Clone Name | rbasd23n07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481212.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1702 Score = 248 bits (125), Expect = 2e-62 Identities = 248/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001
>ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA Length = 1751 Score = 248 bits (125), Expect = 2e-62 Identities = 248/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001
>ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA Length = 1710 Score = 248 bits (125), Expect = 2e-62 Identities = 248/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1324 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1263 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005
>dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H10, full insert sequence Length = 1702 Score = 248 bits (125), Expect = 2e-62 Identities = 248/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001
>dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G12, full insert sequence Length = 1710 Score = 248 bits (125), Expect = 2e-62 Identities = 248/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| |||| Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttcc 1324 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 ||||| |||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1263 atggcctgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005
>dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full insert sequence Length = 1751 Score = 240 bits (121), Expect = 4e-60 Identities = 247/289 (85%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| | Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260 Query: 306 atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365 |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200 Query: 366 cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 | |||||||||||| |||||||||| || |||||||| ||||||||||| Sbjct: 1199 cggagtcgttgatggggcaggtgagttggccaggagtggtgatgaacag 1151 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | || Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058 Query: 508 gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 ||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001
>gb|AY110166.1| Zea mays CL13480_1 mRNA sequence Length = 1343 Score = 222 bits (112), Expect = 1e-54 Identities = 241/284 (84%) Strand = Plus / Plus Query: 131 tgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactgcctcg 190 ||||||||||||||||| |||||||||||||||||||| || | |||||||| || | | Sbjct: 210 tgtgccaatgcgaagctgggagcgggctccaagtccttcaccacattcttcaccgcgttg 269 Query: 191 atgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcctctcc 250 | ||| ||| || ||| || || |||||||| | | ||||||||||| || | || Sbjct: 270 aggtcgatgtcgatcaggttccccgtcgccgaagatatgacggtgcagctgctcttgccc 329 Query: 251 tcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacacatggc 310 || |||||||||||||||||||| |||||||| || ||||||| ||||||||||||| Sbjct: 330 tccacgtatggcaggaacagccttgccttctctgccgacgagaacaacgccacacatggc 389 Query: 311 ttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccggcagag 370 ||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||| Sbjct: 390 ttgtcgcgggcgttggcgagctgcacggcagcggtattggtcgcgacgacgccggcagag 449 Query: 371 tcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414 ||||||||||||||||||||||| || || || ||||||||||| Sbjct: 450 tcgttgatgaggcaggtgagctggcctggggtggtgatgaacag 493
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 305 catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 364 ||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 10626749 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 10626690 Query: 365 gcagagtcgttgatgaggcaggtgagct 392 | ||||||||||||||||||||||||| Sbjct: 10626689 acggagtcgttgatgaggcaggtgagct 10626662 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 10627031 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 10626972 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 10626971 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 10626912 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 303 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 10626911 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 10626854 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 509 ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 |||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 10626301 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 10626246 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 499 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| Sbjct: 10626482 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 10626431
>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_F05 Length = 134247 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 305 catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 364 ||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 54389 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 54330 Query: 365 gcagagtcgttgatgaggcaggtgagct 392 | ||||||||||||||||||||||||| Sbjct: 54329 acggagtcgttgatgaggcaggtgagct 54302 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 126 atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185 ||||||| |||||||| | ||| || |||| || || ||||| || |||||||| || | Sbjct: 54671 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 54612 Query: 186 cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245 |||||| ||| ||| || |||||| || ||| |||||||||| |||||||||| ||| Sbjct: 54611 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 54552 Query: 246 tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 303 ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 54551 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 54494 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 509 ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564 |||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| Sbjct: 53941 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 53886 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Minus Query: 448 ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 499 |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| Sbjct: 54122 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 54071
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 419 gccgtctcctcaccgacgatttcctcgatct 449 ||||||||||| |||||||| |||||||||| Sbjct: 4100230 gccgtctcctcgccgacgatgtcctcgatct 4100260
>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence Length = 146418 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 tgaggcaggtgagctgtccaggagt 402 ||||||| ||||||||||||||||| Sbjct: 92251 tgaggcatgtgagctgtccaggagt 92275
>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence Length = 215914 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 tgaggcaggtgagctgtccaggagt 402 ||||||| ||||||||||||||||| Sbjct: 27636 tgaggcatgtgagctgtccaggagt 27660
>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete sequence Length = 179035 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 374 ttgatgaggcaggtgagctgtccag 398 |||||||||||| |||||||||||| Sbjct: 111080 ttgatgaggcagctgagctgtccag 111056
>ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC615502 (LOC615502), mRNA Length = 936 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gaggcaggtgagctgtccag 398 |||||||||||||||||||| Sbjct: 78 gaggcaggtgagctgtccag 97
>ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG05805.4) partial mRNA Length = 738 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgagctggaccgcggcggtg 346 |||||||||||||||||||| Sbjct: 67 cgagctggaccgcggcggtg 48
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgttggcgagctggaccgcg 340 |||||||||||||||||||| Sbjct: 619213 cgttggcgagctggaccgcg 619232
>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence Length = 177378 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cgatttcctcgatctcttct 454 |||||||||||||||||||| Sbjct: 65597 cgatttcctcgatctcttct 65578
>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence Length = 145002 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tgattttgattatgtttgtg 134 |||||||||||||||||||| Sbjct: 133271 tgattttgattatgtttgtg 133252
>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8, complete sequence Length = 203472 Score = 40.1 bits (20), Expect = 7.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 46 ctcttggtca-catttgttggtcagatg 72 |||||||||| ||||||||||||||||| Sbjct: 43761 ctcttggtcagcatttgttggtcagatg 43734
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gtcgcgggcgttggcgagct 332 |||||||||||||||||||| Sbjct: 4842546 gtcgcgggcgttggcgagct 4842527
>emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chromosome 9 Contains the 5' end of the SMC2L1 gene for SMC2 structural maintenance of chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E) and a CpG island, complete sequence Length = 108821 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 ttgatgaggcaggtgagctg 393 |||||||||||||||||||| Sbjct: 64022 ttgatgaggcaggtgagctg 64041
>emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chromosome 6 Contains a novel gene, a mitochondrial ribosomal protein L35 (MRPL35) pseudogene and a CpG island, complete sequence Length = 108813 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 aacagaggcctcagcccatt 498 |||||||||||||||||||| Sbjct: 8393 aacagaggcctcagcccatt 8374
>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence Length = 242759 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcttgcttttcatgtctata 93 |||||||||||||||||||| Sbjct: 49874 gcttgcttttcatgtctata 49893
>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence Length = 220032 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gaggcaggtgagctgtccag 398 |||||||||||||||||||| Sbjct: 159761 gaggcaggtgagctgtccag 159742
>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 6/7 Length = 326301 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aatggagacgatgattttga 123 |||||||||||||||||||| Sbjct: 33203 aatggagacgatgattttga 33184
>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence Length = 223640 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcttgcttttcatgtctata 93 |||||||||||||||||||| Sbjct: 88033 gcttgcttttcatgtctata 88014
>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence Length = 166869 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cttctctgtgcctctcatgt 469 |||||||||||||||||||| Sbjct: 108642 cttctctgtgcctctcatgt 108623
>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171523 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agcttgcttttcatgtctat 92 |||||||||||||||||||| Sbjct: 136623 agcttgcttttcatgtctat 136642
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aatggagacgatgattttga 123 |||||||||||||||||||| Sbjct: 1623583 aatggagacgatgattttga 1623564
>gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, complete sequence Length = 43877 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 gctgtccaggagtagtgatgaaca 413 ||||| |||||||||||||||||| Sbjct: 2649 gctgtgcaggagtagtgatgaaca 2626
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tgccttcttcactgcctcgatgtc 195 |||||||||||| ||||||||||| Sbjct: 1211703 tgccttcttcacggcctcgatgtc 1211680
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gtcaatgccggccagcttgc 212 |||||||||||||||||||| Sbjct: 5024453 gtcaatgccggccagcttgc 5024434
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aatggagacgatgattttga 123 |||||||||||||||||||| Sbjct: 1171933 aatggagacgatgattttga 1171914
>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence Length = 200955 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gaggcaggtgagctgtccag 398 |||||||||||||||||||| Sbjct: 42289 gaggcaggtgagctgtccag 42270
>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE Length = 138861 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tgattttgattatgtttgtg 134 |||||||||||||||||||| Sbjct: 3710 tgattttgattatgtttgtg 3691
>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete sequence Length = 208805 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gggctccaagtccttgactg 173 |||||||||||||||||||| Sbjct: 69120 gggctccaagtccttgactg 69139 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,559,870 Number of Sequences: 3902068 Number of extensions: 4559870 Number of successful extensions: 99615 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 99223 Number of HSP's gapped (non-prelim): 392 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)