ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRL25_ARATH (O50052) Putative disease resistance protein At4g19050 29 8.1
2HY6H_HYONI (P24397) Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (H... 29 8.1
3PUIB_WHEAT (Q10464) Puroindoline-B precursor 29 8.1

>DRL25_ARATH (O50052) Putative disease resistance protein At4g19050|
          Length = 1181

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 326 FQSSKGISLPPVAHLTGSFNRTSTVGVVGCF---NCTRLLQLHKSVSTTSLARIDMC 487
           F  +K I LP + HL  S N  ST+ ++      NCTRL +L +    T+L  +D C
Sbjct: 607 FSETKIIRLP-IFHLKDSTNDFSTMPILTRLLLRNCTRLKRLPQLRPLTNLQILDAC 662



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>HY6H_HYONI (P24397) Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine|
           6-beta-hydroxylase)
          Length = 344

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 286 HLNEGLGLRFLYKFRGFKSRVSTFELEPYMPCLPDPSASHGNWRSFDVQRLTV 128
           ++ EGLGL+  Y F    S++       Y PC PDPS++ G+   +D   +T+
Sbjct: 175 YICEGLGLKLGY-FDNELSQIQMMLTNYYPPC-PDPSSTLGSGGHYDGNLITL 225



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>PUIB_WHEAT (Q10464) Puroindoline-B precursor|
          Length = 148

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 476 SWPTKWWKHSCAVE 435
           +WPTKWWK  C  E
Sbjct: 67  TWPTKWWKGGCEHE 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,317,323
Number of Sequences: 219361
Number of extensions: 1529839
Number of successful extensions: 3070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3070
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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