ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23m24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MGR4_HUMAN (Q14833) Metabotropic glutamate receptor 4 precursor ... 33 1.2
2PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate pho... 32 2.0
3PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 32 2.0
4MGR6_RAT (P35349) Metabotropic glutamate receptor 6 precursor (m... 31 3.5
5MGR6_RABIT (Q863I4) Metabotropic glutamate receptor 6 precursor ... 31 3.5
6MGR6_HUMAN (O15303) Metabotropic glutamate receptor 6 precursor ... 31 3.5
7RL20_PSEFL (Q9X6E8) 50S ribosomal protein L20 31 4.5
8MGR6_MOUSE (Q5NCH9) Metabotropic glutamate receptor 6 precursor ... 31 4.5
9NU5C_MARPO (P06264) NAD(P)H-quinone oxidoreductase chain 5, chlo... 30 5.9
10RL20_PSEPK (Q88K24) 50S ribosomal protein L20 30 7.7
11RL20_NEIMA (Q9JVA1) 50S ribosomal protein L20 30 7.7

>MGR4_HUMAN (Q14833) Metabotropic glutamate receptor 4 precursor (mGluR4)|
          Length = 912

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 481 CSMHCNTCDGYSYSTNVYTFKLLVVGSRILPSCQSRRGCR 362
           C  HC  C GY Y  + YT K      R     ++R GCR
Sbjct: 538 CCWHCEPCTGYQYQVDRYTCKTCPYDMR---PTENRTGCR 574



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>PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1302

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -3

Query: 309 HLCAAM-VPVFLTLMLSKRTIEPDRVSL---LQMWKISWREGGSKDSNTVDVK 163
           HLC ++ V   +TL  SK++  P+R +    L+  +I+W  G  K   ++D++
Sbjct: 24  HLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSRGADKIEGSIDIR 76



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -3

Query: 309 HLCAAM-VPVFLTLMLSKRTIEPDRVSL---LQMWKISWREGGSKDSNTVDVK 163
           HLC ++ V   +TL  SK++  P+R +    L+  +I+W  G  K   ++D++
Sbjct: 24  HLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSRGADKIEGSIDIR 76



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>MGR6_RAT (P35349) Metabotropic glutamate receptor 6 precursor (mGluR6)|
          Length = 871

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 CSMHCNTCDGYSYSTNVYTFKLLVVGSRILPSCQSRRGCRQT 356
           C  HC  CDGY +  + +T +      R  P   +  GCR T
Sbjct: 530 CCWHCEACDGYRFQVDEFTCEACPGDMRPTP---NHTGCRPT 568



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>MGR6_RABIT (Q863I4) Metabotropic glutamate receptor 6 precursor (mGluR6)|
          Length = 868

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 CSMHCNTCDGYSYSTNVYTFKLLVVGSRILPSCQSRRGCRQT 356
           C  HC  CDGY +  + +T +      R  P   +  GCR T
Sbjct: 527 CCWHCEACDGYRFQVDEFTCEACPRDMRPTP---NHTGCRPT 565



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>MGR6_HUMAN (O15303) Metabotropic glutamate receptor 6 precursor (mGluR6)|
          Length = 877

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 CSMHCNTCDGYSYSTNVYTFKLLVVGSRILPSCQSRRGCRQT 356
           C  HC  CDGY +  + +T +      R  P   +  GCR T
Sbjct: 536 CCWHCEACDGYRFQVDEFTCEACPGDMRPTP---NHTGCRPT 574



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>RL20_PSEFL (Q9X6E8) 50S ribosomal protein L20|
          Length = 118

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 494 AYGRRSSKKLQYRMLSAPAITRGARDFVPALSSTLSMMKMATIDVKAIVIGNLS 655
           AY  R  KK Q+R L    I  GAR+   + S  ++ +K A+I++   V+ +L+
Sbjct: 46  AYRDRRQKKRQFRALWIARINAGARNNGLSYSRLIAGLKKASIEIDRKVLADLA 99



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>MGR6_MOUSE (Q5NCH9) Metabotropic glutamate receptor 6 precursor (mGluR6)|
          Length = 871

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 CSMHCNTCDGYSYSTNVYTFKLLVVGSRILPSCQSRRGCRQT 356
           C  HC  CDGY +  + +T +      R  P   +  GCR T
Sbjct: 530 CCWHCEACDGYRFQVDEFTCEACPGHMRPTP---NHTGCRPT 568



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>NU5C_MARPO (P06264) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 692

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 67  YSDGYYFYTSGYIMKNTYLLLFRRS*NCSIIIFDIYRVAIF 189
           YSD Y FY  GYI    YL LF  S    ++  ++ +V IF
Sbjct: 110 YSDSYMFYDEGYIKFFCYLSLFTASMLGLVLSPNLIQVYIF 150



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>RL20_PSEPK (Q88K24) 50S ribosomal protein L20|
          Length = 118

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 494 AYGRRSSKKLQYRMLSAPAITRGARDFVPALSSTLSMMKMATIDVKAIVIGNLS 655
           AY  R  KK Q+R L    I  GAR    + S  ++ +K A+I++   V+ +L+
Sbjct: 46  AYRDRRQKKRQFRALWIARINAGARTNGLSYSRLIAGLKKASIEIDRKVLADLA 99



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>RL20_NEIMA (Q9JVA1) 50S ribosomal protein L20|
          Length = 119

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 494 AYGRRSSKKLQYRMLSAPAITRGARDFVPALSSTLSMMKMATIDVKAIVIGNLS 655
           AY  R  +K Q+R L    I  GAR+   + S  ++ +K A+I++   V+ +L+
Sbjct: 46  AYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLA 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,292,071
Number of Sequences: 219361
Number of extensions: 2188728
Number of successful extensions: 5330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5330
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7592921998
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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