Clone Name | rbasd24c12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 108/128 (84%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 292 tctagacgaagtagtcttggcgcacgacggtgatgaaatcgcagggaagtgagtcttcct 351 ||||||| ||||||||||| |||| ||| || || | || |||||||||||||| |||| Sbjct: 37883195 tctagacaaagtagtcttgacgcatgacagttataatgtcacagggaagtgagtcgtcct 37883136 Query: 352 ctttttgcttccctacatcgccgccgtttccttgtatgtgccagtatatctttggaggca 411 ||||||| || |||| ||| ||| |||||||| ||||||||||||||||||||||| | Sbjct: 37883135 ctttttgtttacctatatccccg---tttccttggatgtgccagtatatctttggaggaa 37883079 Query: 412 ggggtgca 419 | |||||| Sbjct: 37883078 gaggtgca 37883071 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 451 tttgatcaagttctctagtggaatggagcacaataataccggcaagaactgtgagaaacc 510 |||||||| |||||||||| || || ||||||| | |||| ||||||||||| ||||| | Sbjct: 37882963 tttgatcaggttctctagtagagtgtagcacaagagtaccagcaagaactgtcagaaatc 37882904 Query: 511 cacaagtctcggaggcaataatgcttgcgctct 543 | ||| ||||||| ||||| ||||||| |||| Sbjct: 37882903 cgcaaatctcggatgcaattttgcttgcactct 37882871
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 91.7 bits (46), Expect = 2e-15 Identities = 108/128 (84%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 292 tctagacgaagtagtcttggcgcacgacggtgatgaaatcgcagggaagtgagtcttcct 351 ||||||| ||||||||||| |||| ||| || || | || |||||||||||||| |||| Sbjct: 104551 tctagacaaagtagtcttgacgcatgacagttataatgtcacagggaagtgagtcgtcct 104492 Query: 352 ctttttgcttccctacatcgccgccgtttccttgtatgtgccagtatatctttggaggca 411 ||||||| || |||| ||| ||| |||||||| ||||||||||||||||||||||| | Sbjct: 104491 ctttttgtttacctatatccccg---tttccttggatgtgccagtatatctttggaggaa 104435 Query: 412 ggggtgca 419 | |||||| Sbjct: 104434 gaggtgca 104427 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 451 tttgatcaagttctctagtggaatggagcacaataataccggcaagaactgtgagaaacc 510 |||||||| |||||||||| || || ||||||| | |||| ||||||||||| ||||| | Sbjct: 104319 tttgatcaggttctctagtagagtgtagcacaagagtaccagcaagaactgtcagaaatc 104260 Query: 511 cacaagtctcggaggcaataatgcttgcgctct 543 | ||| ||||||| ||||| ||||||| |||| Sbjct: 104259 cgcaaatctcggatgcaattttgcttgcactct 104227
>dbj|AK103484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130L04, full insert sequence Length = 1683 Score = 91.7 bits (46), Expect = 2e-15 Identities = 108/128 (84%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 292 tctagacgaagtagtcttggcgcacgacggtgatgaaatcgcagggaagtgagtcttcct 351 ||||||| ||||||||||| |||| ||| || || | || |||||||||||||| |||| Sbjct: 1265 tctagacaaagtagtcttgacgcatgacagttataatgtcacagggaagtgagtcgtcct 1206 Query: 352 ctttttgcttccctacatcgccgccgtttccttgtatgtgccagtatatctttggaggca 411 ||||||| || |||| ||| ||| |||||||| ||||||||||||||||||||||| | Sbjct: 1205 ctttttgtttacctatatccccg---tttccttggatgtgccagtatatctttggaggaa 1149 Query: 412 ggggtgca 419 | |||||| Sbjct: 1148 gaggtgca 1141 Score = 73.8 bits (37), Expect = 5e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 423 agagatgcataaaggtctggagacagattttgatcaagttctctagtggaatggagcaca 482 |||| |||||| ||||||| || ||| |||||||| |||||||||| || || |||||| Sbjct: 1149 agaggtgcatacaggtctgccgaaagagtttgatcaggttctctagtagagtgtagcaca 1090 Query: 483 ataataccggcaagaactgtgagaaacccacaagtctcggaggcaataatgcttgcgctc 542 | | |||| ||||||||||| ||||| || ||| ||||||| ||||| ||||||| ||| Sbjct: 1089 agagtaccagcaagaactgtcagaaatccgcaaatctcggatgcaattttgcttgcactc 1030 Query: 543 t 543 | Sbjct: 1029 t 1029
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 91.7 bits (46), Expect = 2e-15 Identities = 108/128 (84%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 292 tctagacgaagtagtcttggcgcacgacggtgatgaaatcgcagggaagtgagtcttcct 351 ||||||| ||||||||||| |||| ||| || || | || |||||||||||||| |||| Sbjct: 142443 tctagacaaagtagtcttgacgcatgacagttataatgtcacagggaagtgagtcgtcct 142384 Query: 352 ctttttgcttccctacatcgccgccgtttccttgtatgtgccagtatatctttggaggca 411 ||||||| || |||| ||| ||| |||||||| ||||||||||||||||||||||| | Sbjct: 142383 ctttttgtttacctatatccccg---tttccttggatgtgccagtatatctttggaggaa 142327 Query: 412 ggggtgca 419 | |||||| Sbjct: 142326 gaggtgca 142319 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 451 tttgatcaagttctctagtggaatggagcacaataataccggcaagaactgtgagaaacc 510 |||||||| |||||||||| || || ||||||| | |||| ||||||||||| ||||| | Sbjct: 142211 tttgatcaggttctctagtagagtgtagcacaagagtaccagcaagaactgtcagaaatc 142152 Query: 511 cacaagtctcggaggcaataatgcttgcgctct 543 | ||| ||||||| ||||| ||||||| |||| Sbjct: 142151 cgcaaatctcggatgcaattttgcttgcactct 142119
>ref|XM_463503.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 969 Score = 89.7 bits (45), Expect = 9e-15 Identities = 107/127 (84%), Gaps = 3/127 (2%) Strand = Plus / Minus Query: 293 ctagacgaagtagtcttggcgcacgacggtgatgaaatcgcagggaagtgagtcttcctc 352 |||||| ||||||||||| |||| ||| || || | || |||||||||||||| ||||| Sbjct: 969 ctagacaaagtagtcttgacgcatgacagttataatgtcacagggaagtgagtcgtcctc 910 Query: 353 tttttgcttccctacatcgccgccgtttccttgtatgtgccagtatatctttggaggcag 412 |||||| || |||| ||| ||| |||||||| ||||||||||||||||||||||| || Sbjct: 909 tttttgtttacctatatccccg---tttccttggatgtgccagtatatctttggaggaag 853 Query: 413 gggtgca 419 |||||| Sbjct: 852 aggtgca 846 Score = 73.8 bits (37), Expect = 5e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 423 agagatgcataaaggtctggagacagattttgatcaagttctctagtggaatggagcaca 482 |||| |||||| ||||||| || ||| |||||||| |||||||||| || || |||||| Sbjct: 854 agaggtgcatacaggtctgccgaaagagtttgatcaggttctctagtagagtgtagcaca 795 Query: 483 ataataccggcaagaactgtgagaaacccacaagtctcggaggcaataatgcttgcgctc 542 | | |||| ||||||||||| ||||| || ||| ||||||| ||||| ||||||| ||| Sbjct: 794 agagtaccagcaagaactgtcagaaatccgcaaatctcggatgcaattttgcttgcactc 735 Query: 543 t 543 | Sbjct: 734 t 734
>gb|AY107926.1| Zea mays PCO114417 mRNA sequence Length = 657 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 292 tctagacgaagtagtcttggcgcacgacggtgatgaaat 330 ||||||| ||||||||||| ||||| || |||||||||| Sbjct: 172 tctagacaaagtagtcttgtcgcaccacagtgatgaaat 134
>emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chromosome 11 Contains the Stc2 gene for stanniocalcin 2 and three CpG islands, complete sequence Length = 252980 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 500 tgtgagaaacccacaagtctcggagg 525 ||||||||||||||||||||| |||| Sbjct: 212717 tgtgagaaacccacaagtctctgagg 212692
>emb|AL353093.18| Human DNA sequence from clone RP11-224P11 on chromosome 10 Contains a single-stranded DNA binding protein (SSBP1)(SSBP) pseudogene, complete sequence Length = 156008 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 aggcaggggtgcagtgagagatgca 431 |||||||| |||||||||||||||| Sbjct: 29649 aggcagggctgcagtgagagatgca 29673
>gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence Length = 215961 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ctgcaaaattttaacattttt 170 ||||||||||||||||||||| Sbjct: 167490 ctgcaaaattttaacattttt 167470
>gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence Length = 166987 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ctgcaaaattttaacattttt 170 ||||||||||||||||||||| Sbjct: 34360 ctgcaaaattttaacattttt 34340
>gb|AC099009.2| Drosophila melanogaster clone BACR17M11, complete sequence Length = 188872 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 ttaacatttttcaggccaggatgg 183 |||||||||||| ||||||||||| Sbjct: 51643 ttaacatttttctggccaggatgg 51666
>gb|AC011250.6| Drosophila melanogaster clone BACR21B19, complete sequence Length = 161692 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaattttaacatttttcag 173 |||||||||||||||||||| Sbjct: 121392 aaaattttaacatttttcag 121411
>gb|AC010839.7| Drosophila melanogaster clone BACN19N21, complete sequence Length = 92302 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaattttaacatttttcag 173 |||||||||||||||||||| Sbjct: 22143 aaaattttaacatttttcag 22162
>ref|XM_866254.1| PREDICTED: Bos taurus a disintegrin and metalloproteinase domain 1 (ADAM1), mRNA Length = 2790 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 cacatgaaggtcttgaggctggcc 257 |||||||||| ||||||||||||| Sbjct: 109 cacatgaagggcttgaggctggcc 132
>gb|AC134336.2| Mus musculus BAC clone RP23-134A10 from chromosome 6, complete sequence Length = 204120 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gagtcttcctctttttgctt 361 |||||||||||||||||||| Sbjct: 78420 gagtcttcctctttttgctt 78401
>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence Length = 245088 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 agagatgcataaaggtctgg 442 |||||||||||||||||||| Sbjct: 170598 agagatgcataaaggtctgg 170579
>gb|AF101319.2| Caenorhabditis elegans cosmid K08D9, complete sequence Length = 39573 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 caaaattttaacatttttca 172 |||||||||||||||||||| Sbjct: 3290 caaaattttaacatttttca 3271
>gb|AC131663.3| Mus musculus BAC clone RP23-258B18 from 6, complete sequence Length = 191685 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 gagtcttcctctttttgctt 361 |||||||||||||||||||| Sbjct: 27375 gagtcttcctctttttgctt 27394
>gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, complete sequence Length = 156349 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gtgagtcttcctctttttgc 359 |||||||||||||||||||| Sbjct: 92440 gtgagtcttcctctttttgc 92459
>emb|AL161671.25| Human DNA sequence from clone RP11-64I24 on chromosome 1 Contains a barrier to autointegration factor 1 (BANF1) pseudogene, part of the gene for expressed in hematopoietic cells (heart, liver) (HLL) and a chromosome 6 open reading frame 66 (C6orf66) pseudogene, complete sequence Length = 102349 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 gagatgcataaaggtctgga 443 |||||||||||||||||||| Sbjct: 24644 gagatgcataaaggtctgga 24625
>emb|AL096699.11|HS1145L23 Human DNA sequence from clone RP5-1145L23 on chromosome Xp21.1-21.3 Contains part of the DMD gene for dystrophin (muscular dystrophy, Duchenne and Becker types) and a novel gene, complete sequence Length = 203006 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 831 ggaggcaggggtgcagtgag 850
>emb|AL031388.1|HS737M10 Human DNA sequence from clone RP4-737M10 on chromosome Xq23 Contains the 5' end of the TRPC5 gene for transient receptor potential cation channel subfamily C member 5, complete sequence Length = 107172 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 caagaactgtgagaaacccacaag 516 |||| ||||||||||||||||||| Sbjct: 1629 caaggactgtgagaaacccacaag 1606
>gb|AC009773.27| Homo sapiens 12 BAC RP11-82C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130027 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tctttttgcttccctacatc 370 |||||||||||||||||||| Sbjct: 69365 tctttttgcttccctacatc 69346
>gb|AC102802.2| Homo sapiens chromosome 8, clone RP11-237C9, complete sequence Length = 156578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 78906 ggaggcaggggtgcagtgag 78925
>tpg|BK002945.1| TPA: TPA_inf: Drosophila melanogaster HDC16673 (HDC16673) gene, complete cds Length = 8161 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaattttaacatttttcag 173 |||||||||||||||||||| Sbjct: 62 aaaattttaacatttttcag 81
>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence Length = 148726 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 19886 ggaggcaggggtgcagtgag 19867
>gb|AC093726.3| Homo sapiens BAC clone RP11-5C23 from 7, complete sequence Length = 159041 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 107736 ggaggcaggggtgcagtgag 107717
>gb|AC011613.4|AC011613 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACN04K08, complete sequence Length = 67359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaattttaacatttttcag 173 |||||||||||||||||||| Sbjct: 10393 aaaattttaacatttttcag 10412
>gb|AC151713.4| Mus musculus BAC clone RP24-100K9 from chromosome 8, complete sequence Length = 199295 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aggatggccttgagggcgtc 196 |||||||||||||||||||| Sbjct: 81120 aggatggccttgagggcgtc 81101
>gb|AC092116.3| Homo sapiens chromosome 16 clone CTD-2133M23, complete sequence Length = 61373 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 58505 ggaggcaggggtgcagtgag 58524
>gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18 of 73 of the complete sequence Length = 242171 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 ttaacatttttcaggccaggatgg 183 |||||||||||| ||||||||||| Sbjct: 50400 ttaacatttttctggccaggatgg 50423
>gb|AE003844.5| Drosophila melanogaster chromosome 4, section 2 of 5 of the complete sequence Length = 315846 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaattttaacatttttcag 173 |||||||||||||||||||| Sbjct: 13152 aaaattttaacatttttcag 13171
>gb|AC105327.13| Mus musculus chromosome 8, clone RP24-323I19, complete sequence Length = 215363 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aggatggccttgagggcgtc 196 |||||||||||||||||||| Sbjct: 24719 aggatggccttgagggcgtc 24738
>gb|AC004468.1|AC004468 Homo sapiens Xp21 PAC RPCI1-37A12 containing exons 10 to 16 of the Duchenne Muscular Dystrophy gene, complete sequence Length = 127757 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 12394 ggaggcaggggtgcagtgag 12375
>gb|AC005894.1|AC005894 Drosophila melanogaster, chromosome 2R, region 46A1-46B2, P1 clones DS00050, DS00191, and DS05369, complete sequence Length = 196337 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 ttaacatttttcaggccaggatgg 183 |||||||||||| ||||||||||| Sbjct: 47066 ttaacatttttctggccaggatgg 47089
>gb|AF086807.1|AF086807 Bos taurus fertilin alpha (ADAM 1) mRNA, partial cds Length = 2439 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 cacatgaaggtcttgaggctggcc 257 |||||||||| ||||||||||||| Sbjct: 94 cacatgaagggcttgaggctggcc 117
>emb|CT476827.2| Pan troglodytes chromosome X BAC RP43-033L16, complete sequence Length = 165984 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaggcaggggtgcagtgag 424 |||||||||||||||||||| Sbjct: 33729 ggaggcaggggtgcagtgag 33748 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,424,091 Number of Sequences: 3902068 Number of extensions: 4424091 Number of successful extensions: 98127 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98029 Number of HSP's gapped (non-prelim): 93 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)