ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24b15 |
|---|---|
| Clone Library Name | barley_pub |
>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger| 1a) (OsCAX1a) Length = 451 Score = 90.9 bits (224), Expect = 1e-18 Identities = 43/55 (78%), Positives = 44/55 (80%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGXFXXCPNGS 265 VLVTAFTLQDGTSHYLKG+LLLLCYIVIGACFFV RQ HAN NG P GS Sbjct: 391 VLVTAFTLQDGTSHYLKGILLLLCYIVIGACFFVARQPAGHANSNGALLDVPTGS 445
>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger| 1b) (OsCAX1b) Length = 453 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/37 (70%), Positives = 32/37 (86%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQ 319 +LVTAFTLQ+G SHYLKG++L+LCY VI CFFV R+ Sbjct: 401 ILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRR 437
>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger| 2) (OsCAX2) Length = 437 Score = 51.6 bits (122), Expect = 9e-07 Identities = 21/34 (61%), Positives = 29/34 (85%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFV 328 VLV AF LQ+GTS+Y KG++L+LCY+++ A FFV Sbjct: 394 VLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFV 427
>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger| 3) (OsCAX3) Length = 417 Score = 51.6 bits (122), Expect = 9e-07 Identities = 21/34 (61%), Positives = 29/34 (85%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFV 328 VLV AF LQDG ++YLKG++L+LCY+++ A FFV Sbjct: 375 VLVVAFMLQDGVANYLKGLMLILCYLIVAASFFV 408
>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger| 1c) (OsCAX1c) Length = 450 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFVTR 322 V+ TAFTLQD HYLKG+ L+ YIVI CFFV + Sbjct: 405 VITTAFTLQDDKWHYLKGLNLVFSYIVIAVCFFVMK 440
>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)| exchanger 4) (OsCAX4) Length = 447 Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/34 (58%), Positives = 28/34 (82%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFFV 328 VLV AF LQDGTS+ +KG++L LCY+++ A F+V Sbjct: 399 VLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYV 432
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 31.6 bits (70), Expect = 0.99 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 7/42 (16%) Frame = -3 Query: 409 PPGWNVTLPQGSPPPP--MLHCYRRLL-----LCYETNRTSR 305 PPG LP G+PPPP + C LL LC NR +R Sbjct: 570 PPGVQPPLPPGAPPPPTCSIECLLCLLSSPNSLCLSPNRAAR 611
>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)| exchanger) (High copy number undoes manganese protein 1) (Manganese resistance 1 protein) Length = 411 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFF 331 V ++ + + DG S++L+GV+ L YI+I FF Sbjct: 364 VFLSNYLILDGESNWLEGVMSLAMYILIAMAFF 396
>DCNP1_HUMAN (Q8TF63) Dendritic cell nuclear protein 1| Length = 244 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 Query: 436 ISGASDGLHPPGWNVTLPQG 377 + G S+GL+PPG N TLP G Sbjct: 60 LQGLSEGLYPPGRNKTLPAG 79
>EMP1_RAT (P54848) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) Length = 160 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 414 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGXF 286 FT++ G +L G +L+C++ I V+ T H+A+ G F Sbjct: 87 FTMEKGNRFFLSGSTMLVCWLCI--LIGVSIYTHHYAHSEGNF 127
>EMP1_MOUSE (P47801) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) Length = 160 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 414 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGXF 286 FT++ G +L G +L+C++ I V+ T H+A+ G F Sbjct: 87 FTMEKGNRFFLSGSTMLVCWLCI--LVGVSIYTHHYAHSEGNF 127
>EMP1_RABIT (P54850) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) (Squamous cell-specific protein CL-20) Length = 160 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = -1 Query: 414 FTLQDGTSHYLKGVLLLLCY--IVIGACFFVTRQTEHHANGN 295 FT++ G +L G +L+C+ ++IGA + T +ANG+ Sbjct: 87 FTMEKGNRFFLSGATMLVCWLCVLIGASIY----THRYANGD 124
>EMP1_PONPY (Q5RCY3) Epithelial membrane protein 1 (EMP-1)| Length = 157 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 414 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNG 292 FT++ G +L G L+C++ I V+ T H+AN +G Sbjct: 87 FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDG 125
>EMP1_HUMAN (P54849) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) (CL-20) (B4B protein) Length = 157 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 414 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNG 292 FT++ G +L G L+C++ I V+ T H+AN +G Sbjct: 87 FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDG 125
>YN61_YEAST (P42839) Protein YNL321W| Length = 908 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 429 VLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFF 331 V + + +G S+Y KG +L+L YI+I F+ Sbjct: 869 VFMFTYLYAEGKSNYFKGSMLILLYIIIVVGFY 901
>YXX5_CAEEL (Q18179) Putative neuropeptide Y receptor (NPY-R)| Length = 455 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 133 SVMHIYDRHNLVXXGSNTSFSILHTXXLVEAXLLVISYA 249 +V HI++ LV S T+FSI H + A L + YA Sbjct: 288 NVFHIFNTFELVNSFSVTTFSICHCLAMCSACLNPLIYA 326 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,514,211 Number of Sequences: 219361 Number of extensions: 1037378 Number of successful extensions: 2754 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2569 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2747 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
