ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_481212.1| Oryza sativa (japonica cultivar-group), mRNA 248 2e-62
2ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group... 248 2e-62
3ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group... 248 2e-62
4dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
5dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
6dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
7gb|AY110166.1| Zea mays CL13480_1 mRNA sequence 222 1e-54
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
9dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
10gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 46 0.12
11gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome... 42 1.9
12gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete... 42 1.9
13emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chr... 42 1.9
14ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 7.7
15ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predict... 40 7.7
16gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.7
17gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 40 7.7
18gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete se... 40 7.7
19emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in... 40 7.7
20gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.7
21emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chro... 40 7.7
22emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chr... 40 7.7
23gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 7.7
24gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosom... 40 7.7
25emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A stra... 40 7.7
26gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 1... 40 7.7
27gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, com... 40 7.7
28gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswel... 40 7.7
29gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 7.7
30gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, comple... 40 7.7
31dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.7
32dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.7
33gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 7.7
34gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, comple... 40 7.7
35emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3... 40 7.7
36emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on ch... 40 7.7

>ref|XM_481212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1751

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1324

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005



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>dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H10, full
            insert sequence
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G12, full
            insert sequence
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||||
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttcc 1324

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            ||||| |||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcctgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1121 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1062

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1061 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1005



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>dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full
            insert sequence
          Length = 1751

 Score =  240 bits (121), Expect = 4e-60
 Identities = 247/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 186  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 246  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 305
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 306  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 365
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 366  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
            | |||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatggggcaggtgagttggccaggagtggtgatgaacag 1151



 Score =  105 bits (53), Expect = 2e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattgcctccgga 507
            |||||| |||||| ||| ||| || ||||||||||||||| |||| |||||| || | ||
Sbjct: 1117 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattgtcttcaga 1058

                                                                     
Query: 508  gctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
            ||||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 1057 gctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 1001



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>gb|AY110166.1| Zea mays CL13480_1 mRNA sequence
          Length = 1343

 Score =  222 bits (112), Expect = 1e-54
 Identities = 241/284 (84%)
 Strand = Plus / Plus

                                                                       
Query: 131 tgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactgcctcg 190
           ||||||||||||||||| |||||||||||||||||||| ||  | |||||||| || | |
Sbjct: 210 tgtgccaatgcgaagctgggagcgggctccaagtccttcaccacattcttcaccgcgttg 269

                                                                       
Query: 191 atgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcctctcc 250
           | ||| ||| ||  ||| || || |||||||| |  |  |||||||||||  || |  ||
Sbjct: 270 aggtcgatgtcgatcaggttccccgtcgccgaagatatgacggtgcagctgctcttgccc 329

                                                                       
Query: 251 tcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacacatggc 310
           || |||||||||||||||||||| ||||||||    || ||||||| |||||||||||||
Sbjct: 330 tccacgtatggcaggaacagccttgccttctctgccgacgagaacaacgccacacatggc 389

                                                                       
Query: 311 ttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccggcagag 370
           ||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 390 ttgtcgcgggcgttggcgagctgcacggcagcggtattggtcgcgacgacgccggcagag 449

                                                       
Query: 371 tcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 414
           ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 450 tcgttgatgaggcaggtgagctggcctggggtggtgatgaacag 493



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                            
Query: 305      catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 364
                ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 10626749 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 10626690

                                            
Query: 365      gcagagtcgttgatgaggcaggtgagct 392
                 | |||||||||||||||||||||||||
Sbjct: 10626689 acggagtcgttgatgaggcaggtgagct 10626662



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 126      atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
                ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 10627031 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 10626972

                                                                            
Query: 186      cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
                |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 10626971 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 10626912

                                                                          
Query: 246      tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 303
                ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 10626911 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 10626854



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 509      ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
                |||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 10626301 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 10626246



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 448      ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 499
                |||||| |||||| ||| ||| || ||||||||||||||| |||| ||||||
Sbjct: 10626482 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 10626431



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>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F05
          Length = 134247

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                         
Query: 305   catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 364
             ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 54389 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 54330

                                         
Query: 365   gcagagtcgttgatgaggcaggtgagct 392
              | |||||||||||||||||||||||||
Sbjct: 54329 acggagtcgttgatgaggcaggtgagct 54302



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 126   atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 185
             ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 54671 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 54612

                                                                         
Query: 186   cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 245
             |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 54611 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 54552

                                                                       
Query: 246   tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 303
             ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 54551 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 54494



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 509   ctgatctccttggcgatctctgcccacagttcgagggggaggaggcagtcgtcgtc 564
             |||||||||||||||||||| |||||  | ||||| |||||||||||||| |||||
Sbjct: 53941 ctgatctccttggcgatctcagcccaatgctcgagagggaggaggcagtcatcgtc 53886



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 448   ctcttctctgtgcctctcatgtggcatcacaaacagaggcctcagcccattg 499
             |||||| |||||| ||| ||| || ||||||||||||||| |||| ||||||
Sbjct: 54122 ctcttccctgtgcttctgatgagggatcacaaacagaggcttcagaccattg 54071



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 419     gccgtctcctcaccgacgatttcctcgatct 449
               ||||||||||| |||||||| ||||||||||
Sbjct: 4100230 gccgtctcctcgccgacgatgtcctcgatct 4100260



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>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence
          Length = 146418

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 378   tgaggcaggtgagctgtccaggagt 402
             ||||||| |||||||||||||||||
Sbjct: 92251 tgaggcatgtgagctgtccaggagt 92275



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>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence
          Length = 215914

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 378   tgaggcaggtgagctgtccaggagt 402
             ||||||| |||||||||||||||||
Sbjct: 27636 tgaggcatgtgagctgtccaggagt 27660



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>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete
              sequence
          Length = 179035

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 374    ttgatgaggcaggtgagctgtccag 398
              |||||||||||| ||||||||||||
Sbjct: 111080 ttgatgaggcagctgagctgtccag 111056



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>ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC615502 (LOC615502),
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 gaggcaggtgagctgtccag 398
           ||||||||||||||||||||
Sbjct: 78  gaggcaggtgagctgtccag 97



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>ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG05805.4) partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cgagctggaccgcggcggtg 346
           ||||||||||||||||||||
Sbjct: 67  cgagctggaccgcggcggtg 48



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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    cgttggcgagctggaccgcg 340
              ||||||||||||||||||||
Sbjct: 619213 cgttggcgagctggaccgcg 619232



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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   cgatttcctcgatctcttct 454
             ||||||||||||||||||||
Sbjct: 65597 cgatttcctcgatctcttct 65578



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>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
          Length = 145002

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    tgattttgattatgtttgtg 134
              ||||||||||||||||||||
Sbjct: 133271 tgattttgattatgtttgtg 133252



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>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8,
             complete sequence
          Length = 203472

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 46    ctcttggtca-catttgttggtcagatg 72
             |||||||||| |||||||||||||||||
Sbjct: 43761 ctcttggtcagcatttgttggtcagatg 43734



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     gtcgcgggcgttggcgagct 332
               ||||||||||||||||||||
Sbjct: 4842546 gtcgcgggcgttggcgagct 4842527



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>emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chromosome 9 Contains the 5'
             end of the SMC2L1 gene for SMC2 structural maintenance of
             chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E) and a
             CpG island, complete sequence
          Length = 108821

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   ttgatgaggcaggtgagctg 393
             ||||||||||||||||||||
Sbjct: 64022 ttgatgaggcaggtgagctg 64041



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>emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chromosome 6 Contains a
            novel gene, a mitochondrial ribosomal protein L35
            (MRPL35) pseudogene and a CpG island, complete sequence
          Length = 108813

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  aacagaggcctcagcccatt 498
            ||||||||||||||||||||
Sbjct: 8393 aacagaggcctcagcccatt 8374



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gcttgcttttcatgtctata 93
             ||||||||||||||||||||
Sbjct: 49874 gcttgcttttcatgtctata 49893



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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    gaggcaggtgagctgtccag 398
              ||||||||||||||||||||
Sbjct: 159761 gaggcaggtgagctgtccag 159742



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>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 6/7
          Length = 326301

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aatggagacgatgattttga 123
             ||||||||||||||||||||
Sbjct: 33203 aatggagacgatgattttga 33184



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>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence
          Length = 223640

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gcttgcttttcatgtctata 93
             ||||||||||||||||||||
Sbjct: 88033 gcttgcttttcatgtctata 88014



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>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence
          Length = 166869

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    cttctctgtgcctctcatgt 469
              ||||||||||||||||||||
Sbjct: 108642 cttctctgtgcctctcatgt 108623



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>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 171523

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     agcttgcttttcatgtctat 92
              ||||||||||||||||||||
Sbjct: 136623 agcttgcttttcatgtctat 136642



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     aatggagacgatgattttga 123
               ||||||||||||||||||||
Sbjct: 1623583 aatggagacgatgattttga 1623564



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>gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, complete sequence
          Length = 43877

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 390  gctgtccaggagtagtgatgaaca 413
            ||||| ||||||||||||||||||
Sbjct: 2649 gctgtgcaggagtagtgatgaaca 2626



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 172     tgccttcttcactgcctcgatgtc 195
               |||||||||||| |||||||||||
Sbjct: 1211703 tgccttcttcacggcctcgatgtc 1211680



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     gtcaatgccggccagcttgc 212
               ||||||||||||||||||||
Sbjct: 5024453 gtcaatgccggccagcttgc 5024434



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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     aatggagacgatgattttga 123
               ||||||||||||||||||||
Sbjct: 1171933 aatggagacgatgattttga 1171914



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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   gaggcaggtgagctgtccag 398
             ||||||||||||||||||||
Sbjct: 42289 gaggcaggtgagctgtccag 42270



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>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE
          Length = 138861

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  tgattttgattatgtttgtg 134
            ||||||||||||||||||||
Sbjct: 3710 tgattttgattatgtttgtg 3691



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>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete
             sequence
          Length = 208805

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gggctccaagtccttgactg 173
             ||||||||||||||||||||
Sbjct: 69120 gggctccaagtccttgactg 69139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,559,870
Number of Sequences: 3902068
Number of extensions: 4559870
Number of successful extensions: 99615
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99223
Number of HSP's gapped (non-prelim): 392
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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