Clone Name | rbasd23n03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F07, full insert sequence Length = 848 Score = 291 bits (147), Expect = 1e-75 Identities = 295/343 (86%), Gaps = 1/343 (0%) Strand = Plus / Minus Query: 191 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 250 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||||||||| Sbjct: 605 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 546 Query: 251 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 310 ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 545 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 486 Query: 311 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctgtgac 370 ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||| || Sbjct: 485 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctgtcac 426 Query: 371 gacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacg 430 ||| |||| ||||||||||||||||| ||||| || | ||||| |||||||||||||| Sbjct: 425 gacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtggaaaacg 366 Query: 431 caagtaaatggcaccatcgccacgggccagagcaccatatttttgcttggctatctattc 490 ||||||||||||||| || || ||||| || ||||| || ||||||||||||||| |||| Sbjct: 365 caagtaaatggcaccgtcacctcgggctagggcaccgta-ttttgcttggctatcaattc 307 Query: 491 tgactggaggagcttggacaccaagtttctccgctatcgagcc 533 | |||||||||||||||||||||||||||||||| || ||||| Sbjct: 306 taactggaggagcttggacaccaagtttctccgcaatggagcc 264
>gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphosphonucleoside 3'(2') phosphohydrolase mRNA, complete cds Length = 1480 Score = 291 bits (147), Expect = 1e-75 Identities = 295/343 (86%), Gaps = 1/343 (0%) Strand = Plus / Minus Query: 191 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 250 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||||||||| Sbjct: 1236 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 1177 Query: 251 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 310 ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 1176 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 1117 Query: 311 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctgtgac 370 ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||| || Sbjct: 1116 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctgtcac 1057 Query: 371 gacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacg 430 ||| |||| ||||||||||||||||| ||||| || | ||||| |||||||||||||| Sbjct: 1056 gacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtggaaaacg 997 Query: 431 caagtaaatggcaccatcgccacgggccagagcaccatatttttgcttggctatctattc 490 ||||||||||||||| || || ||||| || ||||| || ||||||||||||||| |||| Sbjct: 996 caagtaaatggcaccgtcacctcgggctagggcaccgta-ttttgcttggctatcaattc 938 Query: 491 tgactggaggagcttggacaccaagtttctccgctatcgagcc 533 | |||||||||||||||||||||||||||||||| || ||||| Sbjct: 937 taactggaggagcttggacaccaagtttctccgcaatggagcc 895
>gb|AY111987.1| Zea mays CL10219_1 mRNA sequence Length = 771 Score = 244 bits (123), Expect = 2e-61 Identities = 262/307 (85%), Gaps = 1/307 (0%) Strand = Plus / Plus Query: 228 gcctcctggacagacttcaggagtgatggcatcaactgcttatttgtggcaatgatgcct 287 ||||| ||||||| |||||||| || |||||||||| ||| || || || ||||||||| Sbjct: 389 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 448 Query: 288 gtgtcaacatcaagaaatcgccctttcgagaaatcaagatcgtttcctgaggcatctgtt 347 ||||| | ||| ||||||| |||||| |||||||| | |||||||| | ||||||||| Sbjct: 449 gtgtcgagatcgagaaatctccctttggagaaatccaagtcgtttcccgcagcatctgtt 508 Query: 348 actacacctccagattctgtgacgacaattgcaccagctgcatgatcccatatcttttcc 407 |||| ||||||| |||||| |||||||||| || |||||||| |||||||| || || Sbjct: 509 actatgcctccagcttctgtcacgacaattgatcctgctgcatggtcccatattttctct 568 Query: 408 ttataacccttgtgtggaaaacgcaagtaaatggcaccatcgccacgggccagagcacca 467 ||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||| Sbjct: 569 ctataacctttgtgtggaaagcgcaagtaaatggcgccatcacctcgggccagagcacca 628 Query: 468 tatttttgcttggctatctattctgactggaggagcttggacaccaagtttctccgctat 527 || |||||||||||| || ||||| ||||||||||||||||||||||||||||| || || Sbjct: 629 ta-ttttgcttggctgtcgattctaactggaggagcttggacaccaagtttctctgcaat 687 Query: 528 cgagcca 534 |||||| Sbjct: 688 agagcca 694
>gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase 1 mRNA, complete cds Length = 1453 Score = 226 bits (114), Expect = 6e-56 Identities = 250/294 (85%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 228 gcctcctggacagacttcaggagtgatggcatcaactgcttatttgtggcaatgatgcct 287 ||||| ||||||| |||||||| || |||||||||| ||| || || || ||||||||| Sbjct: 1137 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 1078 Query: 288 gtgtcaacatcaagaaatcgccctttcgagaaatcaagatcgtttcctgaggcatctgtt 347 ||||| | ||| ||||||| |||||| |||||||| | || ||||| | ||||||||| Sbjct: 1077 gtgtcgagatccagaaatctccctttggagaaatccaagtcctttcccgcagcatctgtt 1018 Query: 348 actacacctccagattctgtgacgacaattgcaccagctgcatgatcccatatcttttcc 407 |||| ||||||| |||||| |||||||||| || ||||||| |||||||| || || Sbjct: 1017 actatgcctccagcttctgtcacgacaattgatcctcctgcatggtcccatattttctct 958 Query: 408 ttataacccttgtgtggaaaacgcaagtaaatggcaccatcgccacgggccagagcacca 467 ||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||| Sbjct: 957 ctataacctttgtgtggaaagcgcaagtaaatggcgccatcacctcgggccagagcacca 898 Query: 468 tatttttgcttggctatctattctgactggaggagcttggacaccaagtttctc 521 || |||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 897 ta-ttttgcttggctgtcgattctaactggaggagcttggacaccaagtttctc 845
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 153 bits (77), Expect = 7e-34 Identities = 138/157 (87%), Gaps = 1/157 (0%) Strand = Plus / Plus Query: 364 ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 423 |||| ||||| |||| ||||||||||||||||| ||||| || | ||||| ||||||| Sbjct: 4216168 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 4216227 Query: 424 gaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgcttggcta 483 |||||||||||||||||||||| || || ||||| || ||||| || ||||||||||||| Sbjct: 4216228 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgta-ttttgcttggcta 4216286 Query: 484 tctattctgactggaggagcttggacaccaagtttct 520 || ||||| |||||||||||||||||||||||||||| Sbjct: 4216287 tcaattctaactggaggagcttggacaccaagtttct 4216323 Score = 135 bits (68), Expect = 2e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 191 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 250 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||||||||| Sbjct: 4215833 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215892 Query: 251 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 310 ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 4215893 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215952 Query: 311 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 ||| |||||||| | |||||||||||| |||||||| || | |||||||| ||||| Sbjct: 4215953 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 4216008 Score = 87.7 bits (44), Expect = 3e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 417 ttgtgtggaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgc 476 ||||||||||| ||| | |||||||| ||||| || |||| | ||||||||||||| || Sbjct: 4212529 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatatttt-gc 4212587 Query: 477 ttggctatctattctgactggaggagcttggacaccaagtttct 520 ||||||||| ||||| |||||||||||||| | ||||||||||| Sbjct: 4212588 ttggctatcaattctaactggaggagcttgaataccaagtttct 4212631 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 253 atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 312 |||||||||| | |||||||| ||||| ||||| | ||| ||||||| ||| |||| Sbjct: 4212259 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 4212318 Query: 313 tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 | |||||||| | |||||||||||| |||||| |||| | |||||||| ||||| Sbjct: 4212319 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 4212372
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 153 bits (77), Expect = 7e-34 Identities = 138/157 (87%), Gaps = 1/157 (0%) Strand = Plus / Plus Query: 364 ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 423 |||| ||||| |||| ||||||||||||||||| ||||| || | ||||| ||||||| Sbjct: 4216155 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 4216214 Query: 424 gaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgcttggcta 483 |||||||||||||||||||||| || || ||||| || ||||| || ||||||||||||| Sbjct: 4216215 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgta-ttttgcttggcta 4216273 Query: 484 tctattctgactggaggagcttggacaccaagtttct 520 || ||||| |||||||||||||||||||||||||||| Sbjct: 4216274 tcaattctaactggaggagcttggacaccaagtttct 4216310 Score = 135 bits (68), Expect = 2e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 191 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 250 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||||||||| Sbjct: 4215820 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215879 Query: 251 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 310 ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 4215880 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215939 Query: 311 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 ||| |||||||| | |||||||||||| |||||||| || | |||||||| ||||| Sbjct: 4215940 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 4215995 Score = 87.7 bits (44), Expect = 3e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 417 ttgtgtggaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgc 476 ||||||||||| ||| | |||||||| ||||| || |||| | ||||||||||||| || Sbjct: 4212516 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatatttt-gc 4212574 Query: 477 ttggctatctattctgactggaggagcttggacaccaagtttct 520 ||||||||| ||||| |||||||||||||| | ||||||||||| Sbjct: 4212575 ttggctatcaattctaactggaggagcttgaataccaagtttct 4212618 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 253 atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 312 |||||||||| | |||||||| ||||| ||||| | ||| ||||||| ||| |||| Sbjct: 4212246 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 4212305 Query: 313 tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 | |||||||| | |||||||||||| |||||| |||| | |||||||| ||||| Sbjct: 4212306 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 4212359
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 153 bits (77), Expect = 7e-34 Identities = 138/157 (87%), Gaps = 1/157 (0%) Strand = Plus / Minus Query: 364 ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 423 |||| ||||| |||| ||||||||||||||||| ||||| || | ||||| ||||||| Sbjct: 67615 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 67556 Query: 424 gaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgcttggcta 483 |||||||||||||||||||||| || || ||||| || ||||| || ||||||||||||| Sbjct: 67555 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgta-ttttgcttggcta 67497 Query: 484 tctattctgactggaggagcttggacaccaagtttct 520 || ||||| |||||||||||||||||||||||||||| Sbjct: 67496 tcaattctaactggaggagcttggacaccaagtttct 67460 Score = 135 bits (68), Expect = 2e-28 Identities = 149/176 (84%) Strand = Plus / Minus Query: 191 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 250 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||||||||| Sbjct: 67950 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 67891 Query: 251 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 310 ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 67890 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 67831 Query: 311 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 ||| |||||||| | |||||||||||| |||||||| || | |||||||| ||||| Sbjct: 67830 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 67775 Score = 87.7 bits (44), Expect = 3e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 417 ttgtgtggaaaacgcaagtaaatggcaccatcgccacgggccagagcaccatatttttgc 476 ||||||||||| ||| | |||||||| ||||| || |||| | ||||||||||||| || Sbjct: 71254 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatatttt-gc 71196 Query: 477 ttggctatctattctgactggaggagcttggacaccaagtttct 520 ||||||||| ||||| |||||||||||||| | ||||||||||| Sbjct: 71195 ttggctatcaattctaactggaggagcttgaataccaagtttct 71152 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 253 atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 312 |||||||||| | |||||||| ||||| ||||| | ||| ||||||| ||| |||| Sbjct: 71524 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 71465 Query: 313 tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 366 | |||||||| | |||||||||||| |||||| |||| | |||||||| ||||| Sbjct: 71464 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 71411
>gb|AY110005.1| Zea mays CL14808_1 mRNA sequence Length = 1272 Score = 85.7 bits (43), Expect = 1e-13 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 439 tggcaccatcgccacgggccagagcaccatatttttgcttggctatctattctgactgga 498 |||||||||| ||||| || || |||||||||||| ||||||||||| ||||| || ||| Sbjct: 435 tggcaccatcaccacgtgctagggcaccatatttt-gcttggctatccattctaacagga 493 Query: 499 ggagcttggacaccaagtttctc 521 |||||| |||||||||||||||| Sbjct: 494 ggagctcggacaccaagtttctc 516 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 326 atcgtttcctgaggcatctgttactacacctccagattctgtgacgacaattgcaccagc 385 ||||||||||| ||||||| |||| | || |||| ||||||||| | ||||| ||||| Sbjct: 322 atcgtttcctgcggcatcttttaccatgccaccagcttctgtgacaataattgatccagc 381 Query: 386 tgcatgatccca 397 |||||||||||| Sbjct: 382 tgcatgatccca 393
>dbj|AB019227.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBM17 Length = 52717 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagtttct 520 |||||||||||||| || | |||||| ||||||| |||||| ||||||| Sbjct: 37548 tttgcttggctatcaatacggactggtggagctttgacaccgagtttct 37500
>ref|NM_125794.3| Arabidopsis thaliana SAL1; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase AT5G63980 (SAL1) mRNA, complete cds Length = 1330 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 924 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 878
>emb|AJ310755.1|GHI310755 Gossypium hirsutum partial mRNA for 3'(2'),5'-bisphosphate nucleotidase (f1 gene) Length = 990 Score = 46.1 bits (23), Expect = 0.12 Identities = 90/111 (81%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 381 ccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacgcaagtaaatg 440 ||||| |||||||||||||| ||||| ||| || |||||||||| ||||| || ||| Sbjct: 475 ccagcagcatgatcccatattttttctcgataccctttgtgtggaagacgcagatatatg 416 Query: 441 gcaccatcgccacgggccagagcaccatatttttgcttggctatctattct 491 || ||||| || | || ||||||||||| ||||| |||||||| ||||| Sbjct: 415 gctccatctcctctggatagagcaccata-ctttgcctggctatcaattct 366 Score = 44.1 bits (22), Expect = 0.46 Identities = 43/50 (86%) Strand = Plus / Minus Query: 253 atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaaga 302 |||||||||||| || || ||| |||||||||||||||| | ||||||| Sbjct: 600 atggcatcaacttctggttggtgacaatgatgcctgtgtccagatcaaga 551
>gb|AY034894.1| Arabidopsis thaliana inositol polyphosphate 1-phosphatase FIERY1 (FRY1) mRNA, complete cds Length = 1062 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 785 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 739
>emb|BX830296.1|CNS0A02J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1288 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 920 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 874
>emb|BX831292.1|CNS09ZDI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS76ZB01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1297 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 925 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 879
>emb|BX830691.1|CNS09ZGD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS14ZF01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1303 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 922 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 876
>emb|BX831522.1|CNS09ZLC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZC12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1270 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 913 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 867
>gb|BT005993.1| Arabidopsis thaliana At5g63980 gene, complete cds Length = 1062 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 785 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 739
>gb|U40433.1|ATU40433 Arabidopsis thaliana 3'(2'),5'-bisphosphate nucleotidase (SAL1) mRNA, complete cds Length = 1328 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 472 tttgcttggctatctattctgactggaggagcttggacaccaagttt 518 |||||||||||||| || | |||||| ||||||| |||||| ||||| Sbjct: 892 tttgcttggctatcaatacggactggtggagctttgacaccgagttt 846
>emb|BX276177.6| Zebrafish DNA sequence from clone CH211-223M11 in linkage group 20, complete sequence Length = 202340 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 taaacagtgtgaataaggtgtg 127 |||||||||||||||||||||| Sbjct: 152618 taaacagtgtgaataaggtgtg 152639
>ref|XM_468288.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 381 ccagctgcatgatcccatatcttttcctt 409 ||||| ||||||||||||||||| ||||| Sbjct: 1254 ccagcggcatgatcccatatcttctcctt 1226
>emb|AL138715.11| Human DNA sequence from clone RP11-77P19 on chromosome 13 Contains a novel zinc finger protein pseudogene, a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 161183 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tcttttatttagtttctttca 22 ||||||||||||||||||||| Sbjct: 138003 tcttttatttagtttctttca 138023
>emb|AL163202.2|HS21C002 Homo sapiens chromosome 21 segment HS21C002 Length = 340000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tcttttatttagtttctttca 22 ||||||||||||||||||||| Sbjct: 246344 tcttttatttagtttctttca 246364
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ctggacagacttcaggagtga 253 ||||||||||||||||||||| Sbjct: 376744 ctggacagacttcaggagtga 376724
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 381 ccagctgcatgatcccatatcttttcctt 409 ||||| ||||||||||||||||| ||||| Sbjct: 123350 ccagcggcatgatcccatatcttctcctt 123322
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 381 ccagctgcatgatcccatatcttttcctt 409 ||||| ||||||||||||||||| ||||| Sbjct: 34381756 ccagcggcatgatcccatatcttctcctt 34381784
>gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, complete sequence Length = 18461 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tacacataaacagtgtgaata 120 ||||||||||||||||||||| Sbjct: 15207 tacacataaacagtgtgaata 15227
>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1548_F12 Length = 118814 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 381 ccagctgcatgatcccatatcttttcctt 409 ||||| ||||||||||||||||| ||||| Sbjct: 79403 ccagcggcatgatcccatatcttctcctt 79431
>dbj|AK065057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J07, full insert sequence Length = 1893 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 381 ccagctgcatgatcccatatcttttcctt 409 ||||| ||||||||||||||||| ||||| Sbjct: 1254 ccagcggcatgatcccatatcttctcctt 1226
>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173106 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgatcccatatcttttcctta 410 ||||||||||||||||||||| Sbjct: 111865 tgatcccatatcttttcctta 111885
>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete sequences Length = 168406 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 cttggctatctattctgactg 496 ||||||||||||||||||||| Sbjct: 163222 cttggctatctattctgactg 163202
>dbj|AP001170.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMF21-92B11, complete sequence Length = 36463 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tcttttatttagtttctttca 22 ||||||||||||||||||||| Sbjct: 27977 tcttttatttagtttctttca 27997
>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete sequences Length = 179680 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 cttggctatctattctgactg 496 ||||||||||||||||||||| Sbjct: 8411 cttggctatctattctgactg 8391
>ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P), transcript variant 1 (LOC476921), mRNA Length = 3110 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tgtgtcaacatcaagaaatc 306 |||||||||||||||||||| Sbjct: 2579 tgtgtcaacatcaagaaatc 2560
>ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P), transcript variant 2 (LOC476921), mRNA Length = 3116 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tgtgtcaacatcaagaaatc 306 |||||||||||||||||||| Sbjct: 2585 tgtgtcaacatcaagaaatc 2566
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttttatttagtttctttcat 23 |||||||||||||||||||| Sbjct: 92744 ttttatttagtttctttcat 92725
>emb|AL357059.13| Human DNA sequence from clone RP11-153G5 on chromosome 10 Contains part of a novel gene (KIAA0534), complete sequence Length = 74127 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcccatatcttttccttata 412 |||||||||||||||||||| Sbjct: 14038 tcccatatcttttccttata 14057
>emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chromosome 1 Contains a novel gene, complete sequence Length = 182025 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 aacagtgtgaataaggtgtg 127 |||||||||||||||||||| Sbjct: 24291 aacagtgtgaataaggtgtg 24272
>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16, complete sequence Length = 238554 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tgcatgatcccatatctttt 405 |||||||||||||||||||| Sbjct: 87439 tgcatgatcccatatctttt 87458
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence Length = 152722 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 tggcaatgatgcctgtgtca 293 |||||||||||||||||||| Sbjct: 5073 tggcaatgatgcctgtgtca 5092
>gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177245 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ttcaagccaaaataacttct 192 |||||||||||||||||||| Sbjct: 123424 ttcaagccaaaataacttct 123405
>gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complete sequence Length = 173967 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aaacggggaaggttcaagcc 180 |||||||||||||||||||| Sbjct: 35347 aaacggggaaggttcaagcc 35328
>gb|AC158371.2| Pan troglodytes BAC clone CH251-423C22 from chromosome unknown, complete sequence Length = 154709 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attgcatttgtccaaacaaa 90 |||||||||||||||||||| Sbjct: 145615 attgcatttgtccaaacaaa 145634
>gb|AC154469.3| Mus musculus BAC clone RP24-158M15 from chromosome 17, complete sequence Length = 151047 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcttttatttagtttctttc 21 |||||||||||||||||||| Sbjct: 69885 tcttttatttagtttctttc 69866
>gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence Length = 89453 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcttttatttagtttcttt 20 |||||||||||||||||||| Sbjct: 36676 ctcttttatttagtttcttt 36657
>dbj|BS000222.1| Pan troglodytes chromosome 22 clone:RP43-111J12, map 22, complete sequences Length = 189474 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cttttatttagtttctttca 22 |||||||||||||||||||| Sbjct: 84832 cttttatttagtttctttca 84813
>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence Length = 211981 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 tggcaatgatgcctgtgtca 293 |||||||||||||||||||| Sbjct: 202694 tggcaatgatgcctgtgtca 202713
>emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-369B6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167398 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attgcatttgtccaaacaaa 90 |||||||||||||||||||| Sbjct: 102149 attgcatttgtccaaacaaa 102130
>emb|AJ239322.3|HS156L9 Homo sapiens sequence from PAC RPCI-1 156L9, complete sequence Length = 111293 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cttttatttagtttctttca 22 |||||||||||||||||||| Sbjct: 65987 cttttatttagtttctttca 66006
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cttttatttagtttctttca 22 |||||||||||||||||||| Sbjct: 276690 cttttatttagtttctttca 276671
>emb|CT010429.11| Mouse DNA sequence from clone RP23-306H20 on chromosome 17, complete sequence Length = 191390 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tcttttatttagtttctttc 21 |||||||||||||||||||| Sbjct: 136904 tcttttatttagtttctttc 136923
>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 169902 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attgcatttgtccaaacaaa 90 |||||||||||||||||||| Sbjct: 77297 attgcatttgtccaaacaaa 77316
>emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-533L7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162986 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attgcatttgtccaaacaaa 90 |||||||||||||||||||| Sbjct: 145954 attgcatttgtccaaacaaa 145935
>emb|AJ006996.1|HSG1150 Homo sapiens chromosome 21 PAC LLNLP704G1150Q13, complete sequence Length = 178660 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cttttatttagtttctttca 22 |||||||||||||||||||| Sbjct: 91628 cttttatttagtttctttca 91609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,337,928 Number of Sequences: 3902068 Number of extensions: 5337928 Number of successful extensions: 95643 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95379 Number of HSP's gapped (non-prelim): 252 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)