ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24c10 |
|---|---|
| Clone Library Name | barley_pub |
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 135 bits (340), Expect = 1e-31 Identities = 73/146 (50%), Positives = 92/146 (63%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASK 491 +K P N KPTKTLFVINFDPI T+ D+E+HF P+G+++NVRIR+NF+FVQFETQE+A+K Sbjct: 83 AKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATK 142 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGGYGRQXXXXXXXXXXXXXXXX 311 AL+AT +K+LDRV+SVEYA +DD E R R G R+ Sbjct: 143 ALEATQRSKILDRVVSVEYALKDDDE------RDDRNGGRSPRRSLSPVYRRRPSPDYGR 196 Query: 310 XXXXXYGRPVSPQYGAYGRSRSPVRD 233 GR SP YGR+RSP D Sbjct: 197 RPSPGQGRRPSPD---YGRARSPEYD 219 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKL 461 + +FV NF+ TR SDLER F +GR+ V ++ +AFV FE + +A A+ + Sbjct: 2 RPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAI------RK 54 Query: 460 LD--------RVISVEYAFRDDSEPGDKYDRPS 386 LD R +SVE+A + P PS Sbjct: 55 LDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPS 87
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 121 bits (303), Expect = 2e-27 Identities = 68/148 (45%), Positives = 86/148 (58%), Gaps = 10/148 (6%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHL 470 +P+KTLFVINFD NTR DLERHF P+G+I NVRIR+NFAF+Q+E QE+A++ALDAT+ Sbjct: 93 RPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNS 152 Query: 469 TKLLDRVISVEYAFRDDSEPGDKY----------DRPSRGAGGYGRQXXXXXXXXXXXXX 320 +KL+D+VISVEYA +DD G+ Y DR R Y R+ Sbjct: 153 SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPV 212 Query: 319 XXXXXXXXYGRPVSPQYGAYGRSRSPVR 236 SP YG RS SP + Sbjct: 213 AHKR------ERTSPDYGRGRRSPSPYK 234 Score = 39.7 bits (91), Expect = 0.009 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDA 479 K +F NF+ + R SDLER F +G++ V ++ FAFV E + +A A+ A Sbjct: 2 KPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRA 54
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 114 bits (286), Expect = 2e-25 Identities = 53/89 (59%), Positives = 72/89 (80%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHL 470 +P+KTLFVINFD NTR DLE+HF P+G+I NVRIR+NFAF+Q+E QE+A++ALDA++ Sbjct: 94 RPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNN 153 Query: 469 TKLLDRVISVEYAFRDDSEPGDKYDRPSR 383 +KL+D+VISVEYA +DD G+ + R Sbjct: 154 SKLMDKVISVEYAVKDDDARGNGHSPERR 182 Score = 38.1 bits (87), Expect = 0.027 Identities = 20/54 (37%), Positives = 31/54 (57%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDA 479 K +F NF+ + R DLER F +G++ V ++ FAFV E + +A A+ A Sbjct: 2 KPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRA 54
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 52.8 bits (125), Expect = 1e-06 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Frame = -2 Query: 673 YSKPPVNTKP-----TKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFET 509 + +PP++ + LFV F P++ + S+L FGPFG + V+I FAFV+FE Sbjct: 109 HGRPPMHHRQEGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEE 167 Query: 508 QEEASKALDATHLTKLLDRVISVEYA 431 E A+KA++ H ++ + V Y+ Sbjct: 168 AESAAKAIEEVHGKSFANQPLEVVYS 193
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = -2 Query: 607 NTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAF 428 N R D++R F +GR+ V ++ + FV+FE +A A+ + +L + VE+A Sbjct: 12 NVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA- 70 Query: 427 RDDSEPGDKYDRPSR-GAGGY 368 R D Y SR G GGY Sbjct: 71 RGPRRDRDGYSYGSRSGGGGY 91
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 44.7 bits (104), Expect = 3e-04 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y +PP + + +L V N T L R F +GR+ +V I ++ FAFV+ Sbjct: 2 YGRPPPDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 60 Query: 517 FETQEEASKALDATHLTKLLDRVISVE---YAFRDDSEPGDKYDRPSR-GAGGYGRQ 359 F + +A A+DA L R + V+ Y DS + P R G GGYGR+ Sbjct: 61 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 44.7 bits (104), Expect = 3e-04 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y +PP + + +L V N T L R F +GR+ +V I ++ FAFV+ Sbjct: 2 YGRPPPDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 60 Query: 517 FETQEEASKALDATHLTKLLDRVISVE---YAFRDDSEPGDKYDRPSR-GAGGYGRQ 359 F + +A A+DA L R + V+ Y DS + P R G GGYGR+ Sbjct: 61 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 44.7 bits (104), Expect = 3e-04 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y +PP + + +L V N T L R F +GR+ +V I ++ FAFV+ Sbjct: 2 YGRPPPDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 60 Query: 517 FETQEEASKALDATHLTKLLDRVISVE---YAFRDDSEPGDKYDRPSR-GAGGYGRQ 359 F + +A A+DA L R + V+ Y DS + P R G GGYGR+ Sbjct: 61 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRR 117
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 44.7 bits (104), Expect = 3e-04 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y +PP + + +L V N T L R F +GR+ +V I ++ FAFV+ Sbjct: 2 YGRPPPDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 60 Query: 517 FETQEEASKALDATHLTKLLDRVISVE---YAFRDDSEPGDKYDRPSR-GAGGYGRQ 359 F + +A A+DA L R + V+ Y DS + P R G GGYGR+ Sbjct: 61 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRR 117
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 44.3 bits (103), Expect = 4e-04 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P D+++ FG FG + VR+ K F AF ++ + +EA A+ A T LL Sbjct: 711 PFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLG 770 Query: 454 RVISVEYAFRDDSEPGDKYDR 392 R + ++YA D S ++ +R Sbjct: 771 RRLVLQYAQADASNAEEEIER 791
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 43.9 bits (102), Expect = 5e-04 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALD 482 +T +I P D+ FG +G++ +VR+ K F F F + EA A+D Sbjct: 701 RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMD 760 Query: 481 ATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAG 374 A T LL R + +E+A + +P + ++ + G Sbjct: 761 ALKNTHLLGRRLVLEFANEEAVDPEQEIEQIEKKVG 796 Score = 34.3 bits (77), Expect = 0.39 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKL 461 +FV P T L HF +I++ + ++ FV F++ E A +A + T + Sbjct: 6 VFVSGLPPTFTN-DQLRMHFSSRFQITDAHVLPKRRIGFVGFKSSEAAQQAASYFNKTYV 64 Query: 460 LDRVISVEYAFRDDSEPGDKYDRPSRGA 377 ISVE A DSEP K ++ +G+ Sbjct: 65 KMSKISVEIAKPIDSEPVKKAEKHRKGS 92 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQF---ETQEEASKA 488 LFV N P + SDLE F FG+I + + K FA+VQ+ + +A K Sbjct: 303 LFVRNL-PYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKE 361 Query: 487 LDATHLTKLLDRVI 446 LD H L ++ Sbjct: 362 LDGKHFQGRLMHIL 375
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 43.9 bits (102), Expect = 5e-04 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI----RKNFAFVQFETQEEASKALDATH 473 +++FV D TR +L R F G+I ++ + FAF+++ET+E A+ AL++ + Sbjct: 346 RSIFVGQLDKETTR-EELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAALESEN 404 Query: 472 LTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGG 371 L++ + V+Y E G +++R G G Sbjct: 405 HAIFLNKTMHVQY-----KEVGGRHNRKFSGKNG 433
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 43.5 bits (101), Expect = 6e-04 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEA 497 ++KP T +I P D++ G +G++ +VR+ K F AF +F T EA Sbjct: 715 SSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREA 774 Query: 496 SKALDATHLTKLLDRVISVEYA 431 + A+ A T LL R + ++YA Sbjct: 775 ANAMRALKNTHLLGRHLVLQYA 796 Score = 30.8 bits (68), Expect = 4.3 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = -2 Query: 643 TKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKA 488 TK LF+ N + DL+ FGPFG++ V + K FA++ F ++A +A Sbjct: 322 TKRLFLRNLT-YSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKL 461 L V NF P T +L F PFG + + I A ++F + +A T++ Sbjct: 508 LLVKNF-PYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRI 566 Query: 460 LDRVISVEYAFRD 422 ++ +E A RD Sbjct: 567 KSSILYLEKAPRD 579
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 42.7 bits (99), Expect = 0.001 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 12/117 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y +PP + + +L V N T L R F +GR+ +V I ++ FAFV+ Sbjct: 3 YGRPPPDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61 Query: 517 FETQEEASKALDATHLTKLLDRVISVE---YAFRDDSEPGDKYDRPSR-GAGGYGRQ 359 F + +A A+DA L R + V+ Y DS + P R G+ GYGR+ Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRR 118
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 42.7 bits (99), Expect = 0.001 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIR--------KNFAFVQ 518 Y++PP NT +LF+ N TR DL R FG +G I +V I + FA+VQ Sbjct: 4 YTRPP-NT----SLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQ 57 Query: 517 FETQEEASKALDATHLTKLLDRVISVEYAFRDDSEPG 407 FE +A AL + + R I +++A D PG Sbjct: 58 FEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPG 94
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = -2 Query: 604 TRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKLLDRV 449 TR +DL+ F +G++ ++ N + FV T EEA+K ++ H T+L ++ Sbjct: 439 TRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKM 498 Query: 448 ISVEYAFRDDSEPGDK 401 ISVE A SEP K Sbjct: 499 ISVEKA---KSEPAGK 511
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI-------RKNFAFVQFE 512 S P T +FV D T SDL + F +G + V+I K + FV FE Sbjct: 23 SAPRYGTVIPNRIFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFE 81 Query: 511 TQEEASKALDATHLTKLLDRVISVEYAFR 425 TQE+A K L D+ +++ A R Sbjct: 82 TQEDAQKILQEAEKLNYKDKKLNIGPAIR 110
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI-------RKNFAFVQFE 512 S P T +FV D T SDL + F +G + V+I K + FV FE Sbjct: 23 SAPRYGTVIPNRIFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFE 81 Query: 511 TQEEASKALDATHLTKLLDRVISVEYAFR 425 TQE+A K L D+ +++ A R Sbjct: 82 TQEDAQKILQEAEKLNYKDKKLNIGPAIR 110
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Frame = -2 Query: 604 TRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKLLDRV 449 TR +DL+ F +G++ ++ N + FV T EEA+K ++ H T+L ++ Sbjct: 417 TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKM 476 Query: 448 ISVEYAFRDDSEPGDKYDRPSRGAGG 371 ISVE A +EP K R + G Sbjct: 477 ISVEKA---KNEPVGKKTSDKRDSDG 499
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALD 482 +T +I P D+ FG +G++ +VR+ K F F F + EA A+D Sbjct: 696 RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMD 755 Query: 481 ATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAG 374 A T LL R + +E+A + + ++ R + G Sbjct: 756 ALKNTHLLGRRLVLEFANEEAIDAEEEIQRIEKKVG 791 Score = 33.1 bits (74), Expect = 0.87 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEE 500 N + + LFV N T+ S+LE F PFG+I + + K FA+VQ+ + Sbjct: 290 NIRISARLFVRNLS-YETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDA 348 Query: 499 ASKA 488 A +A Sbjct: 349 AVEA 352 Score = 31.6 bits (70), Expect = 2.5 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKL 461 +FV P T L++HF +++ + ++ FV F++ E A +A+ + T + Sbjct: 6 VFVSGLPPTLTN-DQLKKHFETRFHVTDAHVLPKRRIGFVGFKSSEAAQQAVSYFNKTYM 64 Query: 460 LDRVISVEYAFRDDSEPGDKYD 395 ISV+ A D+EP + D Sbjct: 65 RMSKISVDIAKPIDAEPAHRKD 86
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/66 (34%), Positives = 35/66 (53%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +FV N P NT ++ F +G+IS I KNF FV +++ EA +A+ H L Sbjct: 4 IFVGNLSP-NTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62 Query: 454 RVISVE 437 ++VE Sbjct: 63 MAMNVE 68
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALD 482 N P LF+ N N DL R F P+G I + I+ F F+QF+ + A++ Sbjct: 325 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 382
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 8/96 (8%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNV--------RIRKNFAFVQFETQEEASK 491 P +LFV N +TR DL R FG +G I +V R + FA+VQFE +A Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSR 383 AL + R I +++A D P + R Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGR 102
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 8/96 (8%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNV--------RIRKNFAFVQFETQEEASK 491 P +LFV N +TR DL R FG +G I +V R + FA+VQFE +A Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSR 383 AL + R I +++A D P + R Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGR 102
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P D+ F FG++ +VR+ K F AFV+F +EA A+D H LL Sbjct: 771 PFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLG 830 Query: 454 RVISVEYAFRDDSEPGDKYDRPSR 383 R + ++YA D + ++ R ++ Sbjct: 831 RRLVMQYAEEDAVDAEEEIARMTK 854 Score = 32.3 bits (72), Expect = 1.5 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 13/104 (12%) Frame = -2 Query: 646 PTKTLFV--INFDPINTRVSDLERHFGPFGRISNVRIRKN-----------FAFVQFETQ 506 PT ++F+ +NF N ++D + F F ++ V+ + + F FV+F T+ Sbjct: 661 PTVSIFIKNLNFSTTNQNLTDRFKVFTGFV-VAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719 Query: 505 EEASKALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAG 374 E+A+ + A T + I ++ + R S+ G+ + ++ +G Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSG 763
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/68 (26%), Positives = 37/68 (54%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ N + + + SD+E F +G+I+ + K FAFVQ++ ++ A A+ + Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77 Query: 454 RVISVEYA 431 +V+ + A Sbjct: 78 QVVDINLA 85
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 40.8 bits (94), Expect = 0.004 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEE 500 NT+ +KT ++N+ P N +L+ FG G I + ++ ++ + FV + ++ Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 499 ASKALDATHLTKLLDRVISVEYA 431 A KA++ + +L + I V YA Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA 115 Score = 38.9 bits (89), Expect = 0.016 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P + S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 278 IFVYNLAP-DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336 Query: 478 THLTKLLDRVISVEY 434 + +L DRV+ V + Sbjct: 337 LNGYRLGDRVLQVSF 351
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 40.8 bits (94), Expect = 0.004 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEE 500 NT+ +KT ++N+ P N +L+ FG G I + ++ ++ + FV + ++ Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 499 ASKALDATHLTKLLDRVISVEYA 431 A KA++ + +L + I V YA Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA 115 Score = 38.9 bits (89), Expect = 0.016 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P + S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 278 IFVYNLAP-DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336 Query: 478 THLTKLLDRVISVEY 434 + +L DRV+ V + Sbjct: 337 LNGYRLGDRVLQVSF 351
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 40.8 bits (94), Expect = 0.004 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P DL FG FG++ +VR+ K F AFV+F +EA A+ LL Sbjct: 725 PFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLG 784 Query: 454 RVISVEYAFRDDSEPGDKYDRPSR 383 R + ++YA +D + +R ++ Sbjct: 785 RRLVMQYAEQDPENAEVEIERMTK 808
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 40.8 bits (94), Expect = 0.004 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEE 500 NT+ +KT ++N+ P N +L+ FG G I + ++ ++ + FV + ++ Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 499 ASKALDATHLTKLLDRVISVEYA 431 A KA++ + +L + I V YA Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA 115 Score = 38.9 bits (89), Expect = 0.016 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P + S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 279 IFVYNLAP-DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337 Query: 478 THLTKLLDRVISVEY 434 + +L DRV+ V + Sbjct: 338 LNGYRLGDRVLQVSF 352
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 40.8 bits (94), Expect = 0.004 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 P R DLER F +GR ++ I+ + FV+FE +A A+ + +LL + VE Sbjct: 11 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 70 Query: 433 AFRDDSEPG--DKYD--RPSRGAGGYGR 362 A R + D+YD R GG GR Sbjct: 71 A-RGTARGSNRDRYDDRYGGRRGGGGGR 97
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/91 (28%), Positives = 44/91 (48%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ +P R D+ER F +GRI ++ +++ F FV+FE +A A+ +L Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 454 RVISVEYAFRDDSEPGDKYDRPSRGAGGYGR 362 +++E+A SRG G GR Sbjct: 65 ERVTIEHA-----------RARSRGGRGRGR 84
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/91 (28%), Positives = 44/91 (48%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ +P R D+ER F +GRI ++ +++ F FV+FE +A A+ +L Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 454 RVISVEYAFRDDSEPGDKYDRPSRGAGGYGR 362 +++E+A SRG G GR Sbjct: 65 ERVTIEHA-----------RARSRGGRGRGR 84
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI-------RKNFAFVQFE 512 S P T +FV D T +DL + F +G + V+I K + F+ FE Sbjct: 23 SGPRYGTVIPNRIFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFE 81 Query: 511 TQEEASKALDATHLTKLLDRVISVEYAFR 425 TQE+A K L D+ +++ A R Sbjct: 82 TQEDAQKILQEAEKLNYKDKKLNIGPAIR 110
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/91 (28%), Positives = 44/91 (48%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ +P R D+ER F +GRI ++ +++ F FV+FE +A A+ +L Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 454 RVISVEYAFRDDSEPGDKYDRPSRGAGGYGR 362 +++E+A SRG G GR Sbjct: 65 ERVTIEHA-----------RARSRGGRGRGR 84
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 40.0 bits (92), Expect = 0.007 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = -2 Query: 661 PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQ 506 P +T +FV N P ++ S L + FGPFG ++NV++ K F FV Sbjct: 283 PGHTGTGWCIFVYNLSP-DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341 Query: 505 EEASKALDATHLTKLLDRVISVEY 434 +EA+ A+ + + +L DRV+ V + Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSF 365
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 40.0 bits (92), Expect = 0.007 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Frame = -2 Query: 652 TKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIR--------KNFAFVQFETQEEA 497 ++P+ TLF+ N N + F G + +VRI K F +VQF E+A Sbjct: 263 SEPSDTLFLGNLS-FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321 Query: 496 SKALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGGYG 365 KALDA + +R + ++++ + G + SRG GG G Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSPRPNNDGGR--GGSRGFGGRG 363
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 40.0 bits (92), Expect = 0.007 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = -2 Query: 661 PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQ 506 P +T +FV N P ++ S L + FGPFG ++NV++ K F FV Sbjct: 295 PGHTGTGWCIFVYNLSP-DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353 Query: 505 EEASKALDATHLTKLLDRVISVEY 434 +EA+ A+ + + +L DRV+ V + Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSF 377
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 40.0 bits (92), Expect = 0.007 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = -2 Query: 661 PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQ 506 P +T +FV N P ++ S L + FGPFG ++NV++ K F FV Sbjct: 290 PGHTGTGWCIFVYNLSP-DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348 Query: 505 EEASKALDATHLTKLLDRVISVEY 434 +EA+ A+ + + +L DRV+ V + Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSF 372
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 39.7 bits (91), Expect = 0.009 Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Frame = -2 Query: 604 TRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLD-R 452 T +DL R F +G I +V I K F FV+F + +A ALD T KL+D R Sbjct: 30 TTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDGR 88 Query: 451 VISVEYAFRDDSEPGDKYDRPSRGAGGYG 365 + V A KYDRPS GG G Sbjct: 89 ELRVTLA---------KYDRPSDERGGRG 108
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 39.3 bits (90), Expect = 0.012 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKA 488 P N R D+ER +G+I+N+ ++ FAFV FE +A A Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDA 51
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 39.3 bits (90), Expect = 0.012 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Frame = -2 Query: 610 INTRVS--DLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 + +RVS D+E F +G+I +V ++ F FV+F+ + +A DA H L + + E Sbjct: 10 LTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAE---DAVH--DLNGKELGGE 64 Query: 436 YAFRDDSEP-GDKYDRPSRGAGGYG 365 D S+P G DR G GG G Sbjct: 65 RVILDYSKPRGGGGDRGGFGGGGRG 89
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 39.3 bits (90), Expect = 0.012 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIRKN---FAFVQFETQEEASKALDATHLTKLLDRVISVEYA--F 428 DLE F +G++++V I N FAFV+FE +++A KA D + ++LL + VE + Sbjct: 22 DLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKGR 81 Query: 427 RDDSEPGDKYDRPSRGAGGYGR 362 G DR R G +GR Sbjct: 82 PRQGRRGGPMDRGGR-RGDFGR 102
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 39.3 bits (90), Expect = 0.012 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASK 491 P K +FV +P + + +FG FG I + + R+ F F+ F+ +E K Sbjct: 150 PVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 209 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGGYGRQ 359 L+ T +S ++P + Y + G+GG G + Sbjct: 210 VLEKKFHT------VSGSKCEIKVAQPKEVYQQQQYGSGGRGNR 247
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 39.3 bits (90), Expect = 0.012 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSD--LERHFGPFGRISNVRIRKNFAFVQFETQEEASK 491 P V K K LFV N + T V++ LE+ F FG++ V+ K++AFV FE + A K Sbjct: 334 PEVMAK-VKVLFVRN---LATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVK 389 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGA 377 A+D + ++ I + A +P DK + + A Sbjct: 390 AMDEMNGKEIEGEEIEIVLA-----KPPDKKRKERQAA 422
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.9 bits (89), Expect = 0.016 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P + S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 278 IFVYNLAP-DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336 Query: 478 THLTKLLDRVISVEY 434 + +L DRV+ V + Sbjct: 337 LNGYRLGDRVLQVSF 351
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.5 bits (88), Expect = 0.021 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASK 491 P LFV +P+ TR DLE F FG+I + + K+ +AF++F+ +++A + Sbjct: 260 PENILFVCKLNPV-TRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAER 318 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGA 377 A + DR I V+++ GD + + G+ Sbjct: 319 AYFKMQNVLVDDRRIWVDFSQSVSRLHGDWVKKRNAGS 356
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATH 473 +FV N D +T +L F P+G + + + K FAFV A +A++A H Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALH 56 Score = 33.1 bits (74), Expect = 0.87 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Frame = -2 Query: 670 SKP-PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEAS 494 S+P P+NT +FV N T +L F GR+ + K++AFV E + +A Sbjct: 71 SRPRPLNTWK---IFVGNVSAACTS-QELRSLFERRGRVIECDVVKDYAFVHMEKEADAK 126 Query: 493 KALDATHLTKLLDRVISVEYAFRDDS-------EPGDKYDRPSRGAGGY-GRQXXXXXXX 338 A+ + ++ + I+VE + + + GDK +P G + G Sbjct: 127 AAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFD 186 Query: 337 XXXXXXXXXXXXXXYGRPVSPQYGAYGRSRSPVR 236 R +P + +GR RSP+R Sbjct: 187 YQQAFGNSTGGFDGQARQPTPPF--FGRDRSPLR 218
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATH 473 +FV N D +T +L F P+G + + + K FAFV A +A++A H Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALH 56 Score = 33.1 bits (74), Expect = 0.87 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Frame = -2 Query: 670 SKP-PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEAS 494 S+P P+NT +FV N T +L F GR+ + K++AFV E + +A Sbjct: 71 SRPRPLNTWK---IFVGNVSAACTS-QELRSLFERRGRVIECDVVKDYAFVHMEKEADAK 126 Query: 493 KALDATHLTKLLDRVISVEYAFRDDS-------EPGDKYDRPSRGAGGY-GRQXXXXXXX 338 A+ + ++ + I+VE + + + GDK +P G + G Sbjct: 127 AAIAQLNGKEVKGKRINVELSTKGQKKGPALAIQSGDKTKKPGAGDTAFPGTGGFSATFD 186 Query: 337 XXXXXXXXXXXXXXYGRPVSPQYGAYGRSRSPVR 236 R +P + +GR RSP+R Sbjct: 187 YQQAFGNSTGGFDGQARQPTPPF--FGRDRSPLR 218
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATH 473 +FV N D +T +L F P+G + + + K FAFV A +A++A H Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALH 56 Score = 33.1 bits (74), Expect = 0.87 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Frame = -2 Query: 670 SKP-PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEAS 494 S+P P+NT +FV N T +L F GR+ + K++AFV E + +A Sbjct: 71 SRPRPLNTWK---IFVGNVSAACTS-QELRSLFERRGRVIECDVVKDYAFVHMEKEADAK 126 Query: 493 KALDATHLTKLLDRVISVEYAFRDDS-------EPGDKYDRPSRGAGGY-GRQXXXXXXX 338 A+ + ++ + I+VE + + + GDK +P G + G Sbjct: 127 AAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFD 186 Query: 337 XXXXXXXXXXXXXXYGRPVSPQYGAYGRSRSPVR 236 R +P + +GR RSP+R Sbjct: 187 YQQAFGNSTGGFDGQARQPTPPF--FGRDRSPLR 218
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATH 473 +FV N D +T +L F P+G + + + K FAFV A +A++A H Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALH 56 Score = 33.1 bits (74), Expect = 0.87 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Frame = -2 Query: 670 SKP-PVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEAS 494 S+P P+NT +FV N T +L F GR+ + K++AFV E + +A Sbjct: 71 SRPRPLNTWK---IFVGNVSAACTS-QELRSLFERRGRVIECDVVKDYAFVHMEKEADAK 126 Query: 493 KALDATHLTKLLDRVISVEYAFRDDS-------EPGDKYDRPSRGAGGY-GRQXXXXXXX 338 A+ + ++ + I+VE + + + GDK +P G + G Sbjct: 127 AAIAQLNGKEVKGKRINVELSTKGQKKGPGLAIQSGDKTKKPGAGDTAFPGTGGFSATFD 186 Query: 337 XXXXXXXXXXXXXXYGRPVSPQYGAYGRSRSPVR 236 R +P + +GR RSP+R Sbjct: 187 YQQAFGNSTGGFDGQARQPTPPF--FGRDRSPLR 218
>CWC2_CRYNE (Q5KBF5) Pre-mRNA-splicing factor CWC2| Length = 342 Score = 38.5 bits (88), Expect = 0.021 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 6/95 (6%) Frame = -2 Query: 649 KPTKTLFV--INFDPINTRVSD-LERHFGPFGRIS--NVRIRKNFAFVQFETQEEASKAL 485 + +TL++ I P ++++ L RHFG +G+I N+ + AFV +ET +AS A Sbjct: 138 RQNRTLYIGKIQESPDKKQMTETLLRHFGEWGKIVKYNILFGRGVAFVTYETDHQASFAK 197 Query: 484 DA-THLTKLLDRVISVEYAFRDDSEPGDKYDRPSR 383 +A + + D +++V +A +D PG+K R Sbjct: 198 EAMANQSMDGDEILNVRWA-TEDPNPGEKVAEEKR 231
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 38.5 bits (88), Expect = 0.021 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 21/98 (21%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKLLDRVISVE 437 +L++ F FG +++VRI + F F+ F T EEA+ A+D + + RV++V+ Sbjct: 116 ELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQ 175 Query: 436 YAFRD---DSEPGD--KYDR-------PSRGA-GGYGR 362 A R PG YDR PS GGY R Sbjct: 176 KAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRR 213
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 38.1 bits (87), Expect = 0.027 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEE 500 N P L V + T DL F +G +S V + + FAFV FE ++ Sbjct: 114 NPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172 Query: 499 ASKALDATHLTKLLDRVISVEYAFRDDSE---PGDKYDRPSRGAGGYG 365 + +A++ + +L R I V+Y+ + PG RP+ GG G Sbjct: 173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGG 220
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 38.1 bits (87), Expect = 0.027 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ N + + SD+E F +GR++ + K +AFVQ+ + A A+ + L Sbjct: 23 VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAG 82 Query: 454 RVISVEYAFRDDSEPGDKYDRP 389 + + + A EP K DRP Sbjct: 83 QTLDINMA----GEP--KPDRP 98
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 38.1 bits (87), Expect = 0.027 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSD-LERHFGPFGRISNVRIRKNFAFVQFETQEEASKA 488 P V K K LFV N NT + LE+ F FG++ V+ K++AF+ F+ ++ A KA Sbjct: 241 PEVMAK-VKVLFVRNL--ANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKA 297 Query: 487 LDATHLTKLLDRVISVEYAFRDDSE 413 ++ + L I + +A D + Sbjct: 298 MEEMNGKDLEGENIEIVFAKPPDQK 322
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 38.1 bits (87), Expect = 0.027 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T DLE F FG+I + + ++ +AF++FE Sbjct: 249 KPPENV-----LFVCKLNPVTTD-EDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFE 302 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA---------FRDDSEPGDKYDRPSRGAGGYG 365 ++ +A + DR I V+++ +R ++ K RG GG+G Sbjct: 303 DKKSCEEAYSKMDSVLIDDRRIHVDFSQSVSKLSDVWRSETNSKRK-SAARRGGGGWG 359
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 38.1 bits (87), Expect = 0.027 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSD-LERHFGPFGRISNVRIRKNFAFVQFETQEEASKA 488 P V K K LFV N NT + LE+ F FG++ V+ K++AF+ F+ ++ A KA Sbjct: 331 PEVMAK-VKVLFVRNL--ANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKA 387 Query: 487 LDATHLTKLLDRVISVEYAFRDDSE 413 ++ + L I + +A D + Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQK 412
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.1 bits (87), Expect = 0.027 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P D+ F FG++ +VR+ K F AFV+F +EA A+D LL Sbjct: 760 PFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLG 819 Query: 454 RVISVEYAFRDDSEPGDKYDRPSR 383 R + +E+ +D + + ++ +R Sbjct: 820 RRLVMEFVEQDPEDVEQQIEKMTR 843
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 38.1 bits (87), Expect = 0.027 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEE 500 N P L V + T DL F +G +S V + + FAFV FE ++ Sbjct: 112 NPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170 Query: 499 ASKALDATHLTKLLDRVISVEYAFRDDSE---PGDKYDRPSRGAGGYG 365 + +A++ + +L R I V+Y+ + PG RP+ GG G Sbjct: 171 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGG 218
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 37.7 bits (86), Expect = 0.035 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ N + + + +D+E F +G+I + K FAFVQF + A A+ + Sbjct: 19 VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRMIAG 78 Query: 454 RVISVEYA 431 +V+ + A Sbjct: 79 QVLDINLA 86
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.7 bits (86), Expect = 0.035 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 L F PFG I++++I + FAFV+FE E+A+ A+D + ++L R I V Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81 Query: 433 A 431 A Sbjct: 82 A 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.7 bits (86), Expect = 0.035 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 L F PFG I++++I + FAFV+FE E+A+ A+D + ++L R I V Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81 Query: 433 A 431 A Sbjct: 82 A 82
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.7 bits (86), Expect = 0.035 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T DLE F FG I + + ++ +AF++FE Sbjct: 236 KPPENV-----LFVCKLNPVTTD-EDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA 431 +E+ KA + DR I V+++ Sbjct: 290 KEEDCEKAFFKMDNVLIDDRRIHVDFS 316
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.7 bits (86), Expect = 0.035 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T DLE F FG I + + ++ +AF++FE Sbjct: 236 KPPENV-----LFVCKLNPVTTD-EDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA 431 +E+ KA + DR I V+++ Sbjct: 290 KEEDCEKAFFKMDNVLIDDRRIHVDFS 316
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 37.7 bits (86), Expect = 0.035 Identities = 24/91 (26%), Positives = 43/91 (47%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ N + + + SD+E F +G+I + K FAFVQ+ + A A+ + Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 454 RVISVEYAFRDDSEPGDKYDRPSRGAGGYGR 362 +V+ + A +EP + +RG G R Sbjct: 78 QVLDINLA----AEP-----KVNRGKAGVKR 99
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 37.7 bits (86), Expect = 0.035 Identities = 24/91 (26%), Positives = 43/91 (47%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLD 455 +F+ N + + + SD+E F +G+I + K FAFVQ+ + A A+ + Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 454 RVISVEYAFRDDSEPGDKYDRPSRGAGGYGR 362 +V+ + A +EP + +RG G R Sbjct: 78 QVLDINLA----AEP-----KVNRGKAGVKR 99
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 37.7 bits (86), Expect = 0.035 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSD-LERHFGPFGRISNVRIRKNFAFVQFETQEEASKA 488 P V K K LFV N NT + LE+ F FG++ V+ K++AF+ F+ ++ A KA Sbjct: 331 PEVMAK-VKVLFVRNL--ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKA 387 Query: 487 LDATHLTKLLDRVISVEYAFRDDSE 413 ++ + L I + +A D + Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQK 412
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 37.7 bits (86), Expect = 0.035 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNV-----RIRKNFAFVQFETQEEASKALDATHL 470 +F +N + +V +L FGP RI V + F F+ FE +A A DA Sbjct: 109 VFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTG 168 Query: 469 TKLLDRVISVEYAFRDDSE---PGDKYDRPSRGAGGYGRQ 359 ++ R I V+Y+ + PG RPSR G R+ Sbjct: 169 MEVDGRRIRVDYSITQRAHTPTPGVYMGRPSRPLGRRSRE 208
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 37.4 bits (85), Expect = 0.046 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIR-------KNFAFVQFETQEEASKALDAT 476 LFV N D + LE F P+G I++ ++ K F FV F T EEA+KA+ Sbjct: 323 LFVKNLDD-SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 381 Query: 475 HLTKLLDRVISVEYAFRDD 419 + + + + V A R D Sbjct: 382 NQQIVAGKPLYVAIAQRKD 400
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 37.4 bits (85), Expect = 0.046 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI-------RKNFAFVQFETQEEASK 491 + ++TLFV N P +T V +L+ F ++RI K A+V+F ++EA+K Sbjct: 321 RDSRTLFVKNI-PYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANK 376 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPGDK 401 AL+ ++ R I V++ G+K Sbjct: 377 ALEEKQGAEIEGRSIFVDFTGEKSQNSGNK 406 Score = 33.1 bits (74), Expect = 0.87 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 6/52 (11%) Frame = -2 Query: 568 FGRISNVRIRKN------FAFVQFETQEEASKALDATHLTKLLDRVISVEYA 431 F + +++RI +N FAF++F + E+A A+D+ + T++ R I +E++ Sbjct: 434 FEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFS 485 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = -2 Query: 559 ISNVRI--RKNFAFVQFETQEEASKALDATHLTKLLDRVISVE--YAFRDDSEPGDKYDR 392 I ++RI K F +V F ++EE KAL T K+L + +E AF + +K +R Sbjct: 263 IQDIRIGNSKKFGYVDFSSEEEVEKALKLTG-KKILGTEVKIEKAMAFDKNKTAENKKER 321 Query: 391 PSR 383 SR Sbjct: 322 DSR 324
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 37.4 bits (85), Expect = 0.046 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 286 IFVYNLSP-EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344 Query: 478 THLTKLLDRVISVEY 434 + +L +RV+ V + Sbjct: 345 LNGYRLGERVLQVSF 359
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 37.4 bits (85), Expect = 0.046 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV N P S L + FGPFG ++NV++ K F FV +EA+ A+ + Sbjct: 286 IFVYNLSP-EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344 Query: 478 THLTKLLDRVISVEY 434 + +L +RV+ V + Sbjct: 345 LNGYRLGERVLQVSF 359
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.046 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Frame = -2 Query: 607 NTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKLLDR 452 +TR +DL+ F PFG IS + + K+ FAF+ F +E+A++A+ Sbjct: 249 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 308 Query: 451 VISVEYA 431 +++VE+A Sbjct: 309 ILNVEWA 315
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.046 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Frame = -2 Query: 607 NTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKLLDR 452 +TR +DL+ F PFG IS + + K+ FAF+ F +E+A++A+ Sbjct: 249 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 308 Query: 451 VISVEYA 431 +++VE+A Sbjct: 309 ILNVEWA 315
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 37.4 bits (85), Expect = 0.046 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRK--------NFAFVQFET 509 P + PT +L+V + P T E+ F P G I ++RI + N+A+V F+ Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEK-FSPAGPILSIRICRDLITSGSSNYAYVNFQH 61 Query: 508 QEEASKALDATHLTKLLDRVISVEYAFRDDS 416 ++A ALD + + + + + ++ RD S Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQRDPS 92 Score = 32.0 bits (71), Expect = 1.9 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.4 bits (85), Expect = 0.046 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%) Frame = -2 Query: 634 LFVINFDP-INTRVSDLERHFGPFGRISNVR---------IRKNFAFVQFETQEEASKAL 485 +FV N DP ++ ++ L F FG I V K FAF+ F + E + AL Sbjct: 102 IFVGNLDPEVDEKL--LYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159 Query: 484 DATHLTKLLDRVISVEYAFRDDSE 413 +A + L +R I+V YAF+ DS+ Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSK 183
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 37.4 bits (85), Expect = 0.046 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIRKN-------FAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 DL+ F +G + V I K FAFVQF+ EA KAL ++ ++ R ++V++ Sbjct: 128 DLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDW 187 Query: 433 AFRDD 419 A D Sbjct: 188 AVAKD 192
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 37.0 bits (84), Expect = 0.061 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = -2 Query: 658 VNTKPTKTLFVINF------DPINTRVSDLERHFGPFGRISNVR--IRKNFAFVQFETQE 503 V KP LFV + + + V D + +GP + ++ +++ ++FVQF+ + Sbjct: 73 VRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTD 132 Query: 502 EASKALDATHLTKLLDRVISVEYA 431 +ASKAL T L R I +E A Sbjct: 133 DASKALSEAQNTILDGRHIRIERA 156
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 37.0 bits (84), Expect = 0.061 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Frame = -2 Query: 592 DLERHFGPFGRISNVRI-------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 DL+ F FG + V I + F FVQF+ EA KAL ++ ++ R ++V++ Sbjct: 128 DLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDW 187 Query: 433 AFRDD 419 A D Sbjct: 188 AVAKD 192
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.0 bits (84), Expect = 0.061 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P D+ F FG++ +VR+ K F AFV+F EA A+D LL Sbjct: 720 PFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGVHLLG 779 Query: 454 RVISVEYAFRDDSE 413 R + ++YA ++ + Sbjct: 780 RRLVMQYAEQESDD 793
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 36.6 bits (83), Expect = 0.079 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRV-----------SDLERHFGPFGRISNVRI--RKNFAFVQF 515 N +P + L + DP+NT V DL+ F PFGRI N++I K FVQ+ Sbjct: 282 NRQPNQDL--CSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQY 339 Query: 514 ETQEEASKALD 482 + A KA++ Sbjct: 340 SEKSAAEKAIN 350
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 36.6 bits (83), Expect = 0.079 Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKN---FAFVQFE---TQEEASKALDATHLTKLLDR 452 P + +LE F FGRI V + + FAFV+++ E+A +ALD + + + R Sbjct: 11 PSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRAR 70 Query: 451 VISVEYAFRDDSEPGDKYDRPSRGAGGYGRQXXXXXXXXXXXXXXXXXXXXXYGRPVSPQ 272 V + G + RG G GR GR SP Sbjct: 71 V---------ELSTGQRRGGGGRGGGFGGR--------------------GGGGRDRSPY 101 Query: 271 YGAYGRSRSPVRD 233 G GRSRS RD Sbjct: 102 RGDRGRSRSRSRD 114
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 36.2 bits (82), Expect = 0.10 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKAL 485 +F+ N + + SD+E F +GR++ + K +AFVQ+ + A A+ Sbjct: 23 VFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAV 72
>CWC2_DEBHA (Q6BLU8) Pre-mRNA-splicing factor CWC2| Length = 339 Score = 36.2 bits (82), Expect = 0.10 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = -2 Query: 652 TKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDA 479 +K +TL++ + + L +HF FG I +R+ K AFV F T+ EA A +A Sbjct: 153 SKLNRTLYIGGLHMDDKMENTLTKHFQEFGSIDKIRVLHSKACAFVTFRTENEAQFAKEA 212 Query: 478 THLTKL-LDRVISVEYAFRDDSEPGDKYDR 392 L + V+++ +A D + + ++ Sbjct: 213 MQNQSLDGNEVLNIRWANEDPNPEAQRQEK 242
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 36.2 bits (82), Expect = 0.10 Identities = 21/78 (26%), Positives = 39/78 (50%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRDDSE 413 D+E F +G++S+V ++ F FV F+ Q +A A+ + +L + +E+ R Sbjct: 17 DVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVG- 75 Query: 412 PGDKYDRPSRGAGGYGRQ 359 Y+ G+G GR+ Sbjct: 76 ----YNEERSGSGFRGRE 89
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 35.8 bits (81), Expect = 0.13 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T+ DLE F FG+I + + ++ +AF++FE Sbjct: 244 KPPENV-----LFVCKLNPV-TQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFE 297 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA 431 +Q++ +A + D I V+++ Sbjct: 298 SQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3| Length = 432 Score = 35.8 bits (81), Expect = 0.13 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI----RKNFAFVQFETQEEASKALDA 479 PTK + + P + ++ H G + N ++ K A VQFE +EEA++AL Sbjct: 353 PTKMIHLSTL-PQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVC 411 Query: 478 THLTKLLDRVISVEYA 431 H T L +I + ++ Sbjct: 412 KHATSLGGSIIRISFS 427
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.4 bits (80), Expect = 0.18 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKNF-------AFVQFETQEEASKALDATHLTKLLD 455 P D+ F FG++ +VR+ K F AFV+F +EA A+D LL Sbjct: 746 PFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQLQGVHLLG 805 Query: 454 RVISVEYAFRDDSEPGDKYDRPSR 383 R + ++ A ++ + ++ +R ++ Sbjct: 806 RRLVMQPAEQEAANAEEELERMTK 829
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%) Frame = -2 Query: 577 FGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 FGPFG ++NV++ K F FV EEA+ A+ + + +L D+++ V + Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319 Score = 31.2 bits (69), Expect = 3.3 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 15/116 (12%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQ 518 Y++P L++ T+ D+E F FGRI N R+ + AF++ Sbjct: 95 YARPSSEVIKDANLYISGLPRTMTQ-KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153 Query: 517 FETQEEASKALDA--THLTKLLDRVISVEYAFRDDSEP-----GDKYDRPSRGAGG 371 F+ + EA +A+ + H I+V++A + Y P+R GG Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG 209
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 35.0 bits (79), Expect = 0.23 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%) Frame = -2 Query: 610 INTRVSD--LERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKL 461 +NT ++ LE FG +GRI V + K+ FAFV FE+ +A A + L Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSL 74 Query: 460 LDRVISVEYAFRDDSEPGDKYDRP---SRG 380 + I VE A + E G + P SRG Sbjct: 75 DGKAIKVEQATKPSFESGRRGPPPPPRSRG 104
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 35.0 bits (79), Expect = 0.23 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI-------RKNFAFVQFETQEEASKALD 482 + L+V N D T L+++F G I+N++I N+AFV++ +A+ AL Sbjct: 74 RVLYVGNLDKAITE-DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 132 Query: 481 ATHLTKLLDRVISVEYAFRDDSEPGD 404 + ++ + ++ + +AF+ D Sbjct: 133 TLNGKQIENNIVKINWAFQSQQSSSD 158
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 35.0 bits (79), Expect = 0.23 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 L F PFG I+++++ + FAF+++E E+A+ A+D + ++L R I V Sbjct: 22 LNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNL 81 Query: 433 A 431 A Sbjct: 82 A 82
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 34.7 bits (78), Expect = 0.30 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKAL 485 NT PT T + T L F PFG I NVRI KN FV+FE + +A ++ Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASI 412
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 34.7 bits (78), Expect = 0.30 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIR--------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 D+ F +G I N+ + K + V++ET +EA A++ + L+ + ISV+ Sbjct: 88 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147 Query: 436 YAF 428 + F Sbjct: 148 WCF 150
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 34.7 bits (78), Expect = 0.30 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIR--------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 D+ F +G I N+ + K + V++ET +EA A++ + L+ + ISV+ Sbjct: 88 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147 Query: 436 YAF 428 + F Sbjct: 148 WCF 150
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 34.7 bits (78), Expect = 0.30 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Frame = -2 Query: 595 SDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISV 440 ++LER F FG + + +I + F FV F+ ++ A+D + +L R I+V Sbjct: 20 AELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITV 79 Query: 439 EYAFRDDSEPGDKYDRPSRGAGGYG 365 A G RG GGYG Sbjct: 80 NEAQSRGGGGGG-----GRGGGGYG 99
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 34.7 bits (78), Expect = 0.30 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVS--DLERHFGPFGRISNVRI--------RKNFAFV 521 S V+T+ ++ F + ++ +++ D++ F PFGRIS+ R+ K + FV Sbjct: 93 SSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152 Query: 520 QFETQEEASKALDATHLTKLLDRVISVEYAFRDDSEPGDKYD 395 F + +A A+ L R I +A R P Y+ Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 194 Score = 32.3 bits (72), Expect = 1.5 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKLLDRVI 446 + + F PFG+I +R+ K ++FV+F + E A+ A+ + + T + V+ Sbjct: 230 MRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 34.7 bits (78), Expect = 0.30 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKLLDRVI 446 + + F PFG+I +R+ K ++FV+F T E A+ A+ + + T + V+ Sbjct: 221 MRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV + P T D++ F PFG+IS+ R+ K + FV F + +A A+ Sbjct: 99 VFVGDLSPEIT-TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157 Query: 478 THLTKLLDRVISVEYAFRDDSEP 410 L R I +A R P Sbjct: 158 MGGQWLGGRQIRTNWATRKPPAP 180
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 34.7 bits (78), Expect = 0.30 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKLLDRVI 446 + + F PFG+I +R+ K ++FV+F T E A+ A+ + + T + V+ Sbjct: 238 MRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV + P T D++ F PFG+IS+ R+ K + FV F + +A A+ Sbjct: 116 VFVGDLSPEIT-TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174 Query: 478 THLTKLLDRVISVEYAFRDDSEP 410 L R I +A R P Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAP 197
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 34.7 bits (78), Expect = 0.30 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFE---T 509 +T P +T+F+ P + +L+++F FG I +RI K +AF+ F+ + Sbjct: 102 DTDPYRTIFIGRL-PYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPIS 160 Query: 508 QEEASKALDATHLTKLLDRVISVEYAFRDDSEPGD--KYDRPSRGAGGYG 365 + A K + ++ DR+ V D E G KY +P R GG G Sbjct: 161 SKMAFKEIGVHRGIQIKDRICIV------DIERGRTVKYFKPRRLGGGLG 204
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 34.3 bits (77), Expect = 0.39 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = -2 Query: 643 TKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTK 464 T LF+ N D T+ ++L F +G + + KN+ FV ET+++ A+ + Sbjct: 6 TFKLFIGNLDE-KTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 463 LLDRVISVEYA 431 L + I VE A Sbjct: 65 LNEFAIKVEAA 75
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 34.3 bits (77), Expect = 0.39 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDA 479 +FV + P T D++ F PFGRIS+ R+ K + FV F + +A A+ Sbjct: 108 VFVGDLSPEIT-TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 478 THLTKLLDRVISVEYAFRDDSEPGDKYD 395 L R I +A R P Y+ Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYE 194 Score = 32.3 bits (72), Expect = 1.5 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = -2 Query: 589 LERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDATHLTKLLDRVI 446 + + F PFG+I +R+ K ++FV+F + E A+ A+ + + T + V+ Sbjct: 230 MRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVV 279
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 34.3 bits (77), Expect = 0.39 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%) Frame = -2 Query: 577 FGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISVEY 434 FGPFG ++NV++ K F FV EE++ A+ + + +L D+++ V + Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSF 319 Score = 31.2 bits (69), Expect = 3.3 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 15/116 (12%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQ 518 Y++P L++ T+ D+E F FGRI N R+ + AF++ Sbjct: 95 YARPSSEVIKDANLYISGLPRTMTQ-KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153 Query: 517 FETQEEASKALDA--THLTKLLDRVISVEYAFRDDSEP-----GDKYDRPSRGAGG 371 F+ + EA +A+ + H I+V++A + Y P+R GG Sbjct: 154 FDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGG 209
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 34.3 bits (77), Expect = 0.39 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Frame = -2 Query: 577 FGPFGRISNVRI------RKNFAFVQFETQEEASKALDATHLTKLLDRVISV 440 F FG I + ++ K +AFV FETQE A KA++ + L DR + V Sbjct: 119 FSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170 Score = 32.3 bits (72), Expect = 1.5 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 6/41 (14%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKAL 485 L + F PFG I++ ++ K F FV F + EEA+KA+ Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 33.9 bits (76), Expect = 0.51 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Frame = -2 Query: 601 RVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAF-- 428 R D+ER F +G+I V ++ + FV+F+ +A A+ + L + VE+A Sbjct: 14 RERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGP 73 Query: 427 RDDSEPGDKYDRPSRGAGGYG 365 R D G G GYG Sbjct: 74 RRDGSYGS-------GRSGYG 87
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 33.9 bits (76), Expect = 0.51 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Frame = -2 Query: 601 RVSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAF-- 428 R D+ER F +G+I V ++ + FV+F+ +A A+ + L + VE+A Sbjct: 14 RERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGP 73 Query: 427 RDDSEPGDKYDRPSRGAGGYG 365 R D G G GYG Sbjct: 74 RRDGSYGS-------GRSGYG 87
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 33.5 bits (75), Expect = 0.67 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Frame = -2 Query: 589 LERHFGPFGRISNVRIRKN-------FAFVQFETQEEASKALDATHLTKLLDRVISVEYA 431 L HF G +++V++ + F FV + +++EA +ALD + T + IS+E A Sbjct: 18 LREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDYFNRTFIDTSRISIELA 77 Query: 430 FRDDSEP-----GDKYDRPSRGAGGYG 365 + E ++ +R + GAG G Sbjct: 78 KKIGDEELVHQREERRNRRNAGAGPEG 104
>BMR1B_CHICK (Q05438) Bone morphogenetic protein receptor type IB precursor (EC| 2.7.11.30) (Serine/threonine-protein kinase receptor R6) (SKR6) (Activin receptor-like kinase 6) (ALK-6) (RPK-1) Length = 502 Score = 33.5 bits (75), Expect = 0.67 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 19/79 (24%) Frame = +1 Query: 247 SCSCHMHHTEDSL---------------DDHSQD*VVTFGTLG*QNGDMNCHPAFHNHQH 381 SC CH H EDS+ +D S +VT G LG + D C HQ Sbjct: 31 SCQCHHHCPEDSVNSTCSTDGYCFTIIEEDDSGGHLVTKGCLGLEGSDFQCRDTPIPHQR 90 Query: 382 LYLACHT----CHLVHYHP 426 + C T C+ H HP Sbjct: 91 RSIECCTGQDYCN-KHLHP 108
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 33.5 bits (75), Expect = 0.67 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDP-INTRVSDLERHFGPFGRISNVRI------RKNFAFVQFETQ 506 P + +F+ N D I+ + L F FG I + ++ K + FV FETQ Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKA--LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 148 Query: 505 EEASKALDATHLTKLLDRVISV 440 E A +A+D + L DR + V Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170 Score = 32.0 bits (71), Expect = 1.9 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 33.5 bits (75), Expect = 0.67 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDP-INTRVSDLERHFGPFGRISNVRI------RKNFAFVQFETQ 506 P + +F+ N D I+ + L F FG I + ++ K + FV FETQ Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKA--LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 148 Query: 505 EEASKALDATHLTKLLDRVISV 440 E A +A+D + L DR + V Sbjct: 149 EAAERAIDKMNGMLLNDRKVFV 170 Score = 31.2 bits (69), Expect = 3.3 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 33.5 bits (75), Expect = 0.67 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = -2 Query: 538 KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRDDSE 413 K +AF+ F + + + A++A + L +R I+V YAF+ DS+ Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 33.5 bits (75), Expect = 0.67 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 8/88 (9%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQF 515 ++P + T+ TK +FV +NT V D++++F FG++ + + + F FV F Sbjct: 100 AQPKMVTR-TKKIFVGGLS-VNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 514 ETQEEASKALDATHLTKLLDRVISVEYA 431 E+++ K + H ++ ++++ + A Sbjct: 158 ESEDIVEKVCE-IHFHEINNKMVECKKA 184
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 33.1 bits (74), Expect = 0.87 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKAL 485 K++F+ N D N+ + ++E HF G+I I +KNFA+++F+ AL Sbjct: 101 KSVFIGNVD-FNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 159
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 33.1 bits (74), Expect = 0.87 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 13/97 (13%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKN----FAFVQFETQEEASKALDATHLTKLLDRVI 446 P + R ++E F +GRI V I+ FAFV+FE +A A+ A + R I Sbjct: 17 PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76 Query: 445 SVEY---------AFRDDSEPGDKYDRPSRGAGGYGR 362 VE+ R + GD RG G GR Sbjct: 77 RVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGR 113
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 33.1 bits (74), Expect = 0.87 Identities = 14/36 (38%), Positives = 26/36 (72%) Frame = -2 Query: 538 KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYA 431 K +AFV+F T E+A +AL++ + T++ R I +E++ Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFS 533 Score = 33.1 bits (74), Expect = 0.87 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = -2 Query: 538 KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGG 371 K A+++F+T+ EA KAL+ T++ R + ++Y G+K + S+ GG Sbjct: 408 KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT-------GEKSQQESQKGGG 456
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 33.1 bits (74), Expect = 0.87 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%) Frame = -2 Query: 607 NTRVSDLERHFGPFGRISNVRIRKN---FAFVQFETQEEASKAL 485 N ++LER FG +G + +V + +N FAFV+FE +A+ A+ Sbjct: 20 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAV 63
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 33.1 bits (74), Expect = 0.87 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%) Frame = -2 Query: 607 NTRVSDLERHFGPFGRISNVRIRKN---FAFVQFETQEEASKAL 485 N ++LER FG +G + +V + +N FAFV+FE +A+ A+ Sbjct: 20 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAV 63
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 33.1 bits (74), Expect = 0.87 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Frame = -2 Query: 592 DLERHFGPFGRISNVRIRKN---FAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRD 422 ++E F +G + NV + +N FAFV+FE + +A A T+ LD R Sbjct: 26 EIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDA------TRALDGTRCCGTRIRV 79 Query: 421 DSEPGDKYDRPSRGAGG 371 + G DR RG GG Sbjct: 80 EMSSGRSRDR-RRGEGG 95
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 33.1 bits (74), Expect = 0.87 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Frame = -2 Query: 655 NTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIR--------KNFAFVQFETQEE 500 N T V N P +L FG GR+ + I K FAFV FE++++ Sbjct: 171 NRSDENTCRVTNL-PQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229 Query: 499 ASKALDATHLTKLLDRVISVEY 434 A++A+ + ++ V+ VE+ Sbjct: 230 AARAIAELNDIRMYHMVLKVEW 251
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 33.1 bits (74), Expect = 0.87 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%) Frame = -2 Query: 610 INTRVSD--LERHFGPFGRISNVRIRKN--------FAFVQFETQEEASKALDATHLTKL 461 +NT ++ LE FG +GRI + + K+ FAFV FE+ +A + L Sbjct: 15 LNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSL 74 Query: 460 LDRVISVEYAFRDDSEPGDKYDRP---SRG 380 + I VE A + E G + P SRG Sbjct: 75 DGKAIKVEQATKPSFESGRRGPPPPPRSRG 104 Score = 30.4 bits (67), Expect = 5.7 Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Frame = -2 Query: 439 EYAFRDDSEPGDKYDRPSRGAG---GYGRQXXXXXXXXXXXXXXXXXXXXXYGRPVSPQY 269 +Y +RD S + D PSRG G GYGR G Y Sbjct: 237 DYTYRDYSHSSSRDDYPSRGYGDRDGYGRD--------------REYSDHPSGGSYRDSY 282 Query: 268 GAYGRSRS--PVRDXXXXXXXXXXXXXXXPNRRGYD*SR 158 +YG SRS P R +R GY SR Sbjct: 283 ESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSR 321
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 33.1 bits (74), Expect = 0.87 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQF 515 ++P + T+ TK +FV +NT V D++ +F FG++ + + + F FV F Sbjct: 100 AQPKMVTR-TKKIFVGGLS-VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 514 ETQEEASKALDATHLTKLLDRVISVEYA 431 E+++ K + H ++ ++++ + A Sbjct: 158 ESEDIVEKVCE-IHFHEINNKMVECKKA 184
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 33.1 bits (74), Expect = 0.87 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Frame = -2 Query: 670 SKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQF 515 ++P + T+ TK +FV +NT V D++ +F FG++ + + + F FV F Sbjct: 100 AQPKMVTR-TKKIFVGGLS-VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 514 ETQEEASKALDATHLTKLLDRVISVEYA 431 E+++ K + H ++ ++++ + A Sbjct: 158 ESEDIVEKVCE-IHFHEINNKMVECKKA 184
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 32.7 bits (73), Expect = 1.1 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN----FAFVQFE---TQEEASK 491 K T+TLF+ N + T +L HF FG I + I+K +AF Q+ + +A + Sbjct: 653 KSTRTLFIGNLEKDIT-AGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMR 711 Query: 490 ALDATHL 470 +D HL Sbjct: 712 KMDGEHL 718
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T+ DL+ F FG I + + ++ +AF++FE Sbjct: 244 KPPENV-----LFVCKLNPV-TQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFE 297 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA 431 Q++ +A + D I V+++ Sbjct: 298 NQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F P+G I++ ++ K F FV F + EEA+KA +T++ R++S + Sbjct: 310 LRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKA-----VTEMNGRIVSTK 361
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F P+G I++ ++ K F FV F + EEA+KA +T++ R++S + Sbjct: 310 LRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKA-----VTEMNGRIVSTK 361
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKAL 485 +++FV N D L +HFG G I VRI K FA+VQF + SKAL Sbjct: 228 RSVFVGNLD-FEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKAL 286
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSD--LERHFGPFGRISNVRIR--------KNFAFVQFETQEEA 497 P++ LFV N ++ V+D L +HF G I +R+ K FAF+ F+ +E + Sbjct: 237 PSRILFVGN---LSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGS 293 Query: 496 SKALDATHLTKLLDRVISVEY 434 + L K+ R + +EY Sbjct: 294 TNELKDKSCRKIAGRPLRMEY 314
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F PFG I++ ++ K F FV F + EEA+KA +T++ R+++ + Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVATK 361
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKAL 485 K++F+ N D N+ + ++E HF G I I +KNFA+++F+ AL Sbjct: 61 KSVFIGNVD-FNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 119
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 32.3 bits (72), Expect = 1.5 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 8/87 (9%) Frame = -2 Query: 667 KPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQFE 512 KPP N LFV +P+ T+ DL F FG I + + ++ +AF++FE Sbjct: 244 KPPENV-----LFVCKLNPV-TQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFE 297 Query: 511 TQEEASKALDATHLTKLLDRVISVEYA 431 Q++ +A + D I V+++ Sbjct: 298 NQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 32.3 bits (72), Expect = 1.5 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 8/60 (13%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKAL 485 +++FV N D S L +HF P G I VRI K FA+VQF+ + SKAL Sbjct: 359 RSVFVGNLDFEEVEES-LWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKAL 417
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKN-----FAFVQFETQEEASKAL 485 P + R DLE F +GRI + ++ FAFV+FE +A A+ Sbjct: 22 PTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKN-----FAFVQFETQEEASKAL 485 P + R DLE F +GRI + ++ FAFV+FE +A A+ Sbjct: 22 PTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y++P + L+V N P +LE+ FG +G I I ++ AFV+ Sbjct: 177 YARPGGESIKDTNLYVTNL-PRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVR 235 Query: 517 FETQEEASKALDA 479 F +EEA +A+ A Sbjct: 236 FNKREEAQEAISA 248
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 Y++P + L+V N P +LE+ FG +G I I ++ AFV+ Sbjct: 160 YARPGGESIKDTNLYVTNL-PRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218 Query: 517 FETQEEASKALDA 479 F +EEA +A+ A Sbjct: 219 FNKREEAQEAISA 231
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Frame = -2 Query: 604 TRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATH 473 T S L HF PFG I ++ + K AFV+F +A +A++ H Sbjct: 36 TSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMH 87
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 32.0 bits (71), Expect = 1.9 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%) Frame = -2 Query: 646 PTKTLFVINF-DPINTRVSDLERHFGPFGRI---------SNVRIRKNFAFVQFETQEEA 497 P LF+ N D I++ L + F FG++ SN +++ A+V FE E+A Sbjct: 106 PIAKLFIKNLADSIDS--DQLVKIFNKFGKLIREPEIFYLSNGKLK--CAYVYFEDFEKA 161 Query: 496 SKALDATHLTKLLDRVISVEYAFRDDSEPGDKY 398 A+ + + + + I+V+YAF+++ + KY Sbjct: 162 DLAIKSLNNQLVANNRITVDYAFKENGKGNAKY 194
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = -2 Query: 613 PINTRVSDLERHFGPFGRISNVRIRKN-----FAFVQFETQEEASKAL 485 P + R DLE F +GRI + ++ FAFV+FE +A A+ Sbjct: 23 PSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 70
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%) Frame = -2 Query: 640 KTLFVINFDPINTRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKAL 485 +++FV N D S L +HF P G I VRI K FA+VQF+ + +KAL Sbjct: 279 RSIFVGNLDFEEIEES-LWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKAL 337
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 31.6 bits (70), Expect = 2.5 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN-------FAFVQFETQEEASK 491 + T+ L+V N P N R + HF +GR+ +V+I AFV F + A K Sbjct: 3 RETRHLWVGNL-PENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQK 61 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPG 407 A ++ + K+ DR + +Y +EPG Sbjct: 62 AHNS--VNKMGDRDLRTDY-----NEPG 82
>BMR1B_MOUSE (P36898) Bone morphogenetic protein receptor type IB precursor (EC| 2.7.11.30) (Serine/threonine-protein kinase receptor R6) (SKR6) (Activin receptor-like kinase 6) (ALK-6) Length = 502 Score = 31.6 bits (70), Expect = 2.5 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 15/66 (22%) Frame = +1 Query: 250 CSCHMHHTEDSL---------------DDHSQD*VVTFGTLG*QNGDMNCHPAFHNHQHL 384 C CH H EDS+ +D S VVT G LG + D C HQ Sbjct: 32 CKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGMPVVTSGCLGLEGSDFQCRDTPIPHQRR 91 Query: 385 YLACHT 402 + C T Sbjct: 92 SIECCT 97
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 31.6 bits (70), Expect = 2.5 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 9/65 (13%) Frame = -2 Query: 577 FGPFGRISNVRIR-------KNFAFVQFETQEEASKALDATHLTKLLDRVISVEY--AFR 425 F FG +++ ++ + F F+ F+++EEA AL+ H + + I+VE+ +F Sbjct: 22 FAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRITVEFCKSFG 81 Query: 424 DDSEP 410 D S+P Sbjct: 82 DPSKP 86
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 31.6 bits (70), Expect = 2.5 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN-------FAFVQFETQEEASK 491 + T+ L+V N P N R + HF +GR+ +V+I AFV F + A K Sbjct: 3 RETRHLWVGNL-PENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQK 61 Query: 490 ALDATHLTKLLDRVISVEYAFRDDSEPG 407 A ++ + K+ DR + +Y +EPG Sbjct: 62 AHNS--VNKMGDRDLRTDY-----NEPG 82
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 31.2 bits (69), Expect = 3.3 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR------KNFAFVQFETQEEASKALDATHLTKLLDRVISVE 437 L + F P+G I++ ++ K F FV F + EEA+KA +T++ R++S + Sbjct: 310 LRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKA-----VTEMNGRIVSTK 361
>BMR1B_HUMAN (O00238) Bone morphogenetic protein receptor type IB precursor (EC| 2.7.11.30) (CDw293 antigen) Length = 502 Score = 31.2 bits (69), Expect = 3.3 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 15/66 (22%) Frame = +1 Query: 250 CSCHMHHTEDSL---------------DDHSQD*VVTFGTLG*QNGDMNCHPAFHNHQHL 384 C CH H EDS+ +D S VVT G LG + D C HQ Sbjct: 32 CKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGLPVVTSGCLGLEGSDFQCRDTPIPHQRR 91 Query: 385 YLACHT 402 + C T Sbjct: 92 SIECCT 97
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 30.8 bits (68), Expect = 4.3 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Frame = -2 Query: 604 TRVSDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRV 449 T DL+R F FG + + +I + F FV F+ ++ A++ + +L RV Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRV 76 Query: 448 ISVEYAFRDDSEPGDKYDRPSRGAGGYG 365 I+V A SRG+GG G Sbjct: 77 ITVNEA-------------QSRGSGGGG 91
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 30.8 bits (68), Expect = 4.3 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Frame = -2 Query: 661 PVNTKPTKTLFVINFDPINTRVSDLERHF---GPFGRISNVRIR----KNFAFVQFETQE 503 P + +T+FV N + R L F GP +++ + R K+F FV F+ E Sbjct: 3 PAQEEADRTVFVGNLEA-RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPE 61 Query: 502 EASKALDATHLTKLLDRVISVEYAFRD--DSEPGDK 401 S A+ + +L R I+V+Y F SEP ++ Sbjct: 62 SVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQ 97
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 30.8 bits (68), Expect = 4.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR-------KNFAFVQFETQEEASKALDA 479 L+ F P+G+I++ ++ K F FV FET E A A+ A Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 30.4 bits (67), Expect = 5.7 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Frame = -2 Query: 673 YSKPPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKN--------FAFVQ 518 + +PP + K LFV N P + L R F G + + N F FV Sbjct: 129 FQEPPEDAK----LFVGNL-PYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVT 183 Query: 517 FETQEEASKALDATHLTKLLDRVISVEYAFRDDSEPGDKYDRPSR 383 T EEA KA++ + + R+++V A R G++ +RP R Sbjct: 184 MSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR----RGERPERPPR 224
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 30.4 bits (67), Expect = 5.7 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 20/116 (17%) Frame = -2 Query: 649 KPTKTLFVINFDPINTRVSDLERHFGPFGRISNV-----RIRKN---FAFVQFETQEEAS 494 K + TL+V N T + F G + + +++K F FV++ T+ +A Sbjct: 29 KQSCTLYVGNLSFYTTE-EQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAG 87 Query: 493 KALDATHLTKLLDRVISVEY--AFRDDSEPG---------DKYDRP-SRGAGGYGR 362 A+ + T+L DR++ ++ F++ + G D+Y + G GGYG+ Sbjct: 88 TAMRFINGTRLDDRIVRTDWDAGFKEGRQYGRGKSGGQVRDEYRQDYDAGRGGYGK 143
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 30.4 bits (67), Expect = 5.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -2 Query: 538 KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYA 431 + FAFV+FE E+A A+D + +++ R I V A Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = -2 Query: 589 LERHFGPFGRISNVRIR-------KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYA 431 L+ F FG I++ +I K F FV + T EEA+KA+ + L + + V A Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439 Query: 430 FRDD 419 R + Sbjct: 440 QRKE 443
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 30.0 bits (66), Expect = 7.4 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = -2 Query: 577 FGPFGRISNVRIR-------KNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRDD 419 F FG I + ++ K + FVQFE +E A A+D + + D+ + V + R Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ 215 Query: 418 SEPGDK 401 D+ Sbjct: 216 ERARDE 221
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 30.0 bits (66), Expect = 7.4 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = -2 Query: 646 PTKTLFVINFDPINTRVSDLERHFGPFGRISNVRIRKNFAFVQFETQE 503 P+K LFV N P N + L++ F PF +++ I KN+AFV E + Sbjct: 2 PSK-LFVGNL-PDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDD 47
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI---RKNFAFVQFETQEEAS 494 P V P + +N P T L F F VR+ R + AFV+FE +A Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 201 Query: 493 KALDATHLTKLL-DRVISVEYA 431 A DA K+ + + YA Sbjct: 202 AARDALQGFKITPSHAMKITYA 223
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Frame = -2 Query: 664 PPVNTKPTKTLFVINFDPINTRVSDLERHFGPFGRISNVRI---RKNFAFVQFETQEEAS 494 P V P + +N P T L F F VR+ R + AFV+FE +A Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 201 Query: 493 KALDATHLTKLL-DRVISVEYA 431 A DA K+ + + YA Sbjct: 202 AARDALQGFKITPSHAMKITYA 223
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 29.6 bits (65), Expect = 9.7 Identities = 16/59 (27%), Positives = 24/59 (40%) Frame = +1 Query: 259 HMHHTEDSLDDHSQD*VVTFGTLG*QNGDMNCHPAFHNHQHLYLACHTCHLVHYHP*RH 435 H HH E+ + H ++ + HP H+H H + H HL H+H H Sbjct: 78 HHHHPEEHHEPHHEE-------------HHHHHPHPHHHHHHHPPHHHHHLGHHHHHHH 123
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 29.6 bits (65), Expect = 9.7 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%) Frame = -2 Query: 634 LFVINFDPINTRVSDLERHFGPFGRISNVRIRKN-----FAFVQFETQEEASKALDATHL 470 ++V N P + R D+E F +G I ++ ++ FAFV+FE +A Sbjct: 18 IYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE-------- 68 Query: 469 TKLLDRVISVEYAFRDDSEPGDKYDRPSRGAGGYG 365 D V + D ++ R RGAGG G Sbjct: 69 ----DAVYGRDGYDYDGYRLRVEFPRSGRGAGGRG 99
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 11/90 (12%) Frame = -2 Query: 595 SDLERHFGPFGRISNVRI--------RKNFAFVQFETQEEASKALDATHLTKLLDRVISV 440 + L F +G + +I + F FV F T+E A++ + +L R I+V Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 439 EYAFRDDSE---PGDKYDRPSRGAGGYGRQ 359 A G Y G GGYGR+ Sbjct: 61 NEAQSRGGRGGGGGGGYGGGRGGGGGYGRR 90
>IF2_CHLMU (Q9PKU0) Translation initiation factor IF-2| Length = 896 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/80 (30%), Positives = 36/80 (45%) Frame = -2 Query: 598 VSDLERHFGPFGRISNVRIRKNFAFVQFETQEEASKALDATHLTKLLDRVISVEYAFRDD 419 V ++ FGP G+ N + K F ET+ A+ A + T T+ SVE A Sbjct: 173 VVSIKPKFGPTGKHINHLLAKTFKAPAKETKA-AAPAEETTQQTRP-----SVETASTKQ 226 Query: 418 SEPGDKYDRPSRGAGGYGRQ 359 +P RP++ A Y R+ Sbjct: 227 QQPSGTNTRPAQSAPAYRRE 246
>CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed with cdc5 protein| 2) (Pre-mRNA-processing protein 3) (Cell cycle control protein cwf2) Length = 388 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = -2 Query: 637 TLFVINFDPINTRVSDLERHFGPFGRISNVRI--RKNFAFVQFETQEEASKALDA-THLT 467 TL+V P + + RHF +G I +R+ + AF+ + + A A +A H + Sbjct: 175 TLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQS 234 Query: 466 KLLDRVISVEYAFRD 422 D ++V +A D Sbjct: 235 LDHDECLNVRWATTD 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,624,655 Number of Sequences: 219361 Number of extensions: 1803958 Number of successful extensions: 4634 Number of sequences better than 10.0: 166 Number of HSP's better than 10.0 without gapping: 4369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4607 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
