ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24c13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465527.1| Oryza sativa (japonica cultivar-group), mRNA 167 5e-38
2dbj|AK100199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 5e-38
3gb|BT019183.1| Zea mays clone Contig854.F mRNA sequence 159 1e-35
4gb|AY105566.1| Zea mays PCO110886 mRNA sequence 159 1e-35
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
6dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
7dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8gb|AF417293.1| Castanea sativa putative delta-7-sterol reductase... 58 3e-05
9gb|AY465906.1| Tropaeolum majus sterol delta-7 reductase mRNA, c... 50 0.008
10gb|M27821.1|MZENAR Maize NADH:nitrate reductase (NR) mRNA, 3' end 46 0.13
11gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence... 44 0.50
12gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequen... 44 0.50
13gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gen... 44 0.50
14gb|AC129552.20| Mus musculus chromosome 5, clone RP24-122N24, co... 42 2.0
15gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, c... 42 2.0
16gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map... 42 2.0
17gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, comp... 42 2.0
18gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, com... 42 2.0
19gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, c... 42 2.0
20gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromo... 42 2.0
21gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, com... 42 2.0
22gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, c... 42 2.0
23gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, c... 42 2.0
24emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chr... 42 2.0
25gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 40 7.8
26gb|AY700050.1| Morus alba sterol delta-7 reductase (Dwf5) mRNA, ... 40 7.8
27gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete se... 40 7.8
28emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in... 40 7.8
29gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 40 7.8
30gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 7.8
31gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosom... 40 7.8
32emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chr... 40 7.8
33gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 40 7.8
34emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 40 7.8
35gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta ... 40 7.8
36gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta ... 40 7.8
37gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, comp... 40 7.8
38gb|AC158239.2| Mus musculus BAC clone RP23-48A24 from chromosome... 40 7.8
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
40dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
41gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-... 40 7.8
42gb|AC003997.1|AC003997 Mouse BAC mbac20 from 14D1-D2 (T-Cell Rec... 40 7.8
43gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, compl... 40 7.8 
>ref|XM_465527.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1913

 Score =  167 bits (84), Expect = 5e-38
 Identities = 196/231 (84%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
            ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| |||||
Sbjct: 1504 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 1445

                                                                        
Query: 407  gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 466
            ||| ||||||| ||||||||  ||||||||||| || |||||||| | ||| |  |||||
Sbjct: 1444 gccatactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggt 1385

                                                                        
Query: 467  cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtcca-na 525
            |||||| |||||||||||||| ||||  ||||||   |||||||||||||| |||||  |
Sbjct: 1384 cagaaagatcacatagaagtacggcaggaaatgatcaaaaagagctggaactgtccagaa 1325

                                                               
Query: 526  aaatgctgctaggatctctggggcatagtgaaaagtgacgagaaaagcccc 576
            ||| || | ||| ||||||||  ||||||||||| |||||||| |||||||
Sbjct: 1324 aaaagcagatagaatctctggaacatagtgaaaa-tgacgagacaagcccc 1275
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>dbj|AK100199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E06, full
            insert sequence
          Length = 1911

 Score =  167 bits (84), Expect = 5e-38
 Identities = 196/231 (84%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
            ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| |||||
Sbjct: 1502 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 1443

                                                                        
Query: 407  gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 466
            ||| ||||||| ||||||||  ||||||||||| || |||||||| | ||| |  |||||
Sbjct: 1442 gccatactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggt 1383

                                                                        
Query: 467  cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtcca-na 525
            |||||| |||||||||||||| ||||  ||||||   |||||||||||||| |||||  |
Sbjct: 1382 cagaaagatcacatagaagtacggcaggaaatgatcaaaaagagctggaactgtccagaa 1323

                                                               
Query: 526  aaatgctgctaggatctctggggcatagtgaaaagtgacgagaaaagcccc 576
            ||| || | ||| ||||||||  ||||||||||| |||||||| |||||||
Sbjct: 1322 aaaagcagatagaatctctggaacatagtgaaaa-tgacgagacaagcccc 1273
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>gb|BT019183.1| Zea mays clone Contig854.F mRNA sequence
          Length = 916

 Score =  159 bits (80), Expect = 1e-35
 Identities = 195/231 (84%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 347 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
           ||||||||| |||||||  || ||||| |||||| |||||||||| ||||||||||||||
Sbjct: 539 tcagtaaatgccaggaatgactctgtatggtactttgttgcagtaaatcttccagtactt 480

                                                                       
Query: 407 gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 466
            |||||||||| |||||| |  |||||||||||||| |||||||||| || ||  || ||
Sbjct: 479 cccgtactttgatgagcaccggtcatcatccctctttgctcggtcaaacaataatatagt 420

                                                                       
Query: 467 cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtcca-na 525
           |||||| ||||| ||||||||||| |  || ||| |||||||||||||||| |||||  |
Sbjct: 419 cagaaagatcacgtagaagtatggtaggaagtgattgaaaagagctggaacagtccagaa 360

                                                              
Query: 526 aaatgctgctaggatctctggggcatagtgaaaagtgacgagaaaagcccc 576
           |||||| | ||| ||||||||| |||||||  |||||||| || |||||||
Sbjct: 359 aaatgcagatagtatctctgggacatagtg-gaagtgacgtgacaagcccc 310
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>gb|AY105566.1| Zea mays PCO110886 mRNA sequence
          Length = 1863

 Score =  159 bits (80), Expect = 1e-35
 Identities = 195/231 (84%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
            ||||||||| |||||||  || ||||| |||||| |||||||||| ||||||||||||||
Sbjct: 1455 tcagtaaatgccaggaatgactctgtatggtactttgttgcagtaaatcttccagtactt 1396

                                                                        
Query: 407  gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 466
             |||||||||| |||||| |  |||||||||||||| |||||||||| || ||  || ||
Sbjct: 1395 cccgtactttgatgagcaccggtcatcatccctctttgctcggtcaaacaataatatagt 1336

                                                                        
Query: 467  cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtcca-na 525
            |||||| ||||| ||||||||||| |  || ||| |||||||||||||||| |||||  |
Sbjct: 1335 cagaaagatcacgtagaagtatggtaggaagtgattgaaaagagctggaacagtccagaa 1276

                                                               
Query: 526  aaatgctgctaggatctctggggcatagtgaaaagtgacgagaaaagcccc 576
            |||||| | ||| ||||||||| |||||||  |||||||| || |||||||
Sbjct: 1275 aaatgcagatagtatctctgggacatagtg-gaagtgacgtgacaagcccc 1226
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 347      tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
                ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| |||||
Sbjct: 15741493 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 15741552

                   
Query: 407      gcc 409
                |||
Sbjct: 15741553 gcc 15741555



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 411      tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 470
                ||||||| ||||||||  ||||||||||| || |||||||| | ||| |  |||||||||
Sbjct: 15742152 tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 15742211

                                      
Query: 471      aatatcacatagaagtatggca 492
                || |||||||||||||| ||||
Sbjct: 15742212 aagatcacatagaagtacggca 15742233



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 63/74 (85%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                            
Query: 504      aaaagagctggaacggtcca-naaaatgctgctaggatctctggggcatagtgaaaagtg 562
                |||||||||||||| |||||  |||| || | ||| ||||||||  ||||||||||| ||
Sbjct: 15742320 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaa-tg 15742378

                              
Query: 563      acgagaaaagcccc 576
                |||||| |||||||
Sbjct: 15742379 acgagacaagcccc 15742392
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>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0035A24
          Length = 176446

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 347    tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 406
              ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| |||||
Sbjct: 150180 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 150239

                 
Query: 407    gcc 409
              |||
Sbjct: 150240 gcc 150242



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                          
Query: 411    tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 470
              ||||||| ||||||||  ||||||||||| || |||||||| | ||| |  |||||||||
Sbjct: 150839 tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 150898

                                    
Query: 471    aatatcacatagaagtatggca 492
              || |||||||||||||| ||||
Sbjct: 150899 aagatcacatagaagtacggca 150920



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 63/74 (85%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                          
Query: 504    aaaagagctggaacggtcca-naaaatgctgctaggatctctggggcatagtgaaaagtg 562
              |||||||||||||| |||||  |||| || | ||| ||||||||  ||||||||||| ||
Sbjct: 151007 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaa-tg 151065

                            
Query: 563    acgagaaaagcccc 576
              |||||| |||||||
Sbjct: 151066 acgagacaagcccc 151079
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>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1342_D02
          Length = 125460

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 411 tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 470
           ||||||| ||||||||  ||||||||||| || |||||||| | ||| |  |||||||||
Sbjct: 92  tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 151

                                 
Query: 471 aatatcacatagaagtatggca 492
           || |||||||||||||| ||||
Sbjct: 152 aagatcacatagaagtacggca 173



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 63/74 (85%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                       
Query: 504 aaaagagctggaacggtcca-naaaatgctgctaggatctctggggcatagtgaaaagtg 562
           |||||||||||||| |||||  |||| || | ||| ||||||||  ||||||||||| ||
Sbjct: 260 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaa-tg 318

                         
Query: 563 acgagaaaagcccc 576
           |||||| |||||||
Sbjct: 319 acgagacaagcccc 332
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>gb|AF417293.1| Castanea sativa putative delta-7-sterol reductase mRNA, partial cds
          Length = 538

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 423 catctatcatcatccctcttcgctcggtcaagcagtagaatggtcagaaatatcacatag 482
           |||| |||||||||||| || ||||||||||  || || || || |||||||||||||||
Sbjct: 128 catcgatcatcatccctttttgctcggtcaaaaagaaggatagtaagaaatatcacatag 69

                                                    
Query: 483 aagtatggcataaaatgagtgaaaagagctggaacggtcca 523
           ||| | || |  |||||| | || |||||||| ||||||||
Sbjct: 68  aagaaaggtaggaaatgattaaagagagctgggacggtcca 28
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>gb|AY465906.1| Tropaeolum majus sterol delta-7 reductase mRNA, complete cds
          Length = 1604

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 103/129 (79%)
 Strand = Plus / Minus

                                                                        
Query: 395  cttccagtacttgccgtactttgttgagcatctatcatcatccctcttcgctcggtcaag 454
            |||||||||||| || ||||| | |  |||||  |||||||| || || |||||||||| 
Sbjct: 1296 cttccagtactttccatacttggatctgcatcggtcatcatctcttttggctcggtcaaa 1237

                                                                        
Query: 455  cagtagaatggtcagaaatatcacatagaagtatggcataaaatgagtgaaaagagctgg 514
             || || ||||| || || | ||| |||||||| || | || |||| |||||||||||||
Sbjct: 1236 gagaaggatggtaaggaacaccacgtagaagtacggaagaacatgattgaaaagagctgg 1177

                     
Query: 515  aacggtcca 523
             ||||||||
Sbjct: 1176 gacggtcca 1168
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>gb|M27821.1|MZENAR Maize NADH:nitrate reductase (NR) mRNA, 3' end
          Length = 2126

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 398 ccagtacttgccgtactttgttg 420
           |||||||||||||||||||||||
Sbjct: 411 ccagtacttgccgtactttgttg 389
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>gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence; and maturase-like
            protein gene, partial cds; chloroplast genes for
            chloroplast products
          Length = 2034

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 142  aaaatcatgtgaaaaagcttgataca 167
            |||||||| |||||||||||||||||
Sbjct: 1821 aaaatcatatgaaaaagcttgataca 1846
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>gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequence; and
            maturase-like sequence
          Length = 2443

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 142  aaaatcatgtgaaaaagcttgataca 167
            |||||||| |||||||||||||||||
Sbjct: 1807 aaaatcatatgaaaaagcttgataca 1832
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>gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gene, partial sequence;
            chloroplast
          Length = 1981

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 142  aaaatcatgtgaaaaagcttgataca 167
            |||||||| |||||||||||||||||
Sbjct: 1768 aaaatcatatgaaaaagcttgataca 1793
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>gb|AC129552.20| Mus musculus chromosome 5, clone RP24-122N24, complete sequence
          Length = 153520

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 492  ataaaatgagtgaaaagagctggaa 516
            ||||||||| |||||||||||||||
Sbjct: 2701 ataaaatgaatgaaaagagctggaa 2725
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>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 382   tgttgcagtacatcttccagt 402
             |||||||||||||||||||||
Sbjct: 40499 tgttgcagtacatcttccagt 40519
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>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence
          Length = 235509

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     taaaaacctagagaacatagctctc 97
              |||||||||||| ||||||||||||
Sbjct: 172389 taaaaacctagaaaacatagctctc 172413
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>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence
          Length = 214509

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 73    taaaaacctagagaacatagctctc 97
             |||||||||||| ||||||||||||
Sbjct: 10877 taaaaacctagaaaacatagctctc 10901
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>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence
          Length = 154928

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aagagtagttcattttcattt 126
             |||||||||||||||||||||
Sbjct: 99239 aagagtagttcattttcattt 99219
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>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 382    tgttgcagtacatcttccagt 402
              |||||||||||||||||||||
Sbjct: 102897 tgttgcagtacatcttccagt 102877
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>gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromosome 15, complete
            sequence
          Length = 150565

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 382  tgttgcagtacatcttccagt 402
            |||||||||||||||||||||
Sbjct: 7016 tgttgcagtacatcttccagt 6996
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>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence
          Length = 185594

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    aagagtagttcattttcattt 126
              |||||||||||||||||||||
Sbjct: 139078 aagagtagttcattttcattt 139098
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>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence
          Length = 174192

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   tgttgcagtacatcttccagt 402
             |||||||||||||||||||||
Sbjct: 64285 tgttgcagtacatcttccagt 64265
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>gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, complete sequence
          Length = 178059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 382  tgttgcagtacatcttccagt 402
            |||||||||||||||||||||
Sbjct: 8091 tgttgcagtacatcttccagt 8111
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>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete
              sequence
          Length = 185591

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    aagagtagttcattttcattt 126
              |||||||||||||||||||||
Sbjct: 139075 aagagtagttcattttcattt 139095
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>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   cacatagaagtatggcataa 495
             ||||||||||||||||||||
Sbjct: 94605 cacatagaagtatggcataa 94586
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>gb|AY700050.1| Morus alba sterol delta-7 reductase (Dwf5) mRNA, partial cds
          Length = 864

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 502 tgaaaagagctggaacggtccanaaaa 528
           |||||||||||||||| ||||| ||||
Sbjct: 793 tgaaaagagctggaacagtccagaaaa 767
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>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence
          Length = 366816

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 493    taaaatgagtgaaaagagctggaa 516
              ||||||||||||||| ||||||||
Sbjct: 239741 taaaatgagtgaaaatagctggaa 239764
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>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2,
             complete sequence
          Length = 124301

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    catcaaagtgaaactagaga 43
             ||||||||||||||||||||
Sbjct: 31501 catcaaagtgaaactagaga 31520
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>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   cacatagaagtatggcataa 495
             ||||||||||||||||||||
Sbjct: 65721 cacatagaagtatggcataa 65740
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>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3
            of 3 of the complete sequence
          Length = 209806

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 491  cataaaatgagtgaaaagag 510
            ||||||||||||||||||||
Sbjct: 5507 cataaaatgagtgaaaagag 5526
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>gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosome 10, complete
             sequence
          Length = 243006

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   ctttgttgagcatctatcat 432
             ||||||||||||||||||||
Sbjct: 59877 ctttgttgagcatctatcat 59896
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>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the
             3' end of the ITGBL1 gene for integrin, beta-like 1 (with
             EGF-like repeat domains), a novel gene, the 3' end of the
             FGF14 gene for fibroblast growth factor 14 and a
             high-mobility group box 1 (HMGB1) pseudogene, complete
             sequence
          Length = 147607

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   cataaaatgagtgaaaagag 510
             ||||||||||||||||||||
Sbjct: 57272 cataaaatgagtgaaaagag 57291
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   cacatagaagtatggcataa 495
             ||||||||||||||||||||
Sbjct: 34163 cacatagaagtatggcataa 34182
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>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaaaataaaaacctagagaa 87
             ||||||||||||||||||||
Sbjct: 41464 aaaaataaaaacctagagaa 41445
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>gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta locus  section 3 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gaacaaccctgtaaggtact 380
              ||||||||||||||||||||
Sbjct: 243004 gaacaaccctgtaaggtact 242985
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>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus  section 2 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gaacaaccctgtaaggtact 380
              ||||||||||||||||||||
Sbjct: 204838 gaacaaccctgtaaggtact 204819
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>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence
          Length = 128703

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 343  ccattcagtaaataccaggaacaa 366
            |||| |||||||||||||||||||
Sbjct: 9692 ccatgcagtaaataccaggaacaa 9715
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>gb|AC158239.2| Mus musculus BAC clone RP23-48A24 from chromosome 10, complete sequence
          Length = 256496

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   ctttgttgagcatctatcat 432
             ||||||||||||||||||||
Sbjct: 28354 ctttgttgagcatctatcat 28335
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 107      agagtagttcattttcattt 126
                ||||||||||||||||||||
Sbjct: 16985920 agagtagttcattttcattt 16985901
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0488D02
          Length = 154537

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    agagtagttcattttcattt 126
              ||||||||||||||||||||
Sbjct: 115733 agagtagttcattttcattt 115714
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>gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-D2 (T-Cell Receptor Alpha
              Locus), complete sequence
          Length = 132090

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gaacaaccctgtaaggtact 380
              ||||||||||||||||||||
Sbjct: 111955 gaacaaccctgtaaggtact 111936
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>gb|AC003997.1|AC003997 Mouse BAC mbac20 from 14D1-D2 (T-Cell Receptor Alpha Locus), complete
             sequence
          Length = 122176

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gaacaaccctgtaaggtact 380
             ||||||||||||||||||||
Sbjct: 88417 gaacaaccctgtaaggtact 88398
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>gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, complete sequence
          Length = 217336

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   ctttgttgagcatctatcat 432
             ||||||||||||||||||||
Sbjct: 88257 ctttgttgagcatctatcat 88238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,661,772
Number of Sequences: 3902068
Number of extensions: 5661772
Number of successful extensions: 90237
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90096
Number of HSP's gapped (non-prelim): 141
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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