ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [U... 54 1e-07
2CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [U... 49 3e-06
3CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U... 47 1e-05
4CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [U... 42 4e-04
5CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U... 40 0.002
6CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [U... 40 0.002
7CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub... 39 0.003
8CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub... 32 0.42
9CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U... 32 0.42
10CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [U... 30 1.2
11NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (... 30 1.2
12PATL1_ARATH (Q56WK6) Patellin-1 29 3.5

>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
            protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASIFSLLWVR+DPF  R+ GP I  CGINC
Sbjct: 1035 LASIFSLLWVRIDPFTSRVTGPDILECGINC 1065



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>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3)
          Length = 1026

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASIFSLLWVR+DPF  +  GP    CGINC
Sbjct: 996  LASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026



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>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5)
          Length = 1049

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASIFSL+WVR+DPF  +  GP ++ CG++C
Sbjct: 1019 LASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049



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>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASI +LLWVRV+PF  +  GP ++ CG+NC
Sbjct: 1053 LASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082



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>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
            (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASI +LLWVRV+PF  +  GP ++ CG++C
Sbjct: 1054 LASILTLLWVRVNPFVAK-GGPILEICGLDC 1083



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>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-5)
          Length = 1069

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASI +LLWVRV+PF  +  GP ++ CG++C
Sbjct: 1039 LASILTLLWVRVNPFVAK-GGPILEICGLDC 1068



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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPFRXRLAGPXIQTCGINC 189
            LASI +LLWVRV+PF  +  GP ++ CG++C
Sbjct: 1057 LASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086



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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPF 237
            LASIFSLLWVR++PF
Sbjct: 1037 LASIFSLLWVRINPF 1051



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>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
            (AtRSW1)
          Length = 1081

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -3

Query: 281  LASIFSLLWVRVDPF 237
            LASIFSLLWVR++PF
Sbjct: 1050 LASIFSLLWVRINPF 1064



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>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-8) (Irregular xylem protein 1)
           (AtIRX1)
          Length = 985

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/15 (73%), Positives = 15/15 (100%)
 Frame = -3

Query: 281 LASIFSLLWVRVDPF 237
           LAS+FSL+WVR++PF
Sbjct: 953 LASVFSLVWVRINPF 967



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>NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (Nucleolar|
           protein family A member 2)
          Length = 153

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 274 QSSPCCGFVLIHSGXVSLAPISKPVAS--TARKMEXCRDRKYNSDRLTTRGARE 119
           Q+  CCG    H   V+L PI++P+AS    RK+  C  +K    +   RG +E
Sbjct: 14  QADACCGERTYHELLVNLNPIAQPLASRRLTRKLYKC-IKKAVKQKQIRRGVKE 66



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>PATL1_ARATH (Q56WK6) Patellin-1|
          Length = 573

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 171 VETENITVID*QPVEPEKIYVWG 103
           V  E + V + +PVEPE++ +WG
Sbjct: 224 VVVETVAVAEAEPVEPEEVSIWG 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,898,102
Number of Sequences: 219361
Number of extensions: 573847
Number of successful extensions: 1055
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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