ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24b19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-type proton pump ATPase (Ha1) mRNA, complete cds Length = 3446 Score = 339 bits (171), Expect = 2e-90 Identities = 198/208 (95%), Gaps = 1/208 (0%) Strand = Plus / Minus Query: 1 actagttaggggaaagggtnaaacgattacaccacgcanaagctccaaacacggtataac 60 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 3305 actagttaggggaaagggtaaaacgattacaccacgccgt-gctccaaacacggtataac 3247 Query: 61 tccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggtag 120 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 3246 tccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggtag 3187 Query: 121 cactttacaactaggggctggtcagatcagccatgttnctttcattcatgcnccggaaaa 180 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 3186 cactttacaactaggggctggtcagatcagccatgtttctttcattcatgcaccggaaaa 3127 Query: 181 atcttaaagcggagctncattccaatct 208 |||||||||||||||| ||||||||||| Sbjct: 3126 atcttaaagcggagctccattccaatct 3099
>emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma membrane H+-ATPase (ha1 gene) Length = 2280 Score = 339 bits (171), Expect = 2e-90 Identities = 198/208 (95%), Gaps = 1/208 (0%) Strand = Plus / Minus Query: 1 actagttaggggaaagggtnaaacgattacaccacgcanaagctccaaacacggtataac 60 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 2162 actagttaggggaaagggtaaaacgattacaccacgccgt-gctccaaacacggtataac 2104 Query: 61 tccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggtag 120 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 2103 tccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggtag 2044 Query: 121 cactttacaactaggggctggtcagatcagccatgttnctttcattcatgcnccggaaaa 180 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 2043 cactttacaactaggggctggtcagatcagccatgtttctttcattcatgcaccggaaaa 1984 Query: 181 atcttaaagcggagctncattccaatct 208 |||||||||||||||| ||||||||||| Sbjct: 1983 atcttaaagcggagctccattccaatct 1956
>emb|Y09815.1|TAPSB5 T.aestivum mRNA for transmembrane proton pump, partial Length = 863 Score = 270 bits (136), Expect = 2e-69 Identities = 159/167 (95%), Gaps = 1/167 (0%) Strand = Plus / Minus Query: 42 gctccaaacacggtataactccactagaacattaaaacctntntagaagacgggacaacc 101 |||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| Sbjct: 808 gctccaaacacggtataactccactagaacattaaaacctctctagaagacggg-caacc 750 Query: 102 gaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatgttnctt 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 749 gaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatgtttgtt 690 Query: 162 tcattcatgcnccggaaaaatcttaaagcggagctncattccaatct 208 |||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct: 689 tcattcattcaccggaaaaatcttaaagcggagctccattccaatct 643
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 33498460 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 33498405 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 33498404 agcactttacaacta-gggctgttcagatcagccatgtt 33498367
>emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete sequence Length = 55574 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 12017 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 11962 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 11961 agcactttacaacta-gggctgttcagatcagccatgtt 11924
>dbj|AK105082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C08, full insert sequence Length = 2062 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 1926 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 1871 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 1870 agcactttacaacta-gggctgttcagatcagccatgtt 1833
>dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J16, full insert sequence Length = 3560 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 3371 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 3316 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 3315 agcactttacaacta-gggctgttcagatcagccatgtt 3278
>dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023L01, full insert sequence Length = 2444 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 2300 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 2245 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 2244 agcactttacaacta-gggctgttcagatcagccatgtt 2207
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence Length = 152264 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/99 (89%), Gaps = 5/99 (5%) Strand = Plus / Minus Query: 59 actccactagaacattaaaacctntntagaagacgggacaaccgaaaccatatatttggt 118 ||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||| Sbjct: 74749 actccactagaac-gtaaaacctctctagaaga-ggga-aaccg-gaccatatatttggt 74694 Query: 119 agcactttacaactaggggctggtcagatcagccatgtt 157 ||||||||||||||| |||||| |||||||||||||||| Sbjct: 74693 agcactttacaacta-gggctgttcagatcagccatgtt 74656
>emb|CR387983.8| Zebrafish DNA sequence from clone DKEY-90D6 in linkage group 21, complete sequence Length = 131428 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tttggtagcactttacaacta 133 ||||||||||||||||||||| Sbjct: 112529 tttggtagcactttacaacta 112509
>emb|BX005140.18| Zebrafish DNA sequence from clone CH211-11F22, complete sequence Length = 177312 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tttggtagcactttacaacta 133 ||||||||||||||||||||| Sbjct: 40685 tttggtagcactttacaacta 40705
>emb|BX548055.7| Zebrafish DNA sequence from clone CH211-246K22 in linkage group 20, complete sequence Length = 105935 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 catatatttggtagcacttta 127 ||||||||||||||||||||| Sbjct: 100126 catatatttggtagcacttta 100146
>emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in linkage group 20, complete sequence Length = 165729 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tatttggtagcactttacaa 130 |||||||||||||||||||| Sbjct: 127450 tatttggtagcactttacaa 127431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,014,114 Number of Sequences: 3902068 Number of extensions: 1014114 Number of successful extensions: 61476 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61422 Number of HSP's gapped (non-prelim): 45 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
