ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY980554.1| Uncultured bacterium clone X476 16S ribosomal RNA... 38 5.5
2gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosom... 38 5.5
3gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complet... 38 5.5
4gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 38 5.5
5gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 38 5.5

>gb|AY980554.1| Uncultured bacterium clone X476 16S ribosomal RNA gene, partial
           sequence
          Length = 1357

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  aactggatgatgtggagac 43
           |||||||||||||||||||
Sbjct: 969 aactggatgatgtggagac 987



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>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete
             sequence
          Length = 151373

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    aggctgattataatttata 84
             |||||||||||||||||||
Sbjct: 97925 aggctgattataatttata 97907



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>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     aggctgattataatttata 84
              |||||||||||||||||||
Sbjct: 200058 aggctgattataatttata 200076



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    ggctgattataatttataa 85
             |||||||||||||||||||
Sbjct: 23112 ggctgattataatttataa 23130



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     ggctgattataatttataa 85
              |||||||||||||||||||
Sbjct: 112234 ggctgattataatttataa 112216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 858,771
Number of Sequences: 3902068
Number of extensions: 858771
Number of successful extensions: 61869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61863
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 98
effective length of database: 17,151,101,840
effective search space: 1680807980320
effective search space used: 1680807980320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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