Clone Name | rbasd24c20 |
---|---|
Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 53.9 bits (128), Expect = 1e-07 Identities = 23/31 (74%), Positives = 25/31 (80%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASIFSLLWVR+DPF R+ GP I CGINC Sbjct: 1035 LASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/31 (67%), Positives = 23/31 (74%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASIFSLLWVR+DPF + GP CGINC Sbjct: 996 LASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 47.4 bits (111), Expect = 1e-05 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASIFSL+WVR+DPF + GP ++ CG++C Sbjct: 1019 LASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASI +LLWVRV+PF + GP ++ CG+NC Sbjct: 1053 LASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1054 LASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1039 LASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 39.3 bits (90), Expect = 0.003 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = -3 Query: 281 LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189 LASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1057 LASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 281 LASIFSLLWVRVDPF 237 LASIFSLLWVR++PF Sbjct: 1037 LASIFSLLWVRINPF 1051
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 281 LASIFSLLWVRVDPF 237 LASIFSLLWVR++PF Sbjct: 1050 LASIFSLLWVRINPF 1064
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 30.4 bits (67), Expect = 1.2 Identities = 11/15 (73%), Positives = 15/15 (100%) Frame = -3 Query: 281 LASIFSLLWVRVDPF 237 LAS+FSL+WVR++PF Sbjct: 953 LASVFSLVWVRINPF 967
>NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (Nucleolar| protein family A member 2) Length = 153 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 274 QSSPCCGFVLIHSGXVSLAPISKPVAS--TARKMEXCRDRKYNSDRLTTRGARE 119 Q+ CCG H V+L PI++P+AS RK+ C +K + RG +E Sbjct: 14 QADACCGERTYHELLVNLNPIAQPLASRRLTRKLYKC-IKKAVKQKQIRRGVKE 66
>PATL1_ARATH (Q56WK6) Patellin-1| Length = 573 Score = 28.9 bits (63), Expect = 3.5 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -2 Query: 171 VETENITVID*QPVEPEKIYVWG 103 V E + V + +PVEPE++ +WG Sbjct: 224 VVVETVAVAEAEPVEPEEVSIWG 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,898,102 Number of Sequences: 219361 Number of extensions: 573847 Number of successful extensions: 1055 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1042 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1051 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)