ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1841_MYCTU (Q50593) Hypothetical protein Rv1841c/MT1889 30 5.8
2TLC1_ARATH (Q39002) Chloroplast ADP,ATP carrier protein 1, chlor... 30 5.8
3VGLM_HANTV (P08668) Envelope polyprotein precursor (M polyprotei... 29 9.9

>Y1841_MYCTU (Q50593) Hypothetical protein Rv1841c/MT1889|
          Length = 345

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 108 FGFSSLPPASMYSVCMVHCVQADLLLGSQLPK 13
           FG S +PPA ++++ +   V   +LLG  +PK
Sbjct: 90  FGLSGVPPALLHTLSLAIVVALHVLLGEMVPK 121



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>TLC1_ARATH (Q39002) Chloroplast ADP,ATP carrier protein 1, chloroplast|
           precursor (ADP/ATP translocase 1) (Adenine nucleotide
           translocase 1)
          Length = 624

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 274 LATSLRTVLQLRFMLPLAVARPWATCL 194
           LA  L T L  RFM P+A+ R W+ CL
Sbjct: 214 LADKLLTTLGPRFMGPIAILRIWSFCL 240



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>VGLM_HANTV (P08668) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 225 WRWLVPGLLVWRKVMLMMLLDER*IGLYLCYPCGENWKVFGFSSLPPASM 76
           W+WLV   LVW  + L  + D + I        GEN  V G+  LPP  +
Sbjct: 4   WKWLVMASLVWPVLTLRNVYDMK-IECPHTVSFGEN-SVIGYVELPPVPL 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,018,064
Number of Sequences: 219361
Number of extensions: 1178901
Number of successful extensions: 3128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3123
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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