ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 5e-21
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 5e-21
3emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa... 109 5e-21
4dbj|AK121028.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
5gb|AY111514.1| Zea mays CL61420_1 mRNA sequence 44 0.27
6gb|AC090231.7| Homo sapiens chromosome 18, clone RP11-834I3, com... 42 1.1
7gb|AC012148.10| Homo sapiens chromosome 18, clone RP11-128L12, c... 42 1.1
8gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 4.2
9gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome... 40 4.2
10emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chro... 40 4.2
11gb|AY115108.1| Mus musculus glucocerebrosidase precursor (Gba) a... 40 4.2
12dbj|AK152745.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 4.2
13ref|NM_008094.3| Mus musculus glucosidase, beta, acid (Gba), mRNA 40 4.2
14dbj|AK166198.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 40 4.2
15dbj|AK082767.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 4.2
16dbj|AK201806.1| Mus musculus cDNA, clone:Y1G0139G21, strand:plus... 40 4.2
17gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, comple... 40 4.2
18gb|BC006663.1| Mus musculus glucosidase, beta, acid, mRNA (cDNA ... 40 4.2
19gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 m... 40 4.2
20gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complet... 40 4.2
21gb|M24119.1|MUSGCB Mouse glucocerebrosidase mRNA, complete cds 40 4.2
22gb|M89949.1|MUSGBA BALB/c glucocerebrosidase (Gba) gene, 5'end 40 4.2

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 5e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                            
Query: 123      catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182
                |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 18661714 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 18661655

                                       
Query: 183      agctccacgtgaggccggatcgc 205
                || ||||| |||||||| |||||
Sbjct: 18661654 agttccacatgaggccgtatcgc 18661632



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 51       ttttgaatccgaaaaaatagcacaagaca 79
                ||||||||| ||| |||||||||||||||
Sbjct: 18661785 ttttgaatctgaagaaatagcacaagaca 18661757



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 5e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                            
Query: 123      catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182
                |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 18587940 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 18587881

                                       
Query: 183      agctccacgtgaggccggatcgc 205
                || ||||| |||||||| |||||
Sbjct: 18587880 agttccacatgaggccgtatcgc 18587858



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 51       ttttgaatccgaaaaaatagcacaagaca 79
                ||||||||| ||| |||||||||||||||
Sbjct: 18588011 ttttgaatctgaagaaatagcacaagaca 18587983



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>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 180599

 Score =  109 bits (55), Expect = 5e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                         
Query: 123   catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182
             |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 95166 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 95107

                                    
Query: 183   agctccacgtgaggccggatcgc 205
             || ||||| |||||||| |||||
Sbjct: 95106 agttccacatgaggccgtatcgc 95084



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 51    ttttgaatccgaaaaaatagcacaagaca 79
             ||||||||| ||| |||||||||||||||
Sbjct: 95237 ttttgaatctgaagaaatagcacaagaca 95209



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>dbj|AK121028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050G17, full
            insert sequence
          Length = 2011

 Score =  101 bits (51), Expect = 1e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                        
Query: 123  catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182
            |||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| 
Sbjct: 1696 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagccctgagc 1637

                                   
Query: 183  agctccacgtgaggccggatcgc 205
            || ||||| |||||||| |||||
Sbjct: 1636 agttccacatgaggccgtatcgc 1614



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 51   ttttgaatccgaaaaaatagcacaagaca 79
            ||||||||| ||| |||||||||||||||
Sbjct: 1767 ttttgaatctgaagaaatagcacaagaca 1739



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>gb|AY111514.1| Zea mays CL61420_1 mRNA sequence
          Length = 777

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 147 gagtagatcctcttgcagtatgggctggtcctgagtag 184
           ||||| |||||||||||||| || |||||||| |||||
Sbjct: 229 gagtatatcctcttgcagtacggactggtcctaagtag 266



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>gb|AC090231.7| Homo sapiens chromosome 18, clone RP11-834I3, complete sequence
          Length = 171076

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     aagacaaactatctttattgt 94
              |||||||||||||||||||||
Sbjct: 103818 aagacaaactatctttattgt 103798



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>gb|AC012148.10| Homo sapiens chromosome 18, clone RP11-128L12, complete sequence
          Length = 167619

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    aagacaaactatctttattgt 94
             |||||||||||||||||||||
Sbjct: 64582 aagacaaactatctttattgt 64602



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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 63      aaaaatagcacaagacaaac 82
               ||||||||||||||||||||
Sbjct: 1795214 aaaaatagcacaagacaaac 1795233



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>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence
          Length = 218929

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    gctggtcctgagtagctcca 189
              ||||||||||||||||||||
Sbjct: 196837 gctggtcctgagtagctcca 196856



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>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3'
              end of a novel gene and apolipoprotein L 3 (APOL3)
              pseudogene, complete sequence
          Length = 172898

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     aaaaaatagcacaagacaaa 81
              ||||||||||||||||||||
Sbjct: 141969 aaaaaatagcacaagacaaa 141950



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>gb|AY115108.1| Mus musculus glucocerebrosidase precursor (Gba) and metaxin genes,
            complete cds; and thrombospondin 3 gene, partial cds
          Length = 16507

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  gctggtcctgagtagctcca 189
            ||||||||||||||||||||
Sbjct: 2237 gctggtcctgagtagctcca 2256



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>dbj|AK152745.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830083J15 product:glucosidase,
           beta; acid, full insert sequence
          Length = 1765

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 103 gctggtcctgagtagctcca 122



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>ref|NM_008094.3| Mus musculus glucosidase, beta, acid (Gba), mRNA
          Length = 1964

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 106 gctggtcctgagtagctcca 125



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>dbj|AK166198.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN
           full-length enriched library, clone:G830012P06
           product:glucosidase, beta; acid, full insert sequence
          Length = 1981

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 111 gctggtcctgagtagctcca 130



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>dbj|AK082767.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330011P10 product:acid beta glucosidase, full
           insert sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 119 gctggtcctgagtagctcca 138



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>dbj|AK201806.1| Mus musculus cDNA, clone:Y1G0139G21, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000053462, based on BLAT search
          Length = 209

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 114 gctggtcctgagtagctcca 133



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>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence
          Length = 215610

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    tggtgagatggtctcatcag 120
              ||||||||||||||||||||
Sbjct: 179545 tggtgagatggtctcatcag 179526



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>gb|BC006663.1| Mus musculus glucosidase, beta, acid, mRNA (cDNA clone MGC:6201
           IMAGE:3498551), complete cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 106 gctggtcctgagtagctcca 125



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>gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 map 3, complete sequence
          Length = 210499

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    gctggtcctgagtagctcca 189
              ||||||||||||||||||||
Sbjct: 205990 gctggtcctgagtagctcca 205971



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>gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complete sequence
          Length = 174267

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gctggtcctgagtagctcca 189
             ||||||||||||||||||||
Sbjct: 60444 gctggtcctgagtagctcca 60463



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>gb|M24119.1|MUSGCB Mouse glucocerebrosidase mRNA, complete cds
          Length = 1684

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 30  gctggtcctgagtagctcca 49



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>gb|M89949.1|MUSGBA BALB/c glucocerebrosidase (Gba) gene, 5'end
          Length = 1083

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gctggtcctgagtagctcca 189
           ||||||||||||||||||||
Sbjct: 542 gctggtcctgagtagctcca 561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,585,419
Number of Sequences: 3902068
Number of extensions: 2585419
Number of successful extensions: 37971
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37917
Number of HSP's gapped (non-prelim): 54
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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