ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23n09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 230 bits (116), Expect = 5e-57 Identities = 191/216 (88%) Strand = Plus / Minus Query: 457 tttccccccatttcgcgggacggaatggccttcttgcattgagacaggatattgatgcaa 516 ||||| |||||||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 304 tttcctcccatttctcgggaaggtatggccttcttgcattgagcgaggatcttgatgcaa 245 Query: 517 tcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgagcaggtggaatg 576 || ||||| ||||||||||| ||||||||||| ||||||| | ||||| ||||| | | Sbjct: 244 tcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgggacg 185 Query: 577 gcatggaataggtcaccagcaacatagttaacgataccatcacttggaactttctcgatc 636 | |||||| ||||||||||| ||||||||||| | |||||||||||| |||||||||||| Sbjct: 184 gtatggaagaggtcaccagcgacatagttaacaacaccatcacttgggactttctcgatc 125 Query: 637 accttcggaaggtccaacacattgcacttgatatgc 672 ||||| |||||||||||||||||||||||||||||| Sbjct: 124 acctttggaaggtccaacacattgcacttgatatgc 89 Score = 167 bits (84), Expect = 6e-38 Identities = 141/160 (88%) Strand = Plus / Minus Query: 248 cttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgc 307 ||||||||||||||||||||| ||||||| || |||||||||||||||||||||| || Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454 Query: 308 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgccgtccttttg 367 |||| |||||||| |||||||| |||||||| || |||||||| |||||||||||| | | Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394 Query: 368 tacataccaacatgagcatatccatcaacagttcggtttc 407 |||||| ||||| ||||| ||||||| |||||||||||| Sbjct: 393 tacatatgaacatcagcatgtccatcagcagttcggtttc 354
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 75.8 bits (38), Expect = 2e-10 Identities = 152/190 (80%) Strand = Plus / Minus Query: 478 ggaatggccttcttgcattgagacaggatattgatgcaatcttcgtcactccagaagtgc 537 ||||||||||| |||| |||| || ||| || | |||||| || || |||||| |||| Sbjct: 925 ggaatggcctttctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgc 866 Query: 538 agaacaagcttaagcatgagaacttgagcaggtggaatggcatggaataggtcaccagca 597 | |||||||| ||||| | ||||||| ||||| | || ||||| | |||||| ||| Sbjct: 865 aatacaagcttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgca 806 Query: 598 acatagttaacgataccatcacttggaactttctcgatcaccttcggaaggtccaacaca 657 ||||||||||||| ||||||| | || | || ||||||||||| |||||||||| |||| Sbjct: 805 acatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcaca 746 Query: 658 ttgcacttga 667 ||||||||| Sbjct: 745 gtgcacttga 736 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 1102 tcattgaatcctgcttt 1086 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 1062 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1012
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 75.8 bits (38), Expect = 2e-10 Identities = 152/190 (80%) Strand = Plus / Minus Query: 478 ggaatggccttcttgcattgagacaggatattgatgcaatcttcgtcactccagaagtgc 537 ||||||||||| |||| |||| || ||| || | |||||| || || |||||| |||| Sbjct: 930 ggaatggcctttctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgc 871 Query: 538 agaacaagcttaagcatgagaacttgagcaggtggaatggcatggaataggtcaccagca 597 | |||||||| ||||| | ||||||| ||||| | || ||||| | |||||| ||| Sbjct: 870 aatacaagcttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgca 811 Query: 598 acatagttaacgataccatcacttggaactttctcgatcaccttcggaaggtccaacaca 657 ||||||||||||| ||||||| | || | || ||||||||||| |||||||||| |||| Sbjct: 810 acatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcaca 751 Query: 658 ttgcacttga 667 ||||||||| Sbjct: 750 gtgcacttga 741 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 1107 tcattgaatcctgcttt 1091 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 1067 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1017
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 73.8 bits (37), Expect = 7e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 256 tagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatcct 315 ||||||||||| | |||||| || ||||||||||||||||| || ||||||||||| ||| Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073 Query: 316 gcttt 320 ||||| Sbjct: 1072 gcttt 1068
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 588 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 647 |||||| |||||||||||||||| ||||||| | || | || ||||||||||| ||||| Sbjct: 119655 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 119596 Query: 648 gtccaacacattgcacttga 667 ||||| |||| ||||||||| Sbjct: 119595 gtccagcacagtgcacttga 119576 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414 Query: 314 ctgct 318 ||||| Sbjct: 64413 ctgct 64409 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 123109 tcattgaatcctgcttt 123093 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 123069 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 123019
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 588 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 647 |||||| |||||||||||||||| ||||||| | || | || ||||||||||| ||||| Sbjct: 5404 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 5345 Query: 648 gtccaacacattgcacttga 667 ||||| |||| ||||||||| Sbjct: 5344 gtccagcacagtgcacttga 5325 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 8858 tcattgaatcctgcttt 8842 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 8818 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 8768
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 588 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 647 |||||| |||||||||||||||| ||||||| | || | || ||||||||||| ||||| Sbjct: 11494133 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11494192 Query: 648 gtccaacacattgcacttga 667 ||||| |||| ||||||||| Sbjct: 11494193 gtccagcacagtgcacttga 11494212 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374 Query: 314 ctgct 318 ||||| Sbjct: 11549375 ctgct 11549379 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 11490679 tcattgaatcctgcttt 11490695 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 250 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 309 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945 Query: 310 aatcctgcttt 320 || |||||||| Sbjct: 11353946 aagcctgcttt 11353956 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 245 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580 Query: 305 cgctaaatcc 314 | || ||||| Sbjct: 7137581 cactgaatcc 7137590 Score = 50.1 bits (25), Expect = 0.010 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062 Query: 314 ctgct 318 ||||| Sbjct: 11352063 ctgct 11352067 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769 Score = 44.1 bits (22), Expect = 0.59 Identities = 58/70 (82%) Strand = Plus / Plus Query: 550 agcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacatagttaacg 609 ||||||| | ||||||||||||| ||||| |||| | |||||| || |||||||| || Sbjct: 11330877 agcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacatagttcacc 11330936 Query: 610 ataccatcac 619 | |||||||| Sbjct: 11330937 acaccatcac 11330946 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Plus Query: 631 tcgatcaccttcggaaggtccaacacattgcacttgat 668 |||||||||||||| ||||||| ||| |||||||||| Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgat 7138332 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 305 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 560 cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 608 ||||||||||||| | ||||| || | |||||| |||||||||||||| Sbjct: 7138221 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7138269 Score = 40.1 bits (20), Expect = 9.2 Identities = 44/52 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 588 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 647 |||||| |||||||||||||||| ||||||| | || | || ||||||||||| ||||| Sbjct: 11573322 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11573381 Query: 648 gtccaacacattgcacttga 667 ||||| |||| ||||||||| Sbjct: 11573382 gtccagcacagtgcacttga 11573401 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563 Query: 314 ctgct 318 ||||| Sbjct: 11628564 ctgct 11628568 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 244 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 303 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867 Query: 304 tcgctaaatcctgcttt 320 || | ||||||||||| Sbjct: 11569868 tcattgaatcctgcttt 11569884 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 250 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 309 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134 Query: 310 aatcctgcttt 320 || |||||||| Sbjct: 11433135 aagcctgcttt 11433145 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 245 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551 Query: 305 cgctaaatcc 314 | || ||||| Sbjct: 7203552 cactgaatcc 7203561 Score = 50.1 bits (25), Expect = 0.010 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251 Query: 314 ctgct 318 ||||| Sbjct: 11431252 ctgct 11431256 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 344 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 394 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958 Score = 44.1 bits (22), Expect = 0.59 Identities = 58/70 (82%) Strand = Plus / Plus Query: 550 agcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacatagttaacg 609 ||||||| | ||||||||||||| ||||| |||| | |||||| || |||||||| || Sbjct: 11410066 agcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacatagttcacc 11410125 Query: 610 ataccatcac 619 | |||||||| Sbjct: 11410126 acaccatcac 11410135 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Plus Query: 631 tcgatcaccttcggaaggtccaacacattgcacttgat 668 |||||||||||||| ||||||| ||| |||||||||| Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgat 7204303 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 305 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 560 cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 608 ||||||||||||| | ||||| || | |||||| |||||||||||||| Sbjct: 7204192 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7204240 Score = 40.1 bits (20), Expect = 9.2 Identities = 44/52 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 514 caatcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgagcaggtgga 573 ||||| |||||||||||| ||| || |||||||| ||||||| | ||||||||||||| Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847 Query: 574 atggcatggaataggtcaccagcaacatagttaacgataccatcac 619 ||||| |||| | |||||| || |||||||| || | |||||||| Sbjct: 846 atggcgcggaacatgtcacccgctacatagttcaccacaccatcac 801 Score = 40.1 bits (20), Expect = 9.2 Identities = 44/52 (84%) Strand = Plus / Minus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 1116
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 251 atggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcg 306 |||| ||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcg 1052 Score = 48.1 bits (24), Expect = 0.038 Identities = 48/56 (85%) Strand = Plus / Minus Query: 501 caggatattgatgcaatcttcgtcactccagaagtgcagaacaagcttaagcatga 556 |||||| |||| ||| || ||||| |||||||||||||| || ||||| ||||||| Sbjct: 854 caggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcatga 799
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 250 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 309 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303 Query: 310 aatcctgcttt 320 || |||||||| Sbjct: 140304 aagcctgcttt 140314 Score = 50.1 bits (25), Expect = 0.010 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 254 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 313 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420 Query: 314 ctgct 318 ||||| Sbjct: 138421 ctgct 138425 Score = 44.1 bits (22), Expect = 0.59 Identities = 58/70 (82%) Strand = Plus / Plus Query: 550 agcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacatagttaacg 609 ||||||| | ||||||||||||| ||||| |||| | |||||| || |||||||| || Sbjct: 117235 agcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacatagttcacc 117294 Query: 610 ataccatcac 619 | |||||||| Sbjct: 117295 acaccatcac 117304 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 305 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941 Score = 40.1 bits (20), Expect = 9.2 Identities = 44/52 (84%) Strand = Plus / Plus Query: 253 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 245 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 45034 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 44975 Query: 305 cgctaaatcc 314 | || ||||| Sbjct: 44974 cactgaatcc 44965 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 631 tcgatcaccttcggaaggtccaacacattgcacttgat 668 |||||||||||||| ||||||| ||| |||||||||| Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgat 44223 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Minus Query: 560 cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 608 ||||||||||||| | ||||| || | |||||| |||||||||||||| Sbjct: 44334 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 44286
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 245 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 304 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 50741 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 50800 Query: 305 cgctaaatcc 314 | || ||||| Sbjct: 50801 cactgaatcc 50810 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Plus Query: 631 tcgatcaccttcggaaggtccaacacattgcacttgat 668 |||||||||||||| ||||||| ||| |||||||||| Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgat 51552 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 560 cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 608 ||||||||||||| | ||||| || | |||||| |||||||||||||| Sbjct: 51441 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 51489
>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence Length = 217530 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Plus Query: 17 catacatatacccatacaactcacacca 44 |||||||||||||||||||| ||||||| Sbjct: 92220 catacatatacccatacaacccacacca 92247 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 catacatatacccatacaac 36 |||||||||||||||||||| Sbjct: 92193 catacatatacccatacaac 92212
>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence Length = 197907 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 ttacaaacttggtcattgccc 166 ||||||||||||||||||||| Sbjct: 98423 ttacaaacttggtcattgccc 98403
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 cgaggcacttggcacacaatc 248 ||||||||||||||||||||| Sbjct: 2961124 cgaggcacttggcacacaatc 2961104
>gb|AC168116.3| Mus musculus BAC clone RP24-108N24 from chromosome 1, complete sequence Length = 158847 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 115847 acatacatatacccatacaa 115828
>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108 patrial mRNA Length = 1493 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 agctcccagtttcttgacaa 295 |||||||||||||||||||| Sbjct: 441 agctcccagtttcttgacaa 460
>gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete sequence Length = 15915 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttcggtttctaatatttctt 418 |||||||||||||||||||| Sbjct: 3670 ttcggtttctaatatttctt 3689
>gb|AC117648.14| Mus musculus, clone RP23-254P23, complete sequence Length = 228273 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 228231 acatacatatacccatacaa 228250
>gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complete sequence Length = 184908 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 gacaggatattgatgcaatc 518 |||||||||||||||||||| Sbjct: 89926 gacaggatattgatgcaatc 89907
>emb|AL591622.6| Human DNA sequence from clone RP11-141L16 on chromosome 9, complete sequence Length = 89944 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tattgaaactaaagatacat 80 |||||||||||||||||||| Sbjct: 5621 tattgaaactaaagatacat 5602
>gb|AC137767.16| Homo sapiens 12 BAC RP13-942N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 86027 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atacatatacccatacaact 37 |||||||||||||||||||| Sbjct: 47695 atacatatacccatacaact 47714
>gb|AC137631.2| Homo sapiens 12 BAC RP11-1018F11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 55265 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atacatatacccatacaact 37 |||||||||||||||||||| Sbjct: 16975 atacatatacccatacaact 16994
>emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2 Length = 971 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 taagcatgagaacttgagca 567 |||||||||||||||||||| Sbjct: 290 taagcatgagaacttgagca 309
>emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA Length = 904 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 taagcatgagaacttgagca 567 |||||||||||||||||||| Sbjct: 291 taagcatgagaacttgagca 310
>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence Length = 133862 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 59299 acatacatatacccatacaa 59280
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 agctcccagtttcttgacaa 295 |||||||||||||||||||| Sbjct: 29313283 agctcccagtttcttgacaa 29313302
>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence Length = 151319 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 140132 acatacatatacccatacaa 140113
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 agctcccagtttcttgacaa 295 |||||||||||||||||||| Sbjct: 101972 agctcccagtttcttgacaa 101991
>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence Length = 98620 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 1204 acatacatatacccatacaa 1185
>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full insert sequence Length = 1493 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 agctcccagtttcttgacaa 295 |||||||||||||||||||| Sbjct: 441 agctcccagtttcttgacaa 460
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119034 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 atttctttggatgatgagcc 431 |||||||||||||||||||| Sbjct: 43678 atttctttggatgatgagcc 43659
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence Length = 1503 Score = 40.1 bits (20), Expect = 9.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 333 gctccagtcattttcatctcgttgccgtccttttgt 368 |||||| || |||||||||| |||||||||||||| Sbjct: 1040 gctccattctttttcatctctctgccgtccttttgt 1005
>gb|AC161367.4| Mus musculus BAC clone RP23-450F3 from chromosome 1, complete sequence Length = 188588 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 158515 acatacatatacccatacaa 158534
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds Length = 1438 Score = 40.1 bits (20), Expect = 9.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 333 gctccagtcattttcatctcgttgccgtccttttgt 368 |||||| || |||||||||| |||||||||||||| Sbjct: 1038 gctccattctttttcatctctctgccgtccttttgt 1003
>gb|AC153843.6| Mus musculus 10 BAC RP23-273P15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202968 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acatacatatacccatacaa 35 |||||||||||||||||||| Sbjct: 48112 acatacatatacccatacaa 48131
>emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 447 aacaataacctttccccccatttc 470 |||||||||||||||| ||||||| Sbjct: 17596 aacaataacctttcccaccatttc 17619
>emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chromosome 4, complete sequence Length = 191239 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 ccatcacttggaactttctc 632 |||||||||||||||||||| Sbjct: 149587 ccatcacttggaactttctc 149606 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,132,539 Number of Sequences: 3902068 Number of extensions: 6132539 Number of successful extensions: 112758 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112358 Number of HSP's gapped (non-prelim): 391 length of query: 672 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 649 effective length of database: 17,143,297,704 effective search space: 11126000209896 effective search space used: 11126000209896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
