>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 415     accacgccgcaccgcatcttca 436
               ||||||||||||||||||||||
Sbjct: 3177404 accacgccgcaccgcatcttca 3177383

>emb|X94597.1|MTMPT83GN M.tuberculosis mpt83 gene
          Length = 1498

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 415 accacgccgcaccgcatcttca 436
           ||||||||||||||||||||||
Sbjct: 93  accacgccgcaccgcatcttca 72

>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 415   accacgccgcaccgcatcttca 436
             ||||||||||||||||||||||
Sbjct: 64211 accacgccgcaccgcatcttca 64190

>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 415   accacgccgcaccgcatcttca 436
             ||||||||||||||||||||||
Sbjct: 14764 accacgccgcaccgcatcttca 14743

>ref|XM_501931.1| Yarrowia lipolytica CLIB122, YALI0C17061g predicted mRNA
          Length = 1803

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 434 tcaccccaccatcatcctcca 454
           |||||||||||||||||||||
Sbjct: 229 tcaccccaccatcatcctcca 209

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 434     tcaccccaccatcatcctcca 454
               |||||||||||||||||||||
Sbjct: 2413212 tcaccccaccatcatcctcca 2413192

>ref|XM_466314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2316

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 cccatctccaccaccgccac 254
           ||||||||||||||||||||
Sbjct: 317 cccatctccaccaccgccac 298

>gb|AC124588.4| Mus musculus BAC clone RP23-133F15 from chromosome 1, complete sequence
          Length = 141995

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   catcttcaccccaccatcat 448
             ||||||||||||||||||||
Sbjct: 11127 catcttcaccccaccatcat 11108

>ref|XM_661204.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20079)
            partial mRNA
          Length = 3441

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  gccacccatctccaccaccg 250
            ||||||||||||||||||||
Sbjct: 1668 gccacccatctccaccaccg 1649

>emb|AL513320.30| Human DNA sequence from clone RP11-46F15 on chromosome 1 Contains the
             5' end of the EGFL3 gene for EGF-like-domain multiple 3, a
             novel gene, the gene for a novel protein (FLJ39108,
             FLJ21756 and FLJ21811), the 3' end of the WDR8 gene for WD
             repeat domain 8 and five CpG islands, complete sequence
          Length = 130141

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   caccccaccatcatcctcca 454
             ||||||||||||||||||||
Sbjct: 88756 caccccaccatcatcctcca 88775

>emb|AL359085.14| Human DNA sequence from clone RP11-113J24 on chromosome 13 Contains the
              5' end of a novel gene, a novel gene (FLJ14624 FLJ31847),
              the 5' end of a novel gene (FLJ22153), COX5B (cytochrome c
              oxidase subunit Vb) pseudogene and two CpG islands,
              complete sequence
          Length = 152794

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    cagcatccaccgccaaccct 289
              ||||||||||||||||||||
Sbjct: 118733 cagcatccaccgccaaccct 118752

>emb|BX294091.1|NCB14A21 Neurospora crassa DNA linkage group V BAC contig B14A21
          Length = 113206

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    caacggcacctccagtgagg 108
             ||||||||||||||||||||
Sbjct: 20574 caacggcacctccagtgagg 20555

>emb|AL136078.1|SPAC1002 S.pombe chromosome I cosmid c1002
          Length = 40272

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  aatctgggcatggagctccc 553
            ||||||||||||||||||||
Sbjct: 8742 aatctgggcatggagctccc 8723

>gb|AC067733.22| Homo sapiens 3 BAC RP11-148K3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170124

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    cagcatccaccgccaaccct 289
              ||||||||||||||||||||
Sbjct: 161447 cagcatccaccgccaaccct 161428

>gb|AC093854.2| Homo sapiens BAC clone RP11-503F14 from 4, complete sequence
          Length = 167663

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   ccacccatctccaccaccgccaca 255
             ||||||||||||||||| ||||||
Sbjct: 72777 ccacccatctccaccactgccaca 72754

>dbj|AK157646.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830229J19 product:hypothetical
           Histidine-rich region profile containing protein, full
           insert sequence
          Length = 1604

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 429 catcttcaccccaccatcat 448
           ||||||||||||||||||||
Sbjct: 593 catcttcaccccaccatcat 612

>ref|XM_626304.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_690),
            partial mRNA
          Length = 4086

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  gccacccatctccaccaccg 250
            ||||||||||||||||||||
Sbjct: 1683 gccacccatctccaccaccg 1664

>gb|S54369.1| phbCAB operon: phbA=beta-ketothiolase,
           phbC=poly(3-hydroxyalkanoate) synthase [Thiocystis
           violacea, Genomic, 5 genes, 7339 nt]
          Length = 7339

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 214 cggagctaccgccatcggccaccc 237
           |||||||| |||||||||||||||
Sbjct: 704 cggagctatcgccatcggccaccc 681

>ref|NM_001018926.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPAC1002.05c), partial mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 534 aatctgggcatggagctccc 553
           ||||||||||||||||||||
Sbjct: 421 aatctgggcatggagctccc 440

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 235      cccatctccaccaccgccac 254
                ||||||||||||||||||||
Sbjct: 21631503 cccatctccaccaccgccac 21631522

>gb|M93661.1|RATNOTCHX Rattus norvegicus NOTCH2 mRNA, complete cds
          Length = 8287

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  cggatctagacgccaggatg 363
            ||||||||||||||||||||
Sbjct: 6314 cggatctagacgccaggatg 6333

>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    cccatctccaccaccgccac 254
              ||||||||||||||||||||
Sbjct: 120453 cccatctccaccaccgccac 120472

>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0025F02
          Length = 156545

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cccatctccaccaccgccac 254
             ||||||||||||||||||||
Sbjct: 12900 cccatctccaccaccgccac 12919

>gb|AC157824.1| Mus musculus BAC clone RP23-265E4 from 1, complete sequence
          Length = 153577

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   catcttcaccccaccatcat 448
             ||||||||||||||||||||
Sbjct: 76659 catcttcaccccaccatcat 76678

>emb|BX294010.1|NCB24G20 Neurospora crassa DNA linkage group V BAC clone B24G20
          Length = 69195

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    caacggcacctccagtgagg 108
             ||||||||||||||||||||
Sbjct: 68989 caacggcacctccagtgagg 68970

>ref|NM_024358.1| Rattus norvegicus notch gene homolog 2 (Drosophila) (Notch2), mRNA
          Length = 8287

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  cggatctagacgccaggatg 363
            ||||||||||||||||||||
Sbjct: 6314 cggatctagacgccaggatg 6333

>gb|L01113.1|TSSPHBAC Thiocystis violacea beta-ketothiolase and PHA synthase (phbA and
           phbC) genes, complete cds
          Length = 7339

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 214 cggagctaccgccatcggccaccc 237
           |||||||| |||||||||||||||
Sbjct: 704 cggagctatcgccatcggccaccc 681

>emb|AJ315672.1|CPA315672 Cryptosporidium parvum microsatellites CP17a and CP17b
          Length = 854

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 gccacccatctccaccaccg 250
           ||||||||||||||||||||
Sbjct: 672 gccacccatctccaccaccg 653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,910,862
Number of Sequences: 3902068
Number of extensions: 3910862
Number of successful extensions: 71190
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71051
Number of HSP's gapped (non-prelim): 139
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)