Clone Name	rbasd23m19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	emb|AL050307.13|HSDJ689N3 Human DNA sequence from clone RP4-689N...	44	0.092
2	emb|AJ007507.1|CHI7507 Cichorium intybus X Cichorium endivia sub...	42	0.37
3	dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023	42	0.37
4	emb|AL928870.5| Zebrafish DNA sequence from clone CH211-237D5 in...	42	0.37
5	gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complet...	40	1.4
6	gb|AC093013.14| Homo sapiens 12 BAC RP11-158O15 (Roswell Park Ca...	40	1.4
7	gb|AC079824.25| Homo sapiens Xp BAC RP11-750F16 (Roswell Park Ca...	40	1.4
8	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	40	1.4
9	gb|AC104689.4| Homo sapiens BAC clone RP11-158O16 from 4, comple...	40	1.4
10	dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D...	40	1.4
11	gb|DQ214007.1| Taeniopygia guttata clone 0064P0018A03 LIM domain...	38	5.7
12	gb|BC106431.1| Xenopus laevis cDNA clone MGC:131122 IMAGE:798356...	38	5.7
13	gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, comp...	38	5.7
14	ref|XM_420990.1| PREDICTED: Gallus gallus similar to LIM domain ...	38	5.7
15	gb|BC073102.1| Xenopus laevis cDNA clone IMAGE:5079526, partial cds	38	5.7
16	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	38	5.7
17	emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on ch...	38	5.7
18	emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro...	38	5.7
19	emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 i...	38	5.7
20	emb|BX928755.10| Zebrafish DNA sequence from clone DKEY-199C16 i...	38	5.7
21	gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome...	38	5.7
22	gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Ca...	38	5.7
23	gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Can...	38	5.7
24	emb|CR523064.1| Gallus gallus finished cDNA, clone ChEST566o24	38	5.7
25	gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold	38	5.7
26	gb|AC127467.3| Atelerix albiventris clone LB4-4E15, complete seq...	38	5.7
27	emb|CR390979.1| Gallus gallus finished cDNA, clone ChEST538i20	38	5.7
28	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	38	5.7
29	gb|AC016734.7| Homo sapiens BAC clone RP11-391A7 from 2, complet...	38	5.7
30	gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Ca...	38	5.7
31	gb|AC119793.3| Homo sapiens 12 BAC RP11-390F17 (Roswell Park Can...	38	5.7
32	gb|DQ314493.1| Haloquadratum walsbyi clone 2B08 sequence	38	5.7
33	gb|AC151393.3| Atelerix albiventris clone LB4-130D24, complete s...	38	5.7
34	gb|AC156270.5| Mus musculus 10 BAC RP24-289H6 (Roswell Park Canc...	38	5.7
35	emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2...	38	5.7
36	emb|AL590387.7| Human DNA sequence from clone RP3-356B20 on chro...	38	5.7
37	gb|AC161466.4| Gallus gallus BAC clone CH261-104N11 from chromos...	38	5.7
38	emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on ch...	38	5.7
39	emb|AL805906.7| Mouse DNA sequence from clone RP23-113J20 on chr...	38	5.7

---

>emb|AL050307.13|HSDJ689N3 Human DNA sequence from clone RP4-689N3 on chromosome Xp11.1-11.4
             Contains the 5' end of the RP2 gene for retinitis
             pigmentosa 2 (X-linked recessive), the 5' end of the
             SLC9A7 gene for solute carrier family 9 (sodium/hydrogen
             exchanger), isoform 7 (NHE7), and two CpG Islands,
             complete sequence
          Length = 121502

 Score = 44.1 bits (22), Expect = 0.092
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    gtataaaattcaacaagctatcaaaa 104
             |||||||||| |||||||||||||||
Sbjct: 32595 gtataaaatttaacaagctatcaaaa 32620

---

>emb|AJ007507.1|CHI7507 Cichorium intybus X Cichorium endivia subsp. endivia mRNA for
           nonsymbiotic hemoglobin
          Length = 602

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  catttgtgtctttcagaaatg 45
           |||||||||||||||||||||
Sbjct: 154 catttgtgtctttcagaaatg 134

---

>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     atcaaaagacacaatcaagtc 118
              |||||||||||||||||||||
Sbjct: 920053 atcaaaagacacaatcaagtc 920033

---

>emb|AL928870.5| Zebrafish DNA sequence from clone CH211-237D5 in linkage group 20,
             complete sequence
          Length = 179253

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    acacgtataaaattcaacaag 95
             |||||||||||||||||||||
Sbjct: 29703 acacgtataaaattcaacaag 29723

---

>gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complete sequence
          Length = 79475

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tatcaaaagacacaatcaag 116
             ||||||||||||||||||||
Sbjct: 22722 tatcaaaagacacaatcaag 22703

---

>gb|AC093013.14| Homo sapiens 12 BAC RP11-158O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161114

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tatcaaaagacacaatcaag 116
              ||||||||||||||||||||
Sbjct: 122814 tatcaaaagacacaatcaag 122833

---

>gb|AC079824.25| Homo sapiens Xp BAC RP11-750F16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 119386

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tgtctttcagaaatgcaaaa 50
             ||||||||||||||||||||
Sbjct: 81434 tgtctttcagaaatgcaaaa 81453

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      gtctttcagaaatgcaaaac 51
               ||||||||||||||||||||
Sbjct: 6264564 gtctttcagaaatgcaaaac 6264583

---

>gb|AC104689.4| Homo sapiens BAC clone RP11-158O16 from 4, complete sequence
          Length = 161428

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tatcaaaagacacaatcaag 116
             ||||||||||||||||||||
Sbjct: 38302 tatcaaaagacacaatcaag 38283

---

>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gtctttcagaaatgcaaaac 51
             ||||||||||||||||||||
Sbjct: 50701 gtctttcagaaatgcaaaac 50720

---

>gb|DQ214007.1| Taeniopygia guttata clone 0064P0018A03 LIM domain only 1 variant
            2-like mRNA, complete sequence
          Length = 1357

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   accagtaataaaattgcat 72
            |||||||||||||||||||
Sbjct: 1318 accagtaataaaattgcat 1300

---

>gb|BC106431.1| Xenopus laevis cDNA clone MGC:131122 IMAGE:7983564, complete cds
          Length = 1395

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   accagtaataaaattgcat 72
            |||||||||||||||||||
Sbjct: 1338 accagtaataaaattgcat 1320

---

>gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, complete sequence
          Length = 148235

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    tcacattagatgcatttgt 31
             |||||||||||||||||||
Sbjct: 86154 tcacattagatgcatttgt 86172

---

>ref|XM_420990.1| PREDICTED: Gallus gallus similar to LIM domain only 1 (rhombotin 1)
            (LOC423058), mRNA
          Length = 2383

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   accagtaataaaattgcat 72
            |||||||||||||||||||
Sbjct: 2355 accagtaataaaattgcat 2337

---

>gb|BC073102.1| Xenopus laevis cDNA clone IMAGE:5079526, partial cds
          Length = 1442

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   accagtaataaaattgcat 72
            |||||||||||||||||||
Sbjct: 1401 accagtaataaaattgcat 1383

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 10      tgctcacattagatgcatt 28
               |||||||||||||||||||
Sbjct: 1182705 tgctcacattagatgcatt 1182687

---

>emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on chromosome 13 Contains the
              SOX21 gene for SRY (sex determining region Y)-box 21, a
              bromodomain containing 7 (BP75, NAG4, CELTIX1) (BRD7)
              pseudogene, a ribosomal protein L21 (RPL21) pseudogene and
              2 CpG islands, complete sequence
          Length = 180538

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     atcaaaagacacaatcaag 116
              |||||||||||||||||||
Sbjct: 156250 atcaaaagacacaatcaag 156268

---

>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     taataaaattgcatctaca 77
              |||||||||||||||||||
Sbjct: 509235 taataaaattgcatctaca 509253

---

>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20
              Contains the gene for a novel protein similar to vertebrate
              fibronectin type III domain containing 1 (FNDC1), the 5'
              end of the gene for a novel protein similar to vertebrate
              otoferlin (OTOF), a novel gene and two CpG islands,
              complete sequence
          Length = 163523

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     tctttcagaaatgcaaaac 51
              |||||||||||||||||||
Sbjct: 106924 tctttcagaaatgcaaaac 106906

---

>emb|BX928755.10| Zebrafish DNA sequence from clone DKEY-199C16 in linkage group 21,
             complete sequence
          Length = 174423

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    taataaaattgcatctaca 77
             |||||||||||||||||||
Sbjct: 14567 taataaaattgcatctaca 14549

---

>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    tgctcacattagatgcatt 28
             |||||||||||||||||||
Sbjct: 86409 tgctcacattagatgcatt 86391

---

>gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 129740

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 23    tgcatttgtgtctttcagaaatg 45
             ||||||||||| |||||||||||
Sbjct: 49810 tgcatttgtgtgtttcagaaatg 49832

---

>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181207

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     ttcaacaagctatcaaaag 105
              |||||||||||||||||||
Sbjct: 100756 ttcaacaagctatcaaaag 100738

---

>emb|CR523064.1| Gallus gallus finished cDNA, clone ChEST566o24
          Length = 988

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  accagtaataaaattgcat 72
           |||||||||||||||||||
Sbjct: 956 accagtaataaaattgcat 938

---

>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 31      tgtctttcagaaatgcaaa 49
               |||||||||||||||||||
Sbjct: 1556149 tgtctttcagaaatgcaaa 1556167

---

>gb|AC127467.3| Atelerix albiventris clone LB4-4E15, complete sequence
          Length = 139228

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     tgtctttcagaaatgcaaa 49
              |||||||||||||||||||
Sbjct: 136862 tgtctttcagaaatgcaaa 136880

---

>emb|CR390979.1| Gallus gallus finished cDNA, clone ChEST538i20
          Length = 945

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  accagtaataaaattgcat 72
           |||||||||||||||||||
Sbjct: 921 accagtaataaaattgcat 903

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 10      tgctcacattagatgcatt 28
               |||||||||||||||||||
Sbjct: 1182703 tgctcacattagatgcatt 1182685

---

>gb|AC016734.7| Homo sapiens BAC clone RP11-391A7 from 2, complete sequence
          Length = 218836

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 97  tatcaaaagacacaatcaa 115
           |||||||||||||||||||
Sbjct: 971 tatcaaaagacacaatcaa 989

---

>gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 143417

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 23    tgcatttgtgtctttcagaaatg 45
             ||||||||||| |||||||||||
Sbjct: 63480 tgcatttgtgtgtttcagaaatg 63502

---

>gb|AC119793.3| Homo sapiens 12 BAC RP11-390F17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 73625

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     aaatgctcacattagatgcattt 29
             ||||||||||||||||| |||||
Sbjct: 47832 aaatgctcacattagatacattt 47810

---

>gb|DQ314493.1| Haloquadratum walsbyi clone 2B08 sequence
          Length = 38670

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 75   acacgtataaaattcaacaagct 97
            |||||||| ||||||||||||||
Sbjct: 6749 acacgtatcaaattcaacaagct 6771

---

>gb|AC151393.3| Atelerix albiventris clone LB4-130D24, complete sequence
          Length = 71468

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tgtctttcagaaatgcaaa 49
             |||||||||||||||||||
Sbjct: 31009 tgtctttcagaaatgcaaa 31027

---

>gb|AC156270.5| Mus musculus 10 BAC RP24-289H6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 163328

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    acattagatgcatttgtgt 33
             |||||||||||||||||||
Sbjct: 31716 acattagatgcatttgtgt 31734

---

>emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2525P14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 209242

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    atgcatttgtgtctttcag 40
             |||||||||||||||||||
Sbjct: 56066 atgcatttgtgtctttcag 56084

---

>emb|AL590387.7| Human DNA sequence from clone RP3-356B20 on chromosome 6, complete
             sequence
          Length = 76075

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    tcaaaagacacaatcaagt 117
             |||||||||||||||||||
Sbjct: 58348 tcaaaagacacaatcaagt 58366

---

>gb|AC161466.4| Gallus gallus BAC clone CH261-104N11 from chromosome ul, complete
             sequence
          Length = 189905

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    ttcaacaagctatcaaaag 105
             |||||||||||||||||||
Sbjct: 19137 ttcaacaagctatcaaaag 19155

---

>emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on chromosome 9, complete
             sequence
          Length = 162839

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    atcaaaagacacaatcaag 116
             |||||||||||||||||||
Sbjct: 11908 atcaaaagacacaatcaag 11890

---

>emb|AL805906.7| Mouse DNA sequence from clone RP23-113J20 on chromosome 4, complete
             sequence
          Length = 176416

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    agctatcaaaagacacaat 112
             |||||||||||||||||||
Sbjct: 47790 agctatcaaaagacacaat 47772


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,553,477
Number of Sequences: 3902068
Number of extensions: 1553477
Number of successful extensions: 115139
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114953
Number of HSP's gapped (non-prelim): 186
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

---