTP A HR H Sbjct: 371 PTSQYSPYPQRYPTPPGLPAGGSNHRTAYSTH 402
>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)| Length = 401 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/47 (42%), Positives = 22/47 (46%) Frame = +3 Query: 177 APPRC*AMPLLRPELPPSATHLHHRHIEPRRQHPPPTLQPWPRKTAA 317 APP P P LPP A HH H+ P PPP P P+ AA Sbjct: 53 APPS----PPAAPCLPPLA---HHPHLPPHPPPPPPPPPPPPQHLAA 92
>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (rElk2) (Brain-specific eag-like channel 1) (BEC1) Length = 1087 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +3 Query: 222 PPSATHLHHRHIEPRRQHPPPTLQPWP-RKTAAQVSCCPSKT 344 PP+ + L PR HPPP + PWP A+Q S P T Sbjct: 954 PPAGSVLSGTWPHPRPGHPPPLMAPWPWGPPASQSSPWPRAT 995
>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (mElk2) Length = 1087 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +3 Query: 222 PPSATHLHHRHIEPRRQHPPPTLQPWP-RKTAAQVSCCPSKT 344 PP+ + L PR HPPP + PWP A+Q S P T Sbjct: 954 PPAGSVLSGTWPHPRPGHPPPLMAPWPWGPPASQSSPWPRAT 995
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 32.0 bits (71), Expect = 1.3 Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 25/84 (29%) Frame = +3 Query: 126 RRCRPRSTQGFHP*ASHAPPRC*AMPLLRPE---------LPPSATHLH----------- 245 RR P S G P ++A P P+ P PP TH+ Sbjct: 167 RRPSPPSRHGHPPPPTYAQPP--PTPIYSPSPQVQPPPTYSPPPPTHVQPTPSPPSRGHQ 224 Query: 246 -----HRHIEPRRQHPPPTLQPWP 302 HRH P +H PPT QP P Sbjct: 225 PQPPTHRHAPPTHRHAPPTHQPSP 248
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 28.9 bits (63), Expect(2) = 1.4 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +3 Query: 222 PPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQVSCCPSKTGSRRQDASQT 374 P H HH H P PPP QP P + A Q P + A+Q+ Sbjct: 45 PQHHHHHHHHHHHP----PPPAPQPPPPRAAQQQQPPPPPLAPQAGGAAQS 91 Score = 21.6 bits (44), Expect(2) = 1.4 Identities = 9/34 (26%), Positives = 15/34 (44%) Frame = +2 Query: 440 HHHPPNVSTGAPAKRVSRWAWSSPRSRQRGAKSG 541 HH PP+ + R P +++GA +G Sbjct: 107 HHRPPSGAKAGGCCRPGELGPVGPDEKEKGAGAG 140
>CCHL_NEUCR (P14187) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 346 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 219 LPPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQVSCCPSKTGSR 353 +PP + +H++ ++ H P T P P AA S CP G++ Sbjct: 30 VPPPSCPMHNKTMDALSAHKPVTPAPEPTPAAAAPSKCPVNHGAK 74
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +1 Query: 67 GVKPTPHTTAPP-VRYPTPNNAVADRGQHRAFTHRHHTRLPAAEPCRC*GRSYRHRPPIS 243 G P +PP R P + V ++G H A RH L +++ + G YRH Sbjct: 121 GASSLPLLQSPPSTRLPPGQHLVPNQGDHSAHLSRHQQHLLSSQSHQ--GDHYRHAQASL 178 Query: 244 TTATSNP 264 T+A P Sbjct: 179 TSAQQQP 185
>MEF2A_MOUSE (Q60929) Myocyte-specific enhancer factor 2A| Length = 498 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = +3 Query: 210 RPELPPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQ------VSCCPSKTGSRRQD 362 R + PS HH H P++Q PP QP PR+ + S S GS R+D Sbjct: 409 RDRMTPSGFQHHHHH--PQQQPPPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDRED 463
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 180 PPRC*AMPLLRPELPPSATHLHHRHIEPRRQHPPP-TLQPWPRKTAAQ 320 PP +PL LPP+ ++ +H P + HP P T+ P ++A Q Sbjct: 347 PPSQHCIPLQNHGLPPAPSNAQSQHCSPIQSHPSPLTVSPNQSQSAQQ 394
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +1 Query: 70 VKPTPHTTAPPVRYPTPNNAVADRGQHRA 156 V PTP T APP PT A+ G+ RA Sbjct: 232 VLPTPQTVAPPATAPTSTTKTANLGEGRA 260
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 2.8 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Frame = +3 Query: 66 RRETNATHNGTSSEVSDAK*RRCRPRSTQGFHP*ASHAPPRC*AMPLLRPELPPSATHLH 245 RR ++A+ +G+SS S + R RS P + +PPR L PSA+ Sbjct: 346 RRRSSASLSGSSSSSSSS-----RSRSPPKKPPKRTSSPPR------KTRRLSPSASPPR 394 Query: 246 HRHIEPRRQHPP------PTLQPWPRKTAAQVSCCPSKTGSR 353 RH PP PT Q R ++VS P +T + Sbjct: 395 RRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGK 436
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 3.6 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Frame = +3 Query: 66 RRETNATHNGTSSEVSDAK*RRCRPRSTQGFHP*ASHAPPRC*AMPLLRPELPPSATHLH 245 RR ++A+ +G+SS S + R RS P + +PPR L PSA+ Sbjct: 348 RRRSSASLSGSSSSSSSS-----RSRSPPKKPPKRTSSPPR------KTRRLSPSASPPR 396 Query: 246 HRHIEPRRQHPP------PTLQPWPRKTAAQVSCCPSKTGSR 353 RH PP PT Q R ++VS P +T + Sbjct: 397 RRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGK 438
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 3.6 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Frame = +3 Query: 66 RRETNATHNGTSSEVSDAK*RRCRPRSTQGFHP*ASHAPPRC*AMPLLRPELPPSATHLH 245 RR ++A+ +G+SS S + R RS P + +PPR L PSA+ Sbjct: 348 RRRSSASLSGSSSSSSSS-----RSRSPPKKPPKRTSSPPR------KTRRLSPSASPPR 396 Query: 246 HRHIEPRRQHPP------PTLQPWPRKTAAQVSCCPSKTGSR 353 RH PP PT Q R ++VS P +T + Sbjct: 397 RRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGK 438
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 180 PPRC*AMPLLRPELPPSATHLHHRHIEPRRQHPPP-TLQPWPRKTAAQ 320 PP +PL L P+ ++ +H P + HPPP T+ P ++A Q Sbjct: 344 PPSQHCIPLPNHGLSPAPSNAQPQHCSPVQSHPPPLTVSPNQAQSAQQ 391
>RCOR2_BRARE (Q6P116) REST corepressor 2| Length = 536 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 11/62 (17%) Frame = +3 Query: 144 STQGFHP*ASHAPPRC*AMPLLRPELPPSA--------THLHHRHIEPRRQH---PPPTL 290 S G H A +PP PLLRP PPSA L R ++ R H PPP + Sbjct: 436 SASGNHSSAQSSPPLTQPPPLLRPA-PPSAPPSLLRQPPPLQTRPLQNRTPHNHPPPPLI 494 Query: 291 QP 296 +P Sbjct: 495 RP 496
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +3 Query: 210 RPELPPSATHLHHRHIEPRRQHP-PPTLQPWPRKT 311 +PE PP+ H H P+ P PPT P P+ T Sbjct: 47 KPEKPPTKGHGHKPEKPPKEHKPTPPTYTPSPKPT 81
>ACM4_MOUSE (P32211) Muscarinic acetylcholine receptor M4 (Mm4 mAChR)| Length = 479 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +3 Query: 201 PLLRPEL---PPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQVSCCPSKTGSRRQDASQ 371 PL++P + PP + PPP L P PR A + + S +GS Q+ + Sbjct: 247 PLMKPSIKKPPPGGASREELRNGKLEEAPPPALPPPPRPVADKDTSNESSSGSATQNTKE 306
>IR01_HCMVA (P09710) Hypothetical protein HKLF1 (IRL1) (TRL1)| Length = 311 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 201 PLLRPELPPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQV 323 P +P P ++T HH H PR H TL P P +A V Sbjct: 230 PRRKPPHPATSTASHHPHASPRSDH---TLFPVPSTPSATV 267
>SPTA3_MOUSE (Q9D9T6) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) (mTSARG1) Length = 193 Score = 29.3 bits (64), Expect = 8.1 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Frame = +3 Query: 45 RSQNEQSRRETNATHNGTSSEVSDAK*RRCRPRSTQGFHP*ASHAPPRC*--AMPLLRPE 218 + + SRR N+ TSS+ S +S PP C A P +P+ Sbjct: 5 KKKKSDSRRRRNSISPQTSSDSSQQP---------------SSETPPSCPEPASPPSKPQ 49 Query: 219 LPPSATHLHHRHIEPRRQHPPPTLQPWPRKTAAQVSCCP 335 +T H + EP+ Q P P P K A+ P Sbjct: 50 PCQESTTPHQVNPEPKPQQHTPQPLPPPEKPASSPFLVP 88
>FOXC2_HUMAN (Q99958) Forkhead box protein C2 (Forkhead-related protein FKHL14)| (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14) Length = 501 Score = 29.3 bits (64), Expect = 8.1 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 237 HLHHRHIEPRRQHPPPTLQPWP 302 H HH H P+ PPP QP P Sbjct: 389 HQHHGHHHPQAPPPPPAPQPQP 410
>VGLH_EHV4 (P24430) Glycoprotein H precursor| Length = 855 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +1 Query: 31 RSKAFAHRMNKVGVKPTPHTTAPPVRYPTPNNAVADRG---QHRAFTHRHHT 177 RSK A + N VGV +P T+P V NN + D G QH + H T Sbjct: 164 RSKTVATKGNPVGVVLSPPRTSPDV-----NNTIRDDGTPKQHLSIIDEHTT 210
>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 76 PTPHTTAPPVRYPTPNNAVADRGQHRAFTHRHH 174 PT +TT P++ P + V+D+ H H HH Sbjct: 100 PTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHH 132
>HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 76 PTPHTTAPPVRYPTPNNAVADRGQHRAFTHRHH 174 PT +TT P++ P + V+D+ H H HH Sbjct: 100 PTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHH 132
>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 76 PTPHTTAPPVRYPTPNNAVADRGQHRAFTHRHH 174 PT +TT P++ P + V+D+ H H HH Sbjct: 100 PTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHH 132 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,425,194 Number of Sequences: 219361 Number of extensions: 1772823 Number of successful extensions: 6312 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6245 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
