Clone Name | rbasd24c09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146423.3| Pan troglodytes BAC clone RP43-25L18 from 7, complete sequence Length = 158864 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cctggggctgccgccgaggc 22 |||||||||||||||||||| Sbjct: 41181 cctggggctgccgccgaggc 41200
>gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromosome 7, complete sequence Length = 206418 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cctggggctgccgccgaggc 22 |||||||||||||||||||| Sbjct: 88254 cctggggctgccgccgaggc 88273
>gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section 94 of 121 of the complete plasmid sequence Length = 10943 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggctgccgccgaggcgcgtg 27 |||||||||||||||||||| Sbjct: 9575 ggctgccgccgaggcgcgtg 9594
>gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, complete sequence Length = 157813 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cctggggctgccgccgaggc 22 |||||||||||||||||||| Sbjct: 149823 cctggggctgccgccgaggc 149842
>emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chromosome Xp11.1-11.22 Contains the NUDT11 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 11, two novel genes, the NUDT10 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 10 and three CpG islands, complete sequence Length = 184873 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 acctggggctgccgccgaggcgcg 25 ||||| |||||||||||||||||| Sbjct: 103047 acctgtggctgccgccgaggcgcg 103024
>gb|AF222338.1|AF222338 Rattus norvegicus voltage gated N-type calcium channel alpha1B gene, partial cds, alternatively spliced Length = 6340 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 gaagccagcatgatgaaaggataa 89 ||||||||||||| |||||||||| Sbjct: 2259 gaagccagcatgaggaaaggataa 2282
>ref|NM_031131.1| Rattus norvegicus transforming growth factor, beta 2 (Tgfb2), mRNA Length = 2880 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 agaagccagcatgatgaaa 83 ||||||||||||||||||| Sbjct: 2619 agaagccagcatgatgaaa 2637
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 atgaaaggataatgcagca 96 ||||||||||||||||||| Sbjct: 65364 atgaaaggataatgcagca 65382
>gb|AF153013.1|AF153013 Rattus norvegicus TGF-beta 2 short form precursor (TGF-beta2) mRNA, complete cds Length = 2796 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 agaagccagcatgatgaaa 83 ||||||||||||||||||| Sbjct: 2535 agaagccagcatgatgaaa 2553
>gb|AF153012.2|AF153012 Rattus norvegicus TGF-beta 2 long form precursor (TGF-beta2) mRNA, complete cds Length = 2880 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 agaagccagcatgatgaaa 83 ||||||||||||||||||| Sbjct: 2619 agaagccagcatgatgaaa 2637 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 594,781 Number of Sequences: 3902068 Number of extensions: 594781 Number of successful extensions: 41104 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41089 Number of HSP's gapped (non-prelim): 15 length of query: 111 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 90 effective length of database: 17,151,101,840 effective search space: 1543599165600 effective search space used: 1543599165600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)