ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_481212.1| Oryza sativa (japonica cultivar-group), mRNA 248 2e-62
2ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group... 248 2e-62
3ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group... 248 2e-62
4dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
5dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
6dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
7gb|AY110166.1| Zea mays CL13480_1 mRNA sequence 222 1e-54
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
9dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
10gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 46 0.12
11gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome... 42 1.9
12gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete... 42 1.9
13emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chr... 42 1.9
14ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 7.6
15ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predict... 40 7.6
16gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.6
17gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 40 7.6
18gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete se... 40 7.6
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.6
20emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chro... 40 7.6
21emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chr... 40 7.6
22gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 7.6
23gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosom... 40 7.6
24emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A stra... 40 7.6
25gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 1... 40 7.6
26gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, com... 40 7.6
27gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswel... 40 7.6
28gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 7.6
29gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, comple... 40 7.6
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.6
31dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.6
32gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 7.6
33gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, comple... 40 7.6
34emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3... 40 7.6
35emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on ch... 40 7.6

>ref|XM_481212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1751

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1324

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005



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>dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H10, full
            insert sequence
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G12, full
            insert sequence
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||||
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttcc 1324

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            ||||| |||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcctgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005



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>dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full
            insert sequence
          Length = 1751

 Score =  240 bits (121), Expect = 4e-60
 Identities = 247/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 181  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 241  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 300
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 301  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 360
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 361  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
            | |||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatggggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 502
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 503  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>gb|AY110166.1| Zea mays CL13480_1 mRNA sequence
          Length = 1343

 Score =  222 bits (112), Expect = 1e-54
 Identities = 241/284 (84%)
 Strand = Plus / Plus

                                                                       
Query: 126 tgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactgcctcg 185
           ||||||||||||||||| |||||||||||||||||||| ||  | |||||||| || | |
Sbjct: 210 tgtgccaatgcgaagctgggagcgggctccaagtccttcaccacattcttcaccgcgttg 269

                                                                       
Query: 186 atgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcctctcc 245
           | ||| ||| ||  ||| || || |||||||| |  |  |||||||||||  || |  ||
Sbjct: 270 aggtcgatgtcgatcaggttccccgtcgccgaagatatgacggtgcagctgctcttgccc 329

                                                                       
Query: 246 tcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacacatggc 305
           || |||||||||||||||||||| ||||||||    || ||||||| |||||||||||||
Sbjct: 330 tccacgtatggcaggaacagccttgccttctctgccgacgagaacaacgccacacatggc 389

                                                                       
Query: 306 ttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccggcagag 365
           ||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 390 ttgtcgcgggcgttggcgagctgcacggcagcggtattggtcgcgacgacgccggcagag 449

                                                       
Query: 366 tcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 409
           ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 450 tcgttgatgaggcaggtgagctggcctggggtggtgatgaacag 493



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                            
Query: 300      catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 359
                ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 10626749 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 10626690

                                            
Query: 360      gcagagtcgttgatgaggcaggtgagct 387
                 | |||||||||||||||||||||||||
Sbjct: 10626689 acggagtcgttgatgaggcaggtgagct 10626662



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 121      atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
                ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 10627031 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 10626972

                                                                            
Query: 181      cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
                |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 10626971 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 10626912

                                                                          
Query: 241      tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 298
                ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 10626911 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 10626854



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 504      ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
                |||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 10626301 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 10626246



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 443      ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 494
                |||||| |||||| ||| ||| || ||||||||||||||| |||| ||||||
Sbjct: 10626482 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 10626431



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>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F05
          Length = 134247

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                         
Query: 300   catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 359
             ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 54389 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 54330

                                         
Query: 360   gcagagtcgttgatgaggcaggtgagct 387
              | |||||||||||||||||||||||||
Sbjct: 54329 acggagtcgttgatgaggcaggtgagct 54302



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 121   atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 180
             ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 54671 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 54612

                                                                         
Query: 181   cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 240
             |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 54611 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 54552

                                                                       
Query: 241   tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 298
             ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 54551 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 54494



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 504   ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 559
             |||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 53941 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 53886



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 443   ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 494
             |||||| |||||| ||| ||| || ||||||||||||||| |||| ||||||
Sbjct: 54122 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 54071



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 414     gccgtctcctcaccgacgatttcctcgatct 444
               ||||||||||| |||||||| ||||||||||
Sbjct: 4100230 gccgtctcctcgccgacgatgtcctcgatct 4100260



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>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence
          Length = 146418

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 373   tgaggcaggtgagctgtccaggagt 397
             ||||||| |||||||||||||||||
Sbjct: 92251 tgaggcatgtgagctgtccaggagt 92275



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>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence
          Length = 215914

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 373   tgaggcaggtgagctgtccaggagt 397
             ||||||| |||||||||||||||||
Sbjct: 27636 tgaggcatgtgagctgtccaggagt 27660



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>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete
              sequence
          Length = 179035

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 369    ttgatgaggcaggtgagctgtccag 393
              |||||||||||| ||||||||||||
Sbjct: 111080 ttgatgaggcagctgagctgtccag 111056



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>ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC615502 (LOC615502),
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 gaggcaggtgagctgtccag 393
           ||||||||||||||||||||
Sbjct: 78  gaggcaggtgagctgtccag 97



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>ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG05805.4) partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 cgagctggaccgcggcggtg 341
           ||||||||||||||||||||
Sbjct: 67  cgagctggaccgcggcggtg 48



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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    cgttggcgagctggaccgcg 335
              ||||||||||||||||||||
Sbjct: 619213 cgttggcgagctggaccgcg 619232



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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   cgatttcctcgatctcttct 449
             ||||||||||||||||||||
Sbjct: 65597 cgatttcctcgatctcttct 65578



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>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
          Length = 145002

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tgattttgattatgtttgtg 129
              ||||||||||||||||||||
Sbjct: 133271 tgattttgattatgtttgtg 133252



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gtcgcgggcgttggcgagct 327
               ||||||||||||||||||||
Sbjct: 4842546 gtcgcgggcgttggcgagct 4842527



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>emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chromosome 9 Contains the 5'
             end of the SMC2L1 gene for SMC2 structural maintenance of
             chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E) and a
             CpG island, complete sequence
          Length = 108821

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   ttgatgaggcaggtgagctg 388
             ||||||||||||||||||||
Sbjct: 64022 ttgatgaggcaggtgagctg 64041



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>emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chromosome 6 Contains a
            novel gene, a mitochondrial ribosomal protein L35
            (MRPL35) pseudogene and a CpG island, complete sequence
          Length = 108813

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  aacagaggcctcagcccatt 493
            ||||||||||||||||||||
Sbjct: 8393 aacagaggcctcagcccatt 8374



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    gcttgcttttcatgtctata 88
             ||||||||||||||||||||
Sbjct: 49874 gcttgcttttcatgtctata 49893



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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    gaggcaggtgagctgtccag 393
              ||||||||||||||||||||
Sbjct: 159761 gaggcaggtgagctgtccag 159742



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>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 6/7
          Length = 326301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aatggagacgatgattttga 118
             ||||||||||||||||||||
Sbjct: 33203 aatggagacgatgattttga 33184



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>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence
          Length = 223640

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    gcttgcttttcatgtctata 88
             ||||||||||||||||||||
Sbjct: 88033 gcttgcttttcatgtctata 88014



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>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence
          Length = 166869

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    cttctctgtgcctctcatgt 464
              ||||||||||||||||||||
Sbjct: 108642 cttctctgtgcctctcatgt 108623



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>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 171523

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     agcttgcttttcatgtctat 87
              ||||||||||||||||||||
Sbjct: 136623 agcttgcttttcatgtctat 136642



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      aatggagacgatgattttga 118
               ||||||||||||||||||||
Sbjct: 1623583 aatggagacgatgattttga 1623564



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>gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, complete sequence
          Length = 43877

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 385  gctgtccaggagtagtgatgaaca 408
            ||||| ||||||||||||||||||
Sbjct: 2649 gctgtgcaggagtagtgatgaaca 2626



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 167     tgccttcttcactgcctcgatgtc 190
               |||||||||||| |||||||||||
Sbjct: 1211703 tgccttcttcacggcctcgatgtc 1211680



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     gtcaatgccggccagcttgc 207
               ||||||||||||||||||||
Sbjct: 5024453 gtcaatgccggccagcttgc 5024434



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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      aatggagacgatgattttga 118
               ||||||||||||||||||||
Sbjct: 1171933 aatggagacgatgattttga 1171914



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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   gaggcaggtgagctgtccag 393
             ||||||||||||||||||||
Sbjct: 42289 gaggcaggtgagctgtccag 42270



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>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE
          Length = 138861

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  tgattttgattatgtttgtg 129
            ||||||||||||||||||||
Sbjct: 3710 tgattttgattatgtttgtg 3691



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>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete
             sequence
          Length = 208805

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gggctccaagtccttgactg 168
             ||||||||||||||||||||
Sbjct: 69120 gggctccaagtccttgactg 69139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,544,818
Number of Sequences: 3902068
Number of extensions: 4544818
Number of successful extensions: 98127
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97735
Number of HSP's gapped (non-prelim): 391
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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