Clone Name | rbasd23n11 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_193415.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 816 Score = 111 bits (56), Expect = 3e-21 Identities = 109/126 (86%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 542 tgcgctgaaggcctgatgcatctgtgtggtagccctgttcttgaccttgttcatcgcgct 601 |||||||||| |||| |||||||||| ||| ||||||||| |||| ||||| |||| Sbjct: 546 tgcgctgaagacctgttgcatctgtgc---agctctgttcttggccttcctcatctcgct 490 Query: 602 gaagttgggcatggcattaggaattgaatcaccccctgctggtaagatgtacctcttgtg 661 ||||||||||| |||||||| |||||| || | |||||||||||||||||||||||||| Sbjct: 489 gaagttgggcacagcattaggcattgaaccatctcctgctggtaagatgtacctcttgtg 430 Query: 662 atactt 667 |||||| Sbjct: 429 atactt 424 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 132 tcttttccagacttgcgcctactgagcagcgacttgaggaacttcttgctcttcttcaga 191 ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||| || Sbjct: 782 tcttttctggacttgcgcctgctgagcagcgacttgagaaacttcttgcccttctttgga 723 Query: 192 gtctgctcgctttccttg 209 |||||||||| ||||||| Sbjct: 722 gtctgctcgccttccttg 705 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 465 gaaggtgcacgggcaatcgaccggagcttgcg 496 |||||||||||||| |||||||| |||||||| Sbjct: 574 gaaggtgcacgggcgatcgaccgaagcttgcg 543
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 132 tcttttccagacttgcgcctactgagcagcgacttgaggaacttcttgctcttcttcaga 191 ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||| || Sbjct: 20712637 tcttttctggacttgcgcctgctgagcagcgacttgagaaacttcttgcccttctttgga 20712578 Query: 192 gtctgctcgctttccttg 209 |||||||||| ||||||| Sbjct: 20712577 gtctgctcgccttccttg 20712560 Score = 58.0 bits (29), Expect = 4e-05 Identities = 82/99 (82%), Gaps = 3/99 (3%) Strand = Plus / Minus Query: 544 cgctgaaggcctgatgcatctgtgtggtagccctgttcttgaccttgttcatcgcgctga 603 |||||||| |||| |||||||||| ||| ||||||||| |||| ||||| |||||| Sbjct: 20711684 cgctgaagacctgttgcatctgtgc---agctctgttcttggccttcctcatctcgctga 20711628 Query: 604 agttgggcatggcattaggaattgaatcaccccctgctg 642 ||||||||| |||||||| |||||| || | ||||||| Sbjct: 20711627 agttgggcacagcattaggcattgaaccatctcctgctg 20711589 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 640 ctggtaagatgtacctcttgtgatactt 667 |||||||||||||||||||||||||||| Sbjct: 20711468 ctggtaagatgtacctcttgtgatactt 20711441 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 465 gaaggtgcacgggcaatcgaccggagcttgc 495 |||||||||||||| |||||||| ||||||| Sbjct: 20712053 gaaggtgcacgggcgatcgaccgaagcttgc 20712023
>dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06 Length = 162304 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 132 tcttttccagacttgcgcctactgagcagcgacttgaggaacttcttgctcttcttcaga 191 ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||| || Sbjct: 55595 tcttttctggacttgcgcctgctgagcagcgacttgagaaacttcttgcccttctttgga 55536 Query: 192 gtctgctcgctttccttg 209 |||||||||| ||||||| Sbjct: 55535 gtctgctcgccttccttg 55518 Score = 58.0 bits (29), Expect = 4e-05 Identities = 82/99 (82%), Gaps = 3/99 (3%) Strand = Plus / Minus Query: 544 cgctgaaggcctgatgcatctgtgtggtagccctgttcttgaccttgttcatcgcgctga 603 |||||||| |||| |||||||||| ||| ||||||||| |||| ||||| |||||| Sbjct: 54642 cgctgaagacctgttgcatctgtgc---agctctgttcttggccttcctcatctcgctga 54586 Query: 604 agttgggcatggcattaggaattgaatcaccccctgctg 642 ||||||||| |||||||| |||||| || | ||||||| Sbjct: 54585 agttgggcacagcattaggcattgaaccatctcctgctg 54547 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 640 ctggtaagatgtacctcttgtgatactt 667 |||||||||||||||||||||||||||| Sbjct: 54426 ctggtaagatgtacctcttgtgatactt 54399 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 465 gaaggtgcacgggcaatcgaccggagcttgc 495 |||||||||||||| |||||||| ||||||| Sbjct: 55011 gaaggtgcacgggcgatcgaccgaagcttgc 54981
>gb|AY112279.1| Zea mays CL38040_1 mRNA sequence Length = 509 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Minus Query: 286 ccctgacacttgatgtcttgagcaaggatgacttctttgagag 328 ||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 43 ccctgacgcttgatgtcttgagcaaggatgccttctttgagag 1 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 132 tcttttccagacttgcgcctactgagcagcgacttgaggaacttcttgctcttcttc 188 ||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct: 182 tcttttctggacttgcgcctgctgaggatggacttgaggaacttcttgctcttcttc 126
>gb|AC009244.25| Homo sapiens chromosome 7 clone RP11-305M3, complete sequence Length = 190162 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Plus Query: 3 aaacataaacaacaattactattaa 27 ||||||||||||||||||||||||| Sbjct: 138904 aaacataaacaacaattactattaa 138928
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||||||||||||||||||| Sbjct: 180142 ttgcttgtctttgttttttgtttg 180119
>gb|AC025187.6| Homo sapiens chromosome 5 clone CTD-2383I20, complete sequence Length = 137219 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 77 cctgtgaaaattttcatcccttactgc 103 |||||||||||||||||||||| |||| Sbjct: 120150 cctgtgaaaattttcatccctttctgc 120124
>gb|AC034218.3| Homo sapiens chromosome 5 clone CTD-2008N3, complete sequence Length = 134907 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 77 cctgtgaaaattttcatcccttactgc 103 |||||||||||||||||||||| |||| Sbjct: 88840 cctgtgaaaattttcatccctttctgc 88866
>ref|NM_010849.3| Mus musculus myelocytomatosis oncogene (Myc), mRNA Length = 2354 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 1353 cttcttgctcttcttcagagtc 1332
>gb|AC123830.5| Mus musculus BAC clone RP24-125B17 from chromosome 7, complete sequence Length = 186045 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 504 gcttgcttgtctttgttttttgtttg 529 ||||| |||||||||||||||||||| Sbjct: 164910 gcttgtttgtctttgttttttgtttg 164935
>gb|AC124410.4| Mus musculus BAC clone RP24-266J11 from chromosome 7, complete sequence Length = 162876 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 504 gcttgcttgtctttgttttttgtttg 529 ||||| |||||||||||||||||||| Sbjct: 145378 gcttgtttgtctttgttttttgtttg 145353
>gb|BC006728.1| Mus musculus myelocytomatosis oncogene, mRNA (cDNA clone MGC:11567 IMAGE:3962047), complete cds Length = 1799 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 872 cttcttgctcttcttcagagtc 851
>gb|AC009468.3| Homo sapiens BAC clone GS1-278J22 from 7, complete sequence Length = 152517 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 taaggaggaatcatacaaagtt 46 |||||||||||||||||||||| Sbjct: 111218 taaggaggaatcatacaaagtt 111239
>ref|XM_669396.1| Plasmodium berghei strain ANKA hypothetical protein (PB106823.00.0) partial mRNA Length = 114 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 ataaacaacaattactattaag 28 |||||||||||||||||||||| Sbjct: 5 ataaacaacaattactattaag 26
>gb|AC142323.1| Pan troglodytes BAC clone RP43-72N8 from 7, complete sequence Length = 190220 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 taaggaggaatcatacaaagtt 46 |||||||||||||||||||||| Sbjct: 134000 taaggaggaatcatacaaagtt 134021
>emb|X01023.1|MMCMYC1 Mus musculus c-myc and translocated homologue mRNA, J558 plasmocytoma cells Length = 2300 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 1378 cttcttgctcttcttcagagtc 1357
>emb|BX908769.7| Zebrafish DNA sequence from clone DKEY-78I1 in linkage group 13, complete sequence Length = 68094 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttgag 531 |||||||||||||||||||||| Sbjct: 59413 ttgtctttgttttttgtttgag 59434
>emb|CR392340.11| Zebrafish DNA sequence from clone DKEY-23G12 in linkage group 20, complete sequence Length = 247887 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 503 agcttgcttgtctttgttttttgttt 528 ||||||||||| |||||||||||||| Sbjct: 110857 agcttgcttgtttttgttttttgttt 110882
>dbj|AK133952.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730557C13 product:myelocytomatosis oncogene, full insert sequence Length = 2066 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 1172 cttcttgctcttcttcagagtc 1151
>dbj|AK145084.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830039A12 product:myelocytomatosis oncogene, full insert sequence Length = 2342 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 1352 cttcttgctcttcttcagagtc 1331
>dbj|AK087961.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001J03 product:MYC PROTO-ONCOGENE PROTEIN (C-MYC), full insert sequence Length = 2180 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 1190 cttcttgctcttcttcagagtc 1169
>gb|AF129087.1|AF129087 Medicago sativa mitogen-activated protein kinase homologue (TDY1) gene, complete cds Length = 7346 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 agcttgcttgtctttgtttttt 524 |||||||||||||||||||||| Sbjct: 4968 agcttgcttgtctttgtttttt 4989
>gb|AF076523.1|AF076523 Mus musculus c-Myc mRNA, partial cds Length = 312 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtc 194 |||||||||||||||||||||| Sbjct: 175 cttcttgctcttcttcagagtc 154
>ref|XM_637505.1| Dictyostelium discoideum hypothetical protein (DDB0217972), partial mRNA Length = 3519 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 381 ttatctcttttgatgggtattgcag 405 |||||||||||||||||||| |||| Sbjct: 3155 ttatctcttttgatgggtatagcag 3131
>gb|AC168021.4| Mus musculus BAC clone CH25-320O8 from chromosome 9, complete sequence Length = 96013 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttgagctg 534 ||||||||||| ||||||||||||| Sbjct: 8537 ttgtctttgttgtttgtttgagctg 8561
>gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, complete sequence Length = 196738 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 gcttgcttgtctttgttttttgttt 528 |||||||||| |||||||||||||| Sbjct: 27830 gcttgcttgtttttgttttttgttt 27854
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 ttatctcttttgatgggtattgcag 405 |||||||||||||||||||| |||| Sbjct: 4626 ttatctcttttgatgggtatagcag 4650
>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence Length = 135612 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 gcttgcttgtctttgttttttgttt 528 |||||||||| |||||||||||||| Sbjct: 96782 gcttgcttgtttttgttttttgttt 96806
>gb|AC155988.2| Xenopus tropicalis clone ISB1-281C5, complete sequence Length = 85618 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 tgaagcttgcttgtctttgtttttt 524 ||||||||| ||||||||||||||| Sbjct: 51670 tgaagcttgtttgtctttgtttttt 51646
>gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, complete sequence Length = 162281 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 atcttttatctcttttgatgg 396 ||||||||||||||||||||| Sbjct: 39788 atcttttatctcttttgatgg 39808
>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204560 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 377 tcttttatctcttttgatgggtatt 401 |||||||||||||| |||||||||| Sbjct: 78637 tcttttatctctttagatgggtatt 78613
>gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, complete sequence Length = 186265 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 517 tgttttttgtttgagctgcgg 537 ||||||||||||||||||||| Sbjct: 115994 tgttttttgtttgagctgcgg 115974
>gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P10, complete sequence Length = 157365 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 tgttttttgtttgagctgcgg 537 ||||||||||||||||||||| Sbjct: 136351 tgttttttgtttgagctgcgg 136371
>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete sequence Length = 223086 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 aaacataaacaacaattactattaa 27 ||||||||| ||||||||||||||| Sbjct: 75142 aaacataaaaaacaattactattaa 75166
>gb|AC008950.4|AC008950 Homo sapiens chromosome 5 clone CTD-2336H4, complete sequence Length = 111183 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 517 tgttttttgtttgagctgcgg 537 ||||||||||||||||||||| Sbjct: 82854 tgttttttgtttgagctgcgg 82834
>gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4, complete sequence Length = 122955 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 377 tcttttatctcttttgatgggtatt 401 |||||||||||||| |||||||||| Sbjct: 43999 tcttttatctctttagatgggtatt 43975
>emb|BX294655.5| Mouse DNA sequence from clone RP23-324H24 on chromosome X, complete sequence Length = 57957 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 cttgtctttgttttttgtttg 529 ||||||||||||||||||||| Sbjct: 39075 cttgtctttgttttttgtttg 39055
>gb|AC140491.4| Mus musculus BAC clone RP24-136G21 from 9, complete sequence Length = 163404 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttgagctg 534 ||||||||||| ||||||||||||| Sbjct: 141285 ttgtctttgttgtttgtttgagctg 141309
>gb|AC154102.15| Mus musculus chromosome 8, clone RP24-186O14, complete sequence Length = 171510 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 97012 ttgtctttgttttttgtttg 97031
>gb|AY618131.1| Sterkiella histriomuscorum clone UGC1O0006_C22_R genomic sequence Length = 995 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 ttttttgtttgagctgcggatgct 542 ||||||||||||||||| |||||| Sbjct: 874 ttttttgtttgagctgccgatgct 897
>gb|AY617643.1| Sterkiella histriomuscorum clone UGC1O0003_O17_R genomic sequence Length = 1020 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 ttttttgtttgagctgcggatgct 542 ||||||||||||||||| |||||| Sbjct: 874 ttttttgtttgagctgccgatgct 897
>gb|AF195956.1| Mus musculus interleukin-2 (Il2) gene, complete cds; and testis nuclear RNA-binding protein (Tenr) gene, partial cds Length = 24900 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 347 ttgcttgtttttgttttttgtttg 370
>gb|AC005575.1| Homo sapiens chromosome 5, BAC clone 246j10 (LBNL H186), complete sequence Length = 48645 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tctttgttttttgtttgagc 532 |||||||||||||||||||| Sbjct: 10212 tctttgttttttgtttgagc 10193
>gb|AC120559.10| Mus musculus chromosome 9, clone RP24-566A4, complete sequence Length = 141300 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cttgtctttgttttttgttt 528 |||||||||||||||||||| Sbjct: 113681 cttgtctttgttttttgttt 113662
>ref|XM_609444.2| PREDICTED: Bos taurus similar to M-phase phosphoprotein 9 (LOC530962), mRNA Length = 3001 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tcgaataaattggtgaatcc 374 |||||||||||||||||||| Sbjct: 1738 tcgaataaattggtgaatcc 1757
>gb|AC140680.4| Mus musculus BAC clone RP24-548A12 from chromosome Y, complete sequence Length = 222176 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 caacaattactattaaggag 31 |||||||||||||||||||| Sbjct: 165263 caacaattactattaaggag 165282
>gb|AC159238.2| Mus musculus BAC clone RP24-477O8 from chromosome 12, complete sequence Length = 176407 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 aatcaccccctgctggtaag 647 |||||||||||||||||||| Sbjct: 121438 aatcaccccctgctggtaag 121457
>gb|AC163616.3| Mus musculus BAC clone RP23-114P22 from chromosome 3, complete sequence Length = 212857 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 145830 ttgtctttgttttttgtttg 145811
>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence Length = 236917 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 41453 ttgcttgtttttgttttttgtttg 41476
>gb|AC026232.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-396K2, complete sequence Length = 74340 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttg 525 |||||||||||||||||||| Sbjct: 31707 ttgcttgtctttgttttttg 31688
>gb|AC131679.2| Mus musculus BAC clone RP23-339I6 from chromosome 5, complete sequence Length = 198890 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gtgtggtagccctgttcttg 584 |||||||||||||||||||| Sbjct: 53293 gtgtggtagccctgttcttg 53312
>gb|AC141875.4| Mus musculus BAC clone RP24-316O22 from chromosome Y, complete sequence Length = 170988 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 caacaattactattaaggag 31 |||||||||||||||||||| Sbjct: 103137 caacaattactattaaggag 103156
>gb|AC145795.2| Xenopus tropicalis chromosome CH216-18M1, complete sequence Length = 161076 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tttccttggaatcatcattg 221 |||||||||||||||||||| Sbjct: 129212 tttccttggaatcatcattg 129231
>gb|AC140678.2| Mus musculus BAC clone RP24-553I16 from chromosome Y, complete sequence Length = 161612 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 caacaattactattaaggag 31 |||||||||||||||||||| Sbjct: 77310 caacaattactattaaggag 77329
>gb|AC008020.37| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-598k13, complete sequence Length = 184044 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtctg 196 |||||| ||||||||||||||||| Sbjct: 55766 cttctttctcttcttcagagtctg 55743
>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence Length = 163182 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 caaggatgacttctttgaga 327 |||||||||||||||||||| Sbjct: 99872 caaggatgacttctttgaga 99891
>emb|CR669399.2|CNS0FFH9 Tetraodon nigroviridis full-length cDNA Length = 1242 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 aatccgatcttttatctctt 389 |||||||||||||||||||| Sbjct: 1201 aatccgatcttttatctctt 1182
>gb|AC114563.12| Mus musculus chromosome 7, clone RP23-56E5, complete sequence Length = 166508 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 72151 ttgtctttgttttttgtttg 72132
>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence Length = 227330 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 545 gctgaaggcctgatgcatctgtgt 568 |||||||||||||| ||||||||| Sbjct: 99475 gctgaaggcctgatccatctgtgt 99452
>gb|AC157789.5| Mus musculus chromosome 8, clone RP24-95E2, complete sequence Length = 203403 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cttgtctttgttttttgttt 528 |||||||||||||||||||| Sbjct: 48602 cttgtctttgttttttgttt 48583
>emb|CR759843.7| Zebrafish DNA sequence from clone DKEYP-82B4 in linkage group 22, complete sequence Length = 190165 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 cttgtctttgttttttgttt 528 |||||||||||||||||||| Sbjct: 39902 cttgtctttgttttttgttt 39921
>emb|CR936441.6| Mouse DNA sequence from clone RP23-285D5 on chromosome X, complete sequence Length = 112051 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 61757 ttgtctttgttttttgtttg 61776
>emb|AL627407.10| Human DNA sequence from clone RP11-496J2 on chromosome X, complete sequence Length = 110978 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 81175 ttgcttgtttttgttttttgtttg 81152
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 1061214 ttgtctttgttttttgtttg 1061195
>emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chromosome 3 Contains the 3' end of the Il21 gene for interleukin 21, a novel pseudogene (D530049N12RIK), a novel gene (C030047M16RIK), the Il2 gene for interleukin 2, the Tenr gene for testis nuclear RNA binding protein, a NADH dehydrogenase subunit 5 (ND5) pseudogene and a putative S1 RNA binding domain protein (PS1D) (2810055E05RIK) pseudogene, complete sequence Length = 161393 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 70742 ttgcttgtttttgttttttgtttg 70719
>emb|CR381635.11| Zebrafish DNA sequence from clone DKEY-171C9 in linkage group 7, complete sequence Length = 173058 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 118546 ttgtctttgttttttgtttg 118527
>gb|AC103077.6| Rattus norvegicus BAC CH230-224J5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 200930 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ttttgatgggtattgcagta 407 |||||||||||||||||||| Sbjct: 120120 ttttgatgggtattgcagta 120139
>gb|AC159892.2| Mus musculus BAC clone RP23-313P23 from chromosome 9, complete sequence Length = 199351 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 78175 ttgtctttgttttttgtttg 78194
>emb|CR749167.8| Zebrafish DNA sequence from clone DKEY-23A17 in linkage group 5, complete sequence Length = 155288 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 cttgtctttgttttttgttt 528 |||||||||||||||||||| Sbjct: 50838 cttgtctttgttttttgttt 50857
>gb|AC010463.6| Homo sapiens chromosome 19 clone CTD-2278I10, complete sequence Length = 118338 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 gcttgtctttgttttttgtt 527 |||||||||||||||||||| Sbjct: 83049 gcttgtctttgttttttgtt 83030
>gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC Clone b264n1, complete sequence Length = 89743 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtctg 196 |||||| ||||||||||||||||| Sbjct: 80512 cttctttctcttcttcagagtctg 80489
>dbj|AK164980.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130102P09 product:hypothetical protein, full insert sequence Length = 2395 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 963 ttgtctttgttttttgtttg 982
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tttgatgggtattgcagtat 408 |||||||||||||||||||| Sbjct: 1549502 tttgatgggtattgcagtat 1549483
>gb|AC127467.3| Atelerix albiventris clone LB4-4E15, complete sequence Length = 139228 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tttgatgggtattgcagtat 408 |||||||||||||||||||| Sbjct: 130215 tttgatgggtattgcagtat 130196
>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete sequence Length = 195224 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 81866 ttgcttgtttttgttttttgtttg 81843
>gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosome 14, complete sequence Length = 202760 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 125998 ttgtctttgttttttgtttg 126017
>gb|AC154778.2| Mus musculus BAC clone RP24-459I17 from chromosome 12, complete sequence Length = 155367 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 112365 ttgtctttgttttttgtttg 112384
>dbj|AK030061.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932420K09 product:otogelin, full insert sequence Length = 3560 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 545 gctgaaggcctgatgcatctgtgt 568 |||||||||||||| ||||||||| Sbjct: 2610 gctgaaggcctgatccatctgtgt 2633
>gb|AC093729.2| Homo sapiens BAC clone RP11-11N6 from 4, complete sequence Length = 148616 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 11348 ttgtctttgttttttgtttg 11367
>gb|AF290391.1|AF290391 Mus musculus strain C57/BL6 interleukin 2 (Il2) gene, distal regulatory region Length = 6381 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 4207 ttgcttgtttttgttttttgtttg 4230
>gb|AC079831.24| Mus musculus strain C57BL/6J chromosome 16 clone rp23-374p12, complete sequence Length = 147412 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cttcttgctcttcttcagagtctg 196 |||||| ||||||||||||||||| Sbjct: 92513 cttctttctcttcttcagagtctg 92536
>gb|AC011379.7| Homo sapiens chromosome 5 clone CTB-131B5, complete sequence Length = 170797 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tctttgttttttgtttgagc 532 |||||||||||||||||||| Sbjct: 73219 tctttgttttttgtttgagc 73238
>gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, complete sequence Length = 224138 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cttcttgctcttcttcagagtctg 196 |||||| ||||||||||||||||| Sbjct: 53276 cttctttctcttcttcagagtctg 53299
>gb|AC151393.3| Atelerix albiventris clone LB4-130D24, complete sequence Length = 71468 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tttgatgggtattgcagtat 408 |||||||||||||||||||| Sbjct: 24362 tttgatgggtattgcagtat 24343
>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence Length = 212275 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 accctgacacttgatgtctt 304 |||||||||||||||||||| Sbjct: 142658 accctgacacttgatgtctt 142677
>gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-357j7, complete sequence Length = 222589 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 cttcttgctcttcttcagagtctg 196 |||||| ||||||||||||||||| Sbjct: 174551 cttctttctcttcttcagagtctg 174528
>gb|AC130926.4| Rattus norvegicus BAC CH230-39O11 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217219 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ttttgatgggtattgcagta 407 |||||||||||||||||||| Sbjct: 143420 ttttgatgggtattgcagta 143401
>emb|CT009720.16| Mouse DNA sequence from clone RP23-21J17 on chromosome 9, complete sequence Length = 216098 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 cttgtctttgttttttgttt 528 |||||||||||||||||||| Sbjct: 98574 cttgtctttgttttttgttt 98593
>gb|AC151732.2| Mus musculus BAC clone RP23-240L23 from 8, complete sequence Length = 204634 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 101700 ttgcttgtttttgttttttgtttg 101677
>gb|AC109464.2| Homo sapiens chromosome 5 clone RP11-284A20, complete sequence Length = 161641 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 32722 ttgtctttgttttttgtttg 32703
>gb|AC171325.5| Mus musculus chromosome 3, clone RP23-124B15, complete sequence Length = 191795 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttgtctttgttttttgtttg 529 |||||||||||||||||||| Sbjct: 112123 ttgtctttgttttttgtttg 112104
>emb|AL662823.12| Mouse DNA sequence from clone RP23-243E17 on chromosome 3, complete sequence Length = 215241 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 101488 ttgcttgtttttgttttttgtttg 101465
>emb|AL645807.4| Mouse DNA sequence from clone CT7-337H6 on chromosome 3, complete sequence Length = 201500 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 ttgcttgtctttgttttttgtttg 529 |||||||| ||||||||||||||| Sbjct: 29815 ttgcttgtttttgttttttgtttg 29792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,597,762 Number of Sequences: 3902068 Number of extensions: 6597762 Number of successful extensions: 279033 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 278550 Number of HSP's gapped (non-prelim): 483 length of query: 670 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 647 effective length of database: 17,143,297,704 effective search space: 11091713614488 effective search space used: 11091713614488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)