ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NODD1_BRAEL (P50323) Nodulation protein D I 35 0.092
2ATS2_HUMAN (O95450) ADAMTS-2 precursor (EC 3.4.24.14) (A disinte... 30 1.7
3NODD_BRASP (P04682) Nodulation protein D 30 2.3
4ATS2_BOVIN (P79331) ADAMTS-2 precursor (EC 3.4.24.14) (A disinte... 30 2.3
5NODD2_RHITR (P32008) Nodulation protein D 2 30 2.9
6CP51_CANGA (P50859) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (... 29 5.0
7CP51_YEAST (P10614) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (... 29 5.0
8TOP3_YEAST (P13099) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoi... 28 6.6
9YCR3_YEAST (P25351) Hypothetical transport protein YCR023C 28 8.6
10NOD11_BRAJA (Q45264) Nodulation protein D I 28 8.6

>NODD1_BRAEL (P50323) Nodulation protein D I|
          Length = 314

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = -1

Query: 213 RAFILRR*NSLRRCHXXHGNARRPHLEHWKLLLHLRENGPIDAKRKWPVIPVLFFWLGWV 34
           R     + NS+       G A RP+LE W LL H  +       + + +IP + F  G +
Sbjct: 183 RPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTGRI 242

Query: 33  GGNPCRLXXFF 1
           G  P RL   F
Sbjct: 243 GTMPLRLARHF 253



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>ATS2_HUMAN (O95450) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 2) (ADAM-TS
            2) (ADAM-TS2) (Procollagen I/II amino
            propeptide-processing enzyme) (Procollagen I
            N-proteinase) (PC I-NP) (Procollagen N-en
          Length = 1211

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
 Frame = -2

Query: 302  WQECTSNQAWNEQQLINTIRQFLKHKRVHEGHSF*DAETRCAVAXXXMGMLEDPIWNTGS 123
            W  C+       Q      R+ L HK VH G     ++ +             P+W TG 
Sbjct: 863  WSPCSKPCGGGSQFTKYGCRRRLDHKMVHRGFCAALSKPKAIRRACNPQECSQPVWVTGE 922

Query: 122  ---CSYICGKMDRLMRNV 78
               CS  CG+    +R+V
Sbjct: 923  WEPCSQTCGRTGMQVRSV 940



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>NODD_BRASP (P04682) Nodulation protein D|
          Length = 338

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -1

Query: 213 RAFILRR*NSLRRCHXXHGNARRPHLEHWKLLLHLRENGPIDAKRKWPVIPVLFFWLGWV 34
           R     + NS+       G A RP+LE W LL H  +       + + +IP +      +
Sbjct: 183 RPLTFEKYNSMGHVTAQFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILLDTSRI 242

Query: 33  GGNPCRLXXFF 1
           G  P RL   F
Sbjct: 243 GTMPLRLARHF 253



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>ATS2_BOVIN (P79331) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 2) (ADAM-TS
            2) (ADAM-TS2) (Procollagen I/II amino
            propeptide-processing enzyme) (Procollagen I
            N-proteinase) (PC I-NP) (Procollagen N-en
          Length = 1205

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = -2

Query: 302  WQECTSNQAWNEQQLINTIRQFLKHKRVHEGHSF*DAETRCAVAXXXMGMLE--DPIWNT 129
            W  C+       Q      R+ L HK VH G  F D+ ++           E   P+W T
Sbjct: 857  WSPCSKPCGGGSQFTKYGCRRRLDHKMVHRG--FCDSVSKPKAIRRTCNPQECSQPVWVT 914

Query: 128  GS---CSYICGKMDRLMRNV 78
            G    CS  CG+    +R+V
Sbjct: 915  GEWEPCSRSCGRTGMQVRSV 934



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>NODD2_RHITR (P32008) Nodulation protein D 2|
          Length = 314

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -1

Query: 207 FILRR*NSLRRCHXXHGNARRPHLEHWKLLLHLRENGPIDAKRKWPVIPVLFFWLGWVGG 28
           F   R  S+       GN RRP +E W LL H  +       + + +IP +      +G 
Sbjct: 184 FTFERYMSMGHVAVKFGNTRRPTIEEWYLLEHGLKRRIEVVVQGFSMIPPMLSGTERIGT 243

Query: 27  NPCRLXXFF 1
            P RL   F
Sbjct: 244 MPLRLAQHF 252



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>CP51_CANGA (P50859) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)|
           (Sterol 14-alpha-demethylase) (Lanosterol 14-alpha
           demethylase) (P450-14DM)
          Length = 533

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 129 WKLLLHLRENGPIDAKRKWPVIPVLFFWLGWVG 31
           W+LL  LR++ P          P++F+W+ WVG
Sbjct: 46  WQLLYSLRKDRP----------PLVFYWIPWVG 68



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>CP51_YEAST (P10614) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)|
           (Sterol 14-alpha demethylase) (Lanosterol 14-alpha
           demethylase) (P450-14DM)
          Length = 530

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 129 WKLLLHLRENGPIDAKRKWPVIPVLFFWLGWVG 31
           W+LL  LR++ P          P++F+W+ WVG
Sbjct: 45  WQLLYSLRKDRP----------PLVFYWIPWVG 67



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>TOP3_YEAST (P13099) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)|
          Length = 656

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 146 LRAFPWXXWQRRSEFQRLRMNAL 214
           L  +PW  W+   +  RL MNAL
Sbjct: 490 LDVYPWARWETTKQLPRLEMNAL 512



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>YCR3_YEAST (P25351) Hypothetical transport protein YCR023C|
          Length = 611

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 398 KLEGQFEYQAFVSVSQKPDLKKILRNILSQICWQECTS 285
           +L GQ    A+ S SQ  DL+   R+ LS +  Q CT+
Sbjct: 574 ELHGQGSEDAYNSQSQSSDLRMAHRSSLSSLSNQRCTT 611



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>NOD11_BRAJA (Q45264) Nodulation protein D I|
          Length = 314

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 159 GNARRPHLEHWKLLLHLRENGPIDAKRKWPVIPVLFFWLGWVGGNPCRLXXFF 1
           G A RP+LE W LL H          + + +IP L      +G  P RL   F
Sbjct: 201 GRALRPNLEEWFLLEHGLRRRIEVVVQGFSLIPPLLLDTSRIGTMPLRLARHF 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,180,036
Number of Sequences: 219361
Number of extensions: 1188571
Number of successful extensions: 3113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3113
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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