ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23n05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, complete cds Length = 665 Score = 1193 bits (602), Expect = 0.0 Identities = 608/610 (99%) Strand = Plus / Minus Query: 114 gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 173 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 606 Query: 174 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 546 Query: 234 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 486 Query: 294 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 426 Query: 354 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 366 Query: 414 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 306 Query: 474 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 246 Query: 534 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 186 Query: 594 atagctccgctactgacggtcatactaaccatacggatgggctttggctggacatcacgc 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 atagctccgctactgacggtcatactaaccatacggatgggctttggctggacatcacgc 126 Query: 654 tcgctgccaccattcccaccccatggcccaatcttcacaggcttgctcattttggctcct 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tcgctgccaccattcccaccccatggcccaatcttcacaggcttgctcattttggctcct 66 Query: 714 gctttaccaa 723 |||||||||| Sbjct: 65 gctttaccaa 56
>gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds Length = 1338 Score = 743 bits (375), Expect = 0.0 Identities = 384/387 (99%) Strand = Plus / Minus Query: 114 gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 173 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 1279 Query: 174 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 233 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1278 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcttccagagga 1219 Query: 234 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 1159 Query: 294 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 1099 Query: 354 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 1039 Query: 414 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 979 Query: 474 acgtagttcgtagcgtctagattaatc 500 ||||||||||||||||||||||||||| Sbjct: 978 acgtagttcgtagcgtctagattaatc 952 Score = 400 bits (202), Expect = e-108 Identities = 202/202 (100%) Strand = Plus / Minus Query: 500 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 725 Query: 560 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 665 Query: 620 aaccatacggatgggctttggctggacatcacgctcgctgccaccattcccaccccatgg 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 aaccatacggatgggctttggctggacatcacgctcgctgccaccattcccaccccatgg 605 Query: 680 cccaatcttcacaggcttgctc 701 |||||||||||||||||||||| Sbjct: 604 cccaatcttcacaggcttgctc 583 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 701 cattttggctcctgctttaccaa 723 ||||||||||||||||||||||| Sbjct: 429 cattttggctcctgctttaccaa 407
>gb|DQ016627.1| Agrostis stolonifera Crs-1 mRNA, complete cds Length = 1283 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 663 ccattcccaccccatggcccaa 684 |||||||||||||||||||||| Sbjct: 599 ccattcccaccccatggcccaa 578
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 cagaggagaggtggccggccg 247 ||||||||||||||||||||| Sbjct: 14966991 cagaggagaggtggccggccg 14967011
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 cagaggagaggtggccggccg 247 ||||||||||||||||||||| Sbjct: 75771 cagaggagaggtggccggccg 75751
>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence Length = 227492 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cctccagaggagaggtggccg 243 ||||||||||||||||||||| Sbjct: 75453 cctccagaggagaggtggccg 75473
>gb|BC040994.1| Homo sapiens cDNA clone IMAGE:5272574 Length = 4564 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 ctccttcctccagaggagagg 237 ||||||||||||||||||||| Sbjct: 3953 ctccttcctccagaggagagg 3973
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ctccttcctccagaggagagg 237 ||||||||||||||||||||| Sbjct: 3236 ctccttcctccagaggagagg 3216
>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human BAC Library) complete sequence Length = 171236 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ctccttcctccagaggagagg 237 ||||||||||||||||||||| Sbjct: 147850 ctccttcctccagaggagagg 147830
>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence Length = 167236 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 acacataatcacacacatatg 142 ||||||||||||||||||||| Sbjct: 70663 acacataatcacacacatatg 70683
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 cagaggagaggtggccggccg 247 ||||||||||||||||||||| Sbjct: 14961525 cagaggagaggtggccggccg 14961545
>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete sequence Length = 194418 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 cacacataatcacacacatat 141 ||||||||||||||||||||| Sbjct: 182036 cacacataatcacacacatat 182016
>gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome 3, complete sequence Length = 230573 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ccagaggagaggtggccggcc 246 ||||||||||||||||||||| Sbjct: 137323 ccagaggagaggtggccggcc 137343
>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete sequence Length = 208131 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cacacataatcacacacatat 141 ||||||||||||||||||||| Sbjct: 102177 cacacataatcacacacatat 102197
>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence Length = 130493 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 tcacacataatcacacacata 140 ||||||||||||||||||||| Sbjct: 66801 tcacacataatcacacacata 66821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,135,092 Number of Sequences: 3902068 Number of extensions: 5135092 Number of successful extensions: 97961 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97890 Number of HSP's gapped (non-prelim): 71 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
