Clone Name | rbasd23n04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 5e-21 Identities = 76/83 (91%) Strand = Plus / Minus Query: 123 catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 18661714 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 18661655 Query: 183 agctccacgtgaggccggatcgc 205 || ||||| |||||||| ||||| Sbjct: 18661654 agttccacatgaggccgtatcgc 18661632 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ttttgaatccgaaaaaatagcacaagaca 79 ||||||||| ||| ||||||||||||||| Sbjct: 18661785 ttttgaatctgaagaaatagcacaagaca 18661757
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 5e-21 Identities = 76/83 (91%) Strand = Plus / Minus Query: 123 catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 18587940 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 18587881 Query: 183 agctccacgtgaggccggatcgc 205 || ||||| |||||||| ||||| Sbjct: 18587880 agttccacatgaggccgtatcgc 18587858 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ttttgaatccgaaaaaatagcacaagaca 79 ||||||||| ||| ||||||||||||||| Sbjct: 18588011 ttttgaatctgaagaaatagcacaagaca 18587983
>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 180599 Score = 109 bits (55), Expect = 5e-21 Identities = 76/83 (91%) Strand = Plus / Minus Query: 123 catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 95166 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagtcctgagc 95107 Query: 183 agctccacgtgaggccggatcgc 205 || ||||| |||||||| ||||| Sbjct: 95106 agttccacatgaggccgtatcgc 95084 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ttttgaatccgaaaaaatagcacaagaca 79 ||||||||| ||| ||||||||||||||| Sbjct: 95237 ttttgaatctgaagaaatagcacaagaca 95209
>dbj|AK121028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050G17, full insert sequence Length = 2011 Score = 101 bits (51), Expect = 1e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 123 catcactttttcagcaaagctcgagagtagatcctcttgcagtatgggctggtcctgagt 182 |||||||| |||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct: 1696 catcacttcttcagcaaagctcgagagtagatcctcttgcagtatggactagccctgagc 1637 Query: 183 agctccacgtgaggccggatcgc 205 || ||||| |||||||| ||||| Sbjct: 1636 agttccacatgaggccgtatcgc 1614 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 ttttgaatccgaaaaaatagcacaagaca 79 ||||||||| ||| ||||||||||||||| Sbjct: 1767 ttttgaatctgaagaaatagcacaagaca 1739
>gb|AY111514.1| Zea mays CL61420_1 mRNA sequence Length = 777 Score = 44.1 bits (22), Expect = 0.27 Identities = 34/38 (89%) Strand = Plus / Plus Query: 147 gagtagatcctcttgcagtatgggctggtcctgagtag 184 ||||| |||||||||||||| || |||||||| ||||| Sbjct: 229 gagtatatcctcttgcagtacggactggtcctaagtag 266
>gb|AC090231.7| Homo sapiens chromosome 18, clone RP11-834I3, complete sequence Length = 171076 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 aagacaaactatctttattgt 94 ||||||||||||||||||||| Sbjct: 103818 aagacaaactatctttattgt 103798
>gb|AC012148.10| Homo sapiens chromosome 18, clone RP11-128L12, complete sequence Length = 167619 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aagacaaactatctttattgt 94 ||||||||||||||||||||| Sbjct: 64582 aagacaaactatctttattgt 64602
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaaatagcacaagacaaac 82 |||||||||||||||||||| Sbjct: 1795214 aaaaatagcacaagacaaac 1795233
>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence Length = 218929 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 196837 gctggtcctgagtagctcca 196856
>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3' end of a novel gene and apolipoprotein L 3 (APOL3) pseudogene, complete sequence Length = 172898 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaaaaatagcacaagacaaa 81 |||||||||||||||||||| Sbjct: 141969 aaaaaatagcacaagacaaa 141950
>gb|AY115108.1| Mus musculus glucocerebrosidase precursor (Gba) and metaxin genes, complete cds; and thrombospondin 3 gene, partial cds Length = 16507 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 2237 gctggtcctgagtagctcca 2256
>dbj|AK152745.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083J15 product:glucosidase, beta; acid, full insert sequence Length = 1765 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 103 gctggtcctgagtagctcca 122
>ref|NM_008094.3| Mus musculus glucosidase, beta, acid (Gba), mRNA Length = 1964 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 106 gctggtcctgagtagctcca 125
>dbj|AK166198.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830012P06 product:glucosidase, beta; acid, full insert sequence Length = 1981 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 111 gctggtcctgagtagctcca 130
>dbj|AK082767.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330011P10 product:acid beta glucosidase, full insert sequence Length = 1782 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 119 gctggtcctgagtagctcca 138
>dbj|AK201806.1| Mus musculus cDNA, clone:Y1G0139G21, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053462, based on BLAT search Length = 209 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 114 gctggtcctgagtagctcca 133
>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence Length = 215610 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tggtgagatggtctcatcag 120 |||||||||||||||||||| Sbjct: 179545 tggtgagatggtctcatcag 179526
>gb|BC006663.1| Mus musculus glucosidase, beta, acid, mRNA (cDNA clone MGC:6201 IMAGE:3498551), complete cds Length = 1964 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 106 gctggtcctgagtagctcca 125
>gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 map 3, complete sequence Length = 210499 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 205990 gctggtcctgagtagctcca 205971
>gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complete sequence Length = 174267 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 60444 gctggtcctgagtagctcca 60463
>gb|M24119.1|MUSGCB Mouse glucocerebrosidase mRNA, complete cds Length = 1684 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 30 gctggtcctgagtagctcca 49
>gb|M89949.1|MUSGBA BALB/c glucocerebrosidase (Gba) gene, 5'end Length = 1083 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gctggtcctgagtagctcca 189 |||||||||||||||||||| Sbjct: 542 gctggtcctgagtagctcca 561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,585,419 Number of Sequences: 3902068 Number of extensions: 2585419 Number of successful extensions: 37971 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37917 Number of HSP's gapped (non-prelim): 54 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)