ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24c13 |
|---|---|
| Clone Library Name | barley_pub |
>ST7R_ARATH (Q9LDU6) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Dwarf5 protein) Length = 432 Score = 93.2 bits (230), Expect = 5e-19 Identities = 40/75 (53%), Positives = 50/75 (66%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RHF P S+ WTVPALF +F+ YFYVIFLT+ RC +KYGKYWK Sbjct: 358 GLARHFHYVPEILSAFFWTVPALFDNFLAYFYVIFLTLLLFDRAKRDDDRCRSKYGKYWK 417 Query: 394 MYCNRVPYRVVPGIY 350 +YC +V YR++PGIY Sbjct: 418 LYCEKVKYRIIPGIY 432
>DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC 1.3.1.21)| (7-DHC reductase) (Sterol delta-7-reductase) Length = 447 Score = 75.9 bits (185), Expect = 8e-14 Identities = 35/75 (46%), Positives = 44/75 (58%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G SRH + S + + F+HF+PYFY +++TI RCS KYGKYWK Sbjct: 373 GVSRHMNYTGDIILSTAYCLACGFSHFIPYFYCVYMTILLVTRCLRDEQRCSRKYGKYWK 432 Query: 394 MYCNRVPYRVVPGIY 350 MY RVPYR +PGIY Sbjct: 433 MYTKRVPYRFIPGIY 447
>LBR_HUMAN (Q14739) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (LMN2R) Length = 615 Score = 68.9 bits (167), Expect = 1e-11 Identities = 29/75 (38%), Positives = 40/75 (53%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 GF RH + ++ W++P F H +PYFY+I+ T+ C KYG W+ Sbjct: 541 GFVRHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWE 600 Query: 394 MYCNRVPYRVVPGIY 350 YC RVPYR+ P IY Sbjct: 601 KYCQRVPYRIFPYIY 615
>LBR_RAT (O08984) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (NBP60) Length = 620 Score = 68.2 bits (165), Expect = 2e-11 Identities = 30/75 (40%), Positives = 40/75 (53%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 GF RH + ++ W++P F H +PYFYVI+ T +C KYG W+ Sbjct: 546 GFVRHPNYLGDLIMALAWSLPCGFNHILPYFYVIYFTALLIHREARDEHQCRRKYGLAWE 605 Query: 394 MYCNRVPYRVVPGIY 350 YC RVPYR+ P IY Sbjct: 606 KYCQRVPYRIFPYIY 620
>LBR_MOUSE (Q3U9G9) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 626 Score = 67.8 bits (164), Expect = 2e-11 Identities = 29/75 (38%), Positives = 40/75 (53%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 GF RH + ++ W++P F H +PYFY+I+ T +C KYG W+ Sbjct: 552 GFVRHPNYLGDLIMALAWSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWE 611 Query: 394 MYCNRVPYRVVPGIY 350 YC RVPYR+ P IY Sbjct: 612 KYCQRVPYRIFPYIY 626
>LBR_PONPY (Q5R7H4) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 615 Score = 67.0 bits (162), Expect = 4e-11 Identities = 28/75 (37%), Positives = 40/75 (53%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 GF+RH + ++ W++ F H +PYFY+I+ T+ C KYG W+ Sbjct: 541 GFARHPNYLGDLIMALAWSLACGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWE 600 Query: 394 MYCNRVPYRVVPGIY 350 YC RVPYR+ P IY Sbjct: 601 KYCQRVPYRIFPYIY 615
>DHCR7_XENLA (Q7ZXH1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/75 (38%), Positives = 44/75 (58%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RH + S+ + + F H +PYFY I++TI RCS+KYGK WK Sbjct: 399 GVARHLNYTGDLMGSLAYCLACGFDHLLPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWK 458 Query: 394 MYCNRVPYRVVPGIY 350 +Y + VPYR++PG++ Sbjct: 459 LYTSAVPYRLLPGLF 473
>DHCR7_XENTR (Q6P4M0) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 63.5 bits (153), Expect = 4e-10 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RH + S+ + + F H +PYFY ++TI RCS+KYGK WK Sbjct: 399 GVARHLNYTGDLMGSLAYCLACGFDHLLPYFYFTYMTILLVHRCIRDEHRCSSKYGKDWK 458 Query: 394 MYCNRVPYRVVPGIY 350 +Y + VPYR++PG++ Sbjct: 459 LYTDAVPYRLLPGLF 473
>ERG24_HUMAN (O76062) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (Delta14-SR) (Transmembrane 7 superfamily member 2) (Another new gene 1 protein) (Putative sterol reductase SR-1) Length = 418 Score = 61.6 bits (148), Expect = 2e-09 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = -3 Query: 532 SIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGI 353 ++ W++P +H +PYFY+++ T +C KYG W+ YC RVPYR++P I Sbjct: 358 ALAWSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLAWQEYCRRVPYRIMPYI 417 Query: 352 Y 350 Y Sbjct: 418 Y 418
>DHCR7_RAT (Q9Z2Z8) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RHF+ S+ + + H +PYFY+I++TI RC+ KYG+ W+ Sbjct: 397 GVARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWE 456 Query: 394 MYCNRVPYRVVPGIY 350 Y VPYR++PGI+ Sbjct: 457 RYVAAVPYRLLPGIF 471
>DHCR7_MOUSE (O88455) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RHF+ S+ + + H +PYFY+I++TI RC+ KYG+ W+ Sbjct: 397 GVARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWE 456 Query: 394 MYCNRVPYRVVPGIY 350 Y VPYR++PGI+ Sbjct: 457 RYTAAVPYRLLPGIF 471
>DHCR7_BOVIN (Q5E9J5) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 475 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RHF+ S+ + + H +PYFY+IF+ I RC+ KYG+ W+ Sbjct: 401 GVARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIFMAILLTHRCLRDEHRCANKYGRDWE 460 Query: 394 MYCNRVPYRVVPGIY 350 Y VPYR++PGI+ Sbjct: 461 HYTAAVPYRLLPGIF 475
>DHCR7_HUMAN (Q9UBM7) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Putative sterol reductase SR-2) Length = 475 Score = 58.5 bits (140), Expect = 1e-08 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RHF+ S+ + + H +PYFY+I++ I RC++KYG+ W+ Sbjct: 401 GVARHFNYVGDLMGSLAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWE 460 Query: 394 MYCNRVPYRVVPGIY 350 Y VPYR++PGI+ Sbjct: 461 RYTAAVPYRLLPGIF 475
>LBR_CHICK (P23913) Lamin-B receptor| Length = 637 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/68 (36%), Positives = 33/68 (48%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 GF RH + ++ W++P F H +PYFYVI+ C KYG W+ Sbjct: 534 GFVRHPNYLGDIIMALAWSLPCGFNHILPYFYVIYFICLLVHREARDEHHCKKKYGLAWE 593 Query: 394 MYCNRVPY 371 YC RVPY Sbjct: 594 RYCQRVPY 601
>DHCR7_BRARE (Q7SXF1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 478 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/75 (34%), Positives = 39/75 (52%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RH + S+ + + H +PYFY+I++TI RCS KYGK W+ Sbjct: 404 GVARHMNYTGDLMGSLAYCLACGGNHLLPYFYIIYMTILLVHRCIRDEHRCSNKYGKDWE 463 Query: 394 MYCNRVPYRVVPGIY 350 Y V YR++P I+ Sbjct: 464 RYTAAVSYRLLPNIF 478
>ERG24_SCHPO (Q09195) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 424 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/75 (32%), Positives = 37/75 (49%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RH + + W +PA F +PYFYV + + +C KYG+ W+ Sbjct: 350 GMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLLVHRNARDDHKCRVKYGEDWE 409 Query: 394 MYCNRVPYRVVPGIY 350 YC V YR++P +Y Sbjct: 410 KYCKAVKYRIIPYVY 424
>ERG24_ASCIM (P78575) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 430 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = -3 Query: 493 MPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 350 + YFYVI+ I +C KYGK W YC V +R++PGIY Sbjct: 383 LTYFYVIYFGILLLHRDRRDEAKCREKYGKDWDRYCKVVKWRIIPGIY 430
>ERG4_YEAST (P25340) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 473 Score = 45.8 bits (107), Expect = 9e-05 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = -3 Query: 532 SIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGI 353 S+ W + F P+F+ +F + +C KYGK W YC PY +P + Sbjct: 413 SLVWALSCGFNSVFPWFFPVFFLVVLIHRAFRDQAKCKRKYGKDWDEYCKHCPYVFIPYV 472 Query: 352 Y 350 + Sbjct: 473 F 473
>ERG24_SEPLY (O13597) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 512 Score = 45.1 bits (105), Expect = 1e-04 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -3 Query: 487 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 350 YFY+++ I +C KYG +W+ YC V +R++PG+Y Sbjct: 467 YFYMLYFAILLIHRERRDEAKCRRKYGAHWEKYCQIVRWRILPGVY 512
>ERG24_ARATH (Q9LDR4) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (FACKEL protein) Length = 369 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -3 Query: 574 GFSRHFSLCPRDPSSIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWK 395 G +RH + ++ +++P + +PYFY I+L I RC+ KY + W Sbjct: 295 GIARHCNYLGDLMLALSFSLPCGISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWA 354 Query: 394 MYCNRVPYRVVPGIY 350 Y VP+R++P +Y Sbjct: 355 EYLRLVPWRILPYVY 369
>ERG24_NEUCR (P38670) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 490 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -3 Query: 487 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 350 YFY+++ I +CS KYG W+ Y V +R+VPGIY Sbjct: 445 YFYILYFAILLIHRDLRDDEKCSKKYGDDWEKYKKLVKWRIVPGIY 490
>ERG24_YEAST (P32462) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 438 Score = 43.1 bits (100), Expect = 6e-04 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -3 Query: 532 SIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGI 353 S+ W + F + Y+Y ++ +C KYG+ W+ Y +VPY+++P + Sbjct: 378 SLSWCLATWFQTPLTYYYSLYFATLLLHRQQRDEHKCRLKYGENWEEYERKVPYKIIPYV 437 Query: 352 Y 350 Y Sbjct: 438 Y 438
>ERG24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 485 Score = 42.7 bits (99), Expect = 7e-04 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -3 Query: 487 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 350 YFY+++ I +C KYG+ W+ Y V YR++PGIY Sbjct: 440 YFYILYFAILLIHRERRDDDKCHRKYGEDWEKYRKIVRYRIIPGIY 485
>STS1_SCHPO (P36209) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 453 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = -3 Query: 532 SIXWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGI 353 S+ W + F +PYFY F + +C KYG + YC PY +P I Sbjct: 393 SLSWALITGFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKYGADFDEYCRICPYLFIPYI 452 Query: 352 Y 350 + Sbjct: 453 F 453
>CML1_RAT (O35786) Chemokine receptor-like 1 (G-protein coupled receptor DEZ)| (G-protein coupled chemoattractant-like receptor) Length = 371 Score = 29.3 bits (64), Expect = 8.4 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +2 Query: 266 IVPGH*SGRESHQQLTCFLLVSCRV----HHSVNTRNNPVRYSVAVHLPVLAVLC*ASII 433 +V GH S SH ++TCF S HS + R +PV YS V + V LC + Sbjct: 173 LVFGHVS--TSHGKITCFNNFSLAAPEPFSHSTHPRTDPVGYSRHVAVTVTRFLC--GFL 228 Query: 434 IPL 442 IP+ Sbjct: 229 IPV 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,365,616 Number of Sequences: 219361 Number of extensions: 1149262 Number of successful extensions: 2673 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2672 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
