ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23n13 |
|---|---|
| Clone Library Name | barley_pub |
>ATS2_HUMAN (O95450) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and| metalloproteinase with thrombospondin motifs 2) (ADAM-TS 2) (ADAM-TS2) (Procollagen I/II amino propeptide-processing enzyme) (Procollagen I N-proteinase) (PC I-NP) (Procollagen N-en Length = 1211 Score = 31.2 bits (69), Expect = 0.62 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Frame = -3 Query: 270 WQECTSNQAWNEQQLINTIRQFLKHKRVHEGHSF*DAETRCAVAMISMGMLEDPIWNTGS 91 W C+ Q R+ L HK VH G ++ + + P+W TG Sbjct: 863 WSPCSKPCGGGSQFTKYGCRRRLDHKMVHRGFCAALSKPKAIRRACNPQECSQPVWVTGE 922 Query: 90 ---CSYICGKMDRLMRNV 46 CS CG+ +R+V Sbjct: 923 WEPCSQTCGRTGMQVRSV 940
>ATS2_BOVIN (P79331) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and| metalloproteinase with thrombospondin motifs 2) (ADAM-TS 2) (ADAM-TS2) (Procollagen I/II amino propeptide-processing enzyme) (Procollagen I N-proteinase) (PC I-NP) (Procollagen N-en Length = 1205 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Frame = -3 Query: 270 WQECTSNQAWNEQQLINTIRQFLKHKRVHEGHSF*DAETRCAVAMISMGMLEDPIWNTGS 91 W C+ Q R+ L HK VH G ++ + + P+W TG Sbjct: 857 WSPCSKPCGGGSQFTKYGCRRRLDHKMVHRGFCDSVSKPKAIRRTCNPQECSQPVWVTGE 916 Query: 90 ---CSYICGKMDRLMRNV 46 CS CG+ +R+V Sbjct: 917 WEPCSRSCGRTGMQVRSV 934
>DRL9_ARATH (Q8W3K0) Probable disease resistance protein At1g58602| Length = 1138 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = -3 Query: 393 TTLANQVYQK--LEGQFEYQAFVSVSQKPDLKKILRNILSQI 274 TTLA QV+ + +F+ A+VSVSQ LK + +NIL + Sbjct: 196 TTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDL 237
>R13L4_ARATH (Q38834) Putative disease resistance RPP13-like protein 4| Length = 852 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 2/42 (4%) Frame = -3 Query: 393 TTLANQVY--QKLEGQFEYQAFVSVSQKPDLKKILRNILSQI 274 TT+A +V+ +++E +FE + +VSVSQ ++I+R+IL + Sbjct: 196 TTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNL 237
>SIG11_HUMAN (Q96RL6) Sialic acid-binding Ig-like lectin 11 precursor| (Siglec-11) (Sialic acid-binding lectin 11) Length = 686 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Frame = -1 Query: 182 KGIHSETLKLAAPLP*FPWECSK------TPSGTLEVAPTSAGKWTD 60 +G+H A+P P W + + G+ EV P+SAG W + Sbjct: 457 EGLHCSCSSQASPAPSLRWWLGEELLEGNSSQGSFEVTPSSAGPWAN 503
>TOP3_YEAST (P13099) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)| Length = 656 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 114 LRAFPWKSWQRRSEFQRLRMNAL 182 L +PW W+ + RL MNAL Sbjct: 490 LDVYPWARWETTKQLPRLEMNAL 512
>METC_ARATH (P53780) Cystathionine beta-lyase, chloroplast precursor (EC| 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) Length = 464 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Frame = +1 Query: 94 SSVPDGVFEHSHGNHGNGAAS-FSVSE*MPFMNPFMLEELSY--------CVDELLLIPC 246 + +PD H H + GA S FS ++ ++E Y V L+ +PC Sbjct: 358 AGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPC 417 Query: 247 LIAGALLPADLRK 285 ++ A +PA++R+ Sbjct: 418 FMSHASIPAEVRE 430
>YCR3_YEAST (P25351) Hypothetical transport protein YCR023C| Length = 611 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -3 Query: 366 KLEGQFEYQAFVSVSQKPDLKKILRNILSQICWQECTS 253 +L GQ A+ S SQ DL+ R+ LS + Q CT+ Sbjct: 574 ELHGQGSEDAYNSQSQSSDLRMAHRSSLSSLSNQRCTT 611
>ZFP62_MOUSE (Q8C827) Zinc finger protein 62 homolog (Zfp-62) (ZT3)| Length = 914 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = -3 Query: 219 TIRQFLKHKRVHEGHSF*DAETRCAVAMISMG----MLEDPIWNTGSCSYICGKMDRLMR 52 T R L HK +H G D +C S +++ + +TG Y C + + R Sbjct: 310 TCRTLLNHKSIHFG----DKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFR 365 Query: 51 NVNGL 37 N +GL Sbjct: 366 NSSGL 370
>ZFP62_HUMAN (Q8NB50) Zinc finger protein 62 homolog (Zfp-62)| Length = 694 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = -3 Query: 219 TIRQFLKHKRVHEGHSF*DAETRCAVAMISMG----MLEDPIWNTGSCSYICGKMDRLMR 52 T R L HK +H G D +C S +++ + +TG Y C + + R Sbjct: 114 TCRTLLNHKSIHFG----DKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFR 169 Query: 51 NVNGL 37 N +GL Sbjct: 170 NSSGL 174
>YJS1_YEAST (P46987) Hypothetical 69.5 kDa protein in SWE1-ATP12 intergenic| region Length = 611 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 330 SVSQKPDLKKILRNILSQICWQECTSNQAWNEQQLINTIRQ 208 SVS DLK L+ S I QE T + ++ LI+ IRQ Sbjct: 569 SVSSAMDLKHSLQKCSSTIMPQELTQDVIGSKSDLISNIRQ 609
>DRL8_ARATH (Q8W3K3) Putative disease resistance protein At1g58400| Length = 910 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -3 Query: 393 TTLANQVY--QKLEGQFEYQAFVSVSQKPDLKKILRNILSQICWQE 262 TTLA QV+ + ++ QF+ A+V VSQ+ K + + IL + +E Sbjct: 198 TTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSRE 243
>DRL7_ARATH (Q8W474) Probable disease resistance protein At1g58390| Length = 613 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -3 Query: 393 TTLANQVY--QKLEGQFEYQAFVSVSQKPDLKKILRNILSQICWQE 262 TTLA QV+ + ++ QF+ A+V VSQ+ K + + IL + +E Sbjct: 197 TTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSRE 242
>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3| Length = 574 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 102 SRWGLRAFPWKSWQRRSEFQR 164 S+WG+ A P K+W+R+ R Sbjct: 6 SKWGVEASPGKAWERKRSLLR 26
>SYE1_BARQU (Q6FZP6) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA| ligase 1) (GluRS 1) Length = 459 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 136 DFHGNARRPHLEHWKLLLHLRENGPIDAKR 47 +F R+PH W+ LL EN P+ KR Sbjct: 133 EFESQGRKPH---WRFLLPNFENNPLQTKR 159
>SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 929 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = +1 Query: 1 QPIPTKRTELELQAIYVSH-----QSVHFPADVGATSSVPDGVFEHSHGNHGNG 147 +P+PT EL +Y SH ADVGAT PD + H +G Sbjct: 445 EPVPTD----ELIELYDSHGIQPGMVADIAADVGATVDAPDDFYSLVAARHDDG 494
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +3 Query: 3 THPNQKNRTGITGHLRFASIGPFSRRCRSN 92 +H Q TG+T HL S+ P+ R N Sbjct: 249 SHLPQVQSTGVTSHLNSTSVDPYDRHLLQN 278
>TYR3_CAEEL (Q19673) Putative tyrosinase-like protein tyr-3 precursor| Length = 683 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = -3 Query: 264 ECTSNQAWNEQQLINTIRQFLKHKRVHEGHSF*DAETRCAVAMISMGMLEDPIWNTGSCS 85 EC N + + RQ + ++E S D T CA+ S ++P+W + +C Sbjct: 477 ECQKNPVYMNVWCKASCRQCTPNYNINEECS--DRHTNCAMWSRSGECNKNPLWMSENCR 534 Query: 84 YICGKMDR 61 C K R Sbjct: 535 SSCQKCGR 542 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,765,524 Number of Sequences: 219361 Number of extensions: 1193808 Number of successful extensions: 3250 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3250 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
