ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_455623.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11979g ... 42 0.68
2emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.68
3gb|AF023920.1|AF023920 Kluyveromyces lactis pyruvate dehydrogena... 42 0.68
4emb|AL035470.10|HS480J14 Human DNA sequence from clone RP3-480J1... 40 2.7
5dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 2.7
6emb|CR847999.10| Zebrafish DNA sequence from clone DKEY-216M6 in... 40 2.7

>ref|XM_455623.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11979g predicted mRNA
          Length = 1716

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 73 accaacaattgagaaatatag 93
          |||||||||||||||||||||
Sbjct: 66 accaacaattgagaaatatag 86



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 73      accaacaattgagaaatatag 93
               |||||||||||||||||||||
Sbjct: 1100356 accaacaattgagaaatatag 1100336



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>gb|AF023920.1|AF023920 Kluyveromyces lactis pyruvate dehydrogenase complex E1-alpha
           subunit (PDA1) gene, complete cds
          Length = 4844

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 73  accaacaattgagaaatatag 93
           |||||||||||||||||||||
Sbjct: 905 accaacaattgagaaatatag 885



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>emb|AL035470.10|HS480J14 Human DNA sequence from clone RP3-480J14 on chromosome 6q22.2-23.1
             Contains the 3' end of the PTPRK gene for protein tyrosine
             phosphatase receptor type K (R-PTP-KAPPA) and the 5' end
             of the C6orf190 gene, complete sequence
          Length = 105468

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   caaaactagaagacaagaag 154
             ||||||||||||||||||||
Sbjct: 89967 caaaactagaagacaagaag 89948



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      aagtttggggctacacgccc 44
               ||||||||||||||||||||
Sbjct: 2831807 aagtttggggctacacgccc 2831826



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>emb|CR847999.10| Zebrafish DNA sequence from clone DKEY-216M6 in linkage group 11,
             complete sequence
          Length = 192191

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    cataacaaactgaccaacaattga 84
             |||||||||||||||| |||||||
Sbjct: 59580 cataacaaactgaccagcaattga 59557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,591,576
Number of Sequences: 3902068
Number of extensions: 1591576
Number of successful extensions: 103177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103122
Number of HSP's gapped (non-prelim): 55
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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