ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24b17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B17, full insert sequence Length = 1272 Score = 293 bits (148), Expect = 4e-76 Identities = 300/351 (85%) Strand = Plus / Minus Query: 309 cacatattcttgtattccgtgctctccttgaataatttgaagtcgtcaattgatggaaaa 368 ||||||| |||||||||| | | |||| |||||| |||||||| |||| ||| |||||| Sbjct: 904 cacatatccttgtattccatcccctccctgaatatcttgaagtcatcaaatgacggaaaa 845 Query: 369 cggataactgcagcgtgactgtacagactatccatatgatccagacagcagcctgaggtt 428 |||||||||||||| |||||||| ||| |||||||||| ||||||||||||| ||||| Sbjct: 844 cggataactgcagcatgactgtaaccactgtccatatgattcagacagcagcctaaggtt 785 Query: 429 gcctgaacaatgaaagaactgtagtagatgatcagcttttgaagatgggccaatgcatcc 488 ||||||||||||||||||||| | | |||| | | | |||||| || ||||||||| Sbjct: 784 gcctgaacaatgaaagaactgcattgactgatgaacctctgaagagaagctaatgcatcc 725 Query: 489 tccacagactctctggatgcagtctccaagaaggatatcaacatcataaactctactccg 548 ||||| || |||| |||||| | |||||||| ||||||| | ||| ||||| ||||| Sbjct: 724 tccactgaatctccagatgcactttccaagaaagatatcagtagcatgaactccactcca 665 Query: 549 tagttaaaatcctcgcccctccgaaagagagggataatgtcatcttccacctcanattca 608 |||||||||||||| |||| || ||||||||||||||||||||||| |||||| ||||| Sbjct: 664 tagttaaaatcctctccccgacggaagagagggataatgtcatcttcaacctcagattca 605 Query: 609 aaatctacagaaaccaagccatatgaaacgggttttacgtgctcgtcgaga 659 ||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 604 aaatctacagaaaccgagccatatgaaacgggttttacgtgctcatcgaga 554
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 3e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 573 aagagagggataatgtcatcttccacctcanattcaaaatctacagaaaccaagcc 628 ||||||||||||||||||||||| || ||| |||||||||||||||||||| |||| Sbjct: 616259 aagagagggataatgtcatcttcaacttcagattcaaaatctacagaaaccgagcc 616204 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 363 ggaaaacggataactgcagcgtgactgtacagactatccatatgatccagacagcagcct 422 |||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 616683 ggaaaacggataactgcagcatgactgtaaccactgtccatatgattcagacagcagcct 616624 Query: 423 g 423 | Sbjct: 616623 g 616623 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 424 aggttgcctgaacaatgaaagaactgtagtagatgatcagcttttgaagatgggccaatg 483 |||||||||||||||||||||||||| | | |||| | | | |||||| || |||| Sbjct: 616517 aggttgcctgaacaatgaaagaactgcattgactgatgaacctctgaagagaagctaatg 616458 Query: 484 catcctccacagactctctggatgcagtctccaagaaggatatcaacatcataaactcta 543 |||||||||| || |||| |||||| | |||||||| ||||||| | ||| ||||| | Sbjct: 616457 catcctccactgaatctccagatgcactttccaagaaagatatcagtagcatgaactcca 616398 Query: 544 ctccgtagttaaaatcct 561 |||| ||||||||||||| Sbjct: 616397 ctccatagttaaaatcct 616380 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 628 catatgaaacgggttttacgtgctcgtcgaga 659 ||||||||||||||||||||||||| |||||| Sbjct: 616107 catatgaaacgggttttacgtgctcatcgaga 616076
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 3e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 573 aagagagggataatgtcatcttccacctcanattcaaaatctacagaaaccaagcc 628 ||||||||||||||||||||||| || ||| |||||||||||||||||||| |||| Sbjct: 616257 aagagagggataatgtcatcttcaacttcagattcaaaatctacagaaaccgagcc 616202 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 363 ggaaaacggataactgcagcgtgactgtacagactatccatatgatccagacagcagcct 422 |||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 616681 ggaaaacggataactgcagcatgactgtaaccactgtccatatgattcagacagcagcct 616622 Query: 423 g 423 | Sbjct: 616621 g 616621 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 424 aggttgcctgaacaatgaaagaactgtagtagatgatcagcttttgaagatgggccaatg 483 |||||||||||||||||||||||||| | | |||| | | | |||||| || |||| Sbjct: 616515 aggttgcctgaacaatgaaagaactgcattgactgatgaacctctgaagagaagctaatg 616456 Query: 484 catcctccacagactctctggatgcagtctccaagaaggatatcaacatcataaactcta 543 |||||||||| || |||| |||||| | |||||||| ||||||| | ||| ||||| | Sbjct: 616455 catcctccactgaatctccagatgcactttccaagaaagatatcagtagcatgaactcca 616396 Query: 544 ctccgtagttaaaatcct 561 |||| ||||||||||||| Sbjct: 616395 ctccatagttaaaatcct 616378 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 628 catatgaaacgggttttacgtgctcgtcgaga 659 ||||||||||||||||||||||||| |||||| Sbjct: 616105 catatgaaacgggttttacgtgctcatcgaga 616074
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 81.8 bits (41), Expect = 3e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 573 aagagagggataatgtcatcttccacctcanattcaaaatctacagaaaccaagcc 628 ||||||||||||||||||||||| || ||| |||||||||||||||||||| |||| Sbjct: 2140 aagagagggataatgtcatcttcaacttcagattcaaaatctacagaaaccgagcc 2085 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 363 ggaaaacggataactgcagcgtgactgtacagactatccatatgatccagacagcagcct 422 |||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 2564 ggaaaacggataactgcagcatgactgtaaccactgtccatatgattcagacagcagcct 2505 Query: 423 g 423 | Sbjct: 2504 g 2504 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 424 aggttgcctgaacaatgaaagaactgtagtagatgatcagcttttgaagatgggccaatg 483 |||||||||||||||||||||||||| | | |||| | | | |||||| || |||| Sbjct: 2398 aggttgcctgaacaatgaaagaactgcattgactgatgaacctctgaagagaagctaatg 2339 Query: 484 catcctccacagactctctggatgcagtctccaagaaggatatcaacatcataaactcta 543 |||||||||| || |||| |||||| | |||||||| ||||||| | ||| ||||| | Sbjct: 2338 catcctccactgaatctccagatgcactttccaagaaagatatcagtagcatgaactcca 2279 Query: 544 ctccgtagttaaaatcct 561 |||| ||||||||||||| Sbjct: 2278 ctccatagttaaaatcct 2261 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 628 catatgaaacgggttttacgtgctcgtcgaga 659 ||||||||||||||||||||||||| |||||| Sbjct: 1988 catatgaaacgggttttacgtgctcatcgaga 1957
>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21, complete sequence Length = 211164 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 616 cagaaaccaagccatatgaaac 637 |||||||||||||||||||||| Sbjct: 202105 cagaaaccaagccatatgaaac 202126
>gb|AY109654.1| Zea mays CL927_1 mRNA sequence Length = 821 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 628 catatgaaacgggttttacgtgctcgtcga 657 |||| |||||||| |||||||||||||||| Sbjct: 482 cataggaaacgggctttacgtgctcgtcga 453
>gb|AE017140.1| Yersinia pestis biovar Medievalis str. 91001 section 14 of 16 of the complete genome Length = 290393 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 aaagagagggataatgtcatc 592 ||||||||||||||||||||| Sbjct: 97569 aaagagagggataatgtcatc 97549
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 aaagagagggataatgtcatc 592 ||||||||||||||||||||| Sbjct: 3793943 aaagagagggataatgtcatc 3793923
>emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, complete sequence Length = 149672 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 atgatccagacagcagcctga 424 ||||||||||||||||||||| Sbjct: 10150 atgatccagacagcagcctga 10170
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 aaagagagggataatgtcatc 592 ||||||||||||||||||||| Sbjct: 3893399 aaagagagggataatgtcatc 3893419
>emb|AJ414144.1| Yersinia pestis strain CO92 complete genome; segment 4/20 Length = 208050 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 aaagagagggataatgtcatc 592 ||||||||||||||||||||| Sbjct: 135913 aaagagagggataatgtcatc 135933
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 26523429 tttcaggttcaggttcagagc 26523449 Score = 42.1 bits (21), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 ttatacacattncataccgtgctg 29 ||||||||||| |||||||||||| Sbjct: 11196645 ttatacacatttcataccgtgctg 11196668
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 cgacagggtcgacgacgaaat 264 ||||||||||||||||||||| Sbjct: 22250423 cgacagggtcgacgacgaaat 22250443
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 29209128 tttcaggttcaggttcagagc 29209108
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0070E11 Length = 142855 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 cgacagggtcgacgacgaaat 264 ||||||||||||||||||||| Sbjct: 70321 cgacagggtcgacgacgaaat 70341
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1215_E11 Length = 105301 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 76415 tttcaggttcaggttcagagc 76395
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 cgacagggtcgacgacgaaat 264 ||||||||||||||||||||| Sbjct: 12431 cgacagggtcgacgacgaaat 12451
>dbj|AK067950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127L15, full insert sequence Length = 1839 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 522 tttcaggttcaggttcagagc 502
>dbj|AK060648.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G12, full insert sequence Length = 1764 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 447 tttcaggttcaggttcagagc 427
>gb|AC151897.3| Mus musculus BAC clone RP24-257D11 from chromosome 7, complete sequence Length = 222313 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 cctgaacaatgaaagaactgt 450 ||||||||||||||||||||| Sbjct: 120172 cctgaacaatgaaagaactgt 120152
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 26451598 tttcaggttcaggttcagagc 26451618 Score = 42.1 bits (21), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 ttatacacattncataccgtgctg 29 ||||||||||| |||||||||||| Sbjct: 11196316 ttatacacatttcataccgtgctg 11196339
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tttcaggttcaggttcagagc 211 ||||||||||||||||||||| Sbjct: 18647 tttcaggttcaggttcagagc 18627
>emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108805 Score = 42.1 bits (21), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 ttatacacattncataccgtgctg 29 ||||||||||| |||||||||||| Sbjct: 60013 ttatacacatttcataccgtgctg 59990
>emb|AL929437.11| Mouse DNA sequence from clone RP23-74P16 on chromosome 2, complete sequence Length = 123971 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 ttcaggttcagagcacaaggg 218 ||||||||||||||||||||| Sbjct: 82317 ttcaggttcagagcacaaggg 82297
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 atgagcagaagatcacccaa 112 |||||||||||||||||||| Sbjct: 2450154 atgagcagaagatcacccaa 2450135
>ref|NM_188279.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2697 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 atttcaggttcaggttcaga 209 |||||||||||||||||||| Sbjct: 869 atttcaggttcaggttcaga 850
>gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 agggataatgtcatcttcca 597 |||||||||||||||||||| Sbjct: 48135 agggataatgtcatcttcca 48116
>ref|XM_461606.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G01870g) partial mRNA Length = 3351 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ctatttcaggttcaggttca 207 |||||||||||||||||||| Sbjct: 2944 ctatttcaggttcaggttca 2925
>gb|DQ226679.1| Boechera divaricarpa isolate SLW-348-443-E02 mRNA sequence Length = 563 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttctatttcaggttcaggttcaga 209 ||||| |||||||||||||||||| Sbjct: 294 ttctagttcaggttcaggttcaga 271
>emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chromosome 16, complete sequence Length = 202415 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 agggataatgtcatcttcca 597 |||||||||||||||||||| Sbjct: 11030 agggataatgtcatcttcca 11011
>gb|AC124441.5| Mus musculus BAC clone RP24-176L17 from chromosome 18, complete sequence Length = 190119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 cctgaacaatgaaagaactg 449 |||||||||||||||||||| Sbjct: 14929 cctgaacaatgaaagaactg 14910
>gb|AC124355.3| Mus musculus BAC clone RP24-483G17 from chromosome 18, complete sequence Length = 161461 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cctgaacaatgaaagaactg 449 |||||||||||||||||||| Sbjct: 12895 cctgaacaatgaaagaactg 12914
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttctatttcaggttcaggtt 205 |||||||||||||||||||| Sbjct: 825536 ttctatttcaggttcaggtt 825517
>emb|AL353683.7| Human DNA sequence from clone RP11-450P11 on chromosome 9 Contains part of the 5' UTR of a novel gene (FLJ31810), complete sequence Length = 198463 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 aaaatctacagaaaccaagc 627 |||||||||||||||||||| Sbjct: 166175 aaaatctacagaaaccaagc 166194
>emb|AL354827.5| Human DNA sequence from clone RP11-280J7 on chromosome 13, complete sequence Length = 127641 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 aagaaaaatagtaatgagat 136 |||||||||||||||||||| Sbjct: 36653 aagaaaaatagtaatgagat 36672
>emb|AL157360.8| Human DNA sequence from clone RP11-111C7 on chromosome 13, complete sequence Length = 148861 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 atgaaagaactgtagtagat 457 |||||||||||||||||||| Sbjct: 94657 atgaaagaactgtagtagat 94676
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ctatttcaggttcaggttca 207 |||||||||||||||||||| Sbjct: 125918 ctatttcaggttcaggttca 125937
>gb|AC108451.9| Homo sapiens chromosome 15, clone RP11-379K22, complete sequence Length = 198707 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 cagactctctggatgcagtc 512 |||||||||||||||||||| Sbjct: 115729 cagactctctggatgcagtc 115710
>emb|CR352243.7| Zebrafish DNA sequence from clone DKEYP-117H8 in linkage group 20 Contains the paics gene for phosphoribosylaminoimidazole carboxylase phosphoribosylaminoimidazole succinocarboxamide synthetase, the gene for a novel AMP-binding enzyme domain containing protein, the gene for a novel protein similar to vertebrate phosphoribosyl pyrophosphate amidotransferase (PPAT), the 3' end of the gene for a novel protein similar to cytochrome P450 family 2 subfamily J, the 5' end of a novel gene and two novel genes, complete sequence Length = 121253 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cgaaatgcagctcgagacat 278 |||||||||||||||||||| Sbjct: 20402 cgaaatgcagctcgagacat 20383
>gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complete sequence Length = 164781 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 576 agagggataatgtcatcttccacc 599 ||||| |||||||||||||||||| Sbjct: 113588 agaggaataatgtcatcttccacc 113565
>dbj|AK034574.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430009A01 product:zinc finger protein 288, full insert sequence Length = 3503 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 agggataatgtcatcttcca 597 |||||||||||||||||||| Sbjct: 1078 agggataatgtcatcttcca 1097
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 atttcaggttcaggttcaga 209 |||||||||||||||||||| Sbjct: 5429280 atttcaggttcaggttcaga 5429299
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 atttcaggttcaggttcaga 209 |||||||||||||||||||| Sbjct: 26120 atttcaggttcaggttcaga 26139
>gb|AC154408.2| Mus musculus BAC clone RP24-259A5 from 16, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 agggataatgtcatcttcca 597 |||||||||||||||||||| Sbjct: 155807 agggataatgtcatcttcca 155788
>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 tgtcaaggttctatttcagg 197 |||||||||||||||||||| Sbjct: 42036 tgtcaaggttctatttcagg 42055
>gb|AC132434.3| Mus musculus BAC clone RP23-221F13 from 12, complete sequence Length = 203897 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 cctgaacaatgaaagaactg 449 |||||||||||||||||||| Sbjct: 78965 cctgaacaatgaaagaactg 78946
>emb|AL929405.8| Mouse DNA sequence from clone RP24-323B22 on chromosome 4, complete sequence Length = 118016 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 cctgaacaatgaaagaactg 449 |||||||||||||||||||| Sbjct: 94696 cctgaacaatgaaagaactg 94677 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,011,208 Number of Sequences: 3902068 Number of extensions: 5011208 Number of successful extensions: 89049 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88668 Number of HSP's gapped (non-prelim): 381 length of query: 659 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 636 effective length of database: 17,143,297,704 effective search space: 10903137339744 effective search space used: 10903137339744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
