ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23m11 |
|---|---|
| Clone Library Name | barley_pub |
>PF11_PIG (P51524) Prophenin-1 precursor (PF-1) (C6) (Fragment)| Length = 212 Score = 38.5 bits (88), Expect = 0.023 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +2 Query: 101 KYQPESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQMGLFFCTEPSLRSRTFGPRPHFP 280 ++ P + PG P P PR P P P P P+ G +F P R FGP P FP Sbjct: 151 RFPPPNFPGPRFPPPNFPGPRFPPPNFPGPPFPPPIFPGPWFPPPPPFRPPPFGP-PRFP 209
>PF12_PIG (P51525) Prophenin-2 precursor (PF-2) (PR-2) (C12)| (Prophenin-1-like) Length = 228 Score = 38.5 bits (88), Expect = 0.023 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +2 Query: 101 KYQPESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQMGLFFCTEPSLRSRTFGPRPHFP 280 ++ P + PG P P PR P P P P P+ G +F P R FGP P FP Sbjct: 167 RFPPPNFPGPRFPPPNFPGPRFPPPNFPGPPFPPPIFPGPWFPPPPPFRPPPFGP-PRFP 225
>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1434 Score = 34.3 bits (77), Expect = 0.43 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 12/68 (17%) Frame = +2 Query: 110 PESGPGSYQFMPRSPS-----------PRKPATMVPTSPKPTPMQMGLFFCTEPSLRSRT 256 PES PG+ + S PR+PA VPT KPT + G +P L Sbjct: 1144 PESAPGAIPLRNQGSSKPEATLGPPALPRRPAPRVPTMKKPTLRRTG-----KPMLPEEN 1198 Query: 257 FGPRP-HF 277 F P+P HF Sbjct: 1199 FEPQPVHF 1206
>RIR1_HCMVA (P16782) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 906 Score = 33.1 bits (74), Expect = 0.95 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +3 Query: 456 TRRRSELPVQRSLGFEAL*WGKLCLQVVFEAQKWWHSGSF**L-PLH 593 TRR +L V R L EA+ WG L + A +WW + L PLH Sbjct: 625 TRRYFDLSVLRELVTEAVVWGNARLDALMSASEWWVESALEKLRPLH 671
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 33.1 bits (74), Expect = 0.95 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTP 205 P+ P +Y P+ P+ KP T PT PKPTP Sbjct: 205 PKPSPPTYTPTPKPPAT-KPPTSTPTHPKPTP 235 Score = 30.4 bits (67), Expect = 6.2 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +2 Query: 104 YQPESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQMGLFFCTEPSLRSRTFGPRP 271 ++PE P ++ P + +P T P +PKPTP + P +S + P P Sbjct: 58 HKPEKPPKEHKPTPPTYTPSPKPTPPPATPKPTPPT----YTPSPKPKSPVYPPPP 109
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 32.7 bits (73), Expect = 1.2 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQMG 217 P PGS + P+ P P KP+ P S KP Q G Sbjct: 446 PSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPG 481
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 32.7 bits (73), Expect = 1.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 101 KYQPESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQMGL 220 K QP+ P + P+ P+P KP PT KP P Q GL Sbjct: 423 KPQPQH-PTPAKPQPQQPTPAKPQPQQPTPAKPQPQQPGL 461 Score = 30.4 bits (67), Expect = 6.2 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 101 KYQPESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQ 211 K QP+ P + P+ P+P KP PT KP P Q Sbjct: 413 KPQPQQ-PAPAKPQPQHPTPAKPQPQQPTPAKPQPQQ 448 Score = 30.4 bits (67), Expect = 6.2 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTPMQ 211 P PG + P+ P P KP P + KP P Q Sbjct: 385 PAQQPGPTKPSPQQPIPAKPQPQQPVATKPQPQQ 418
>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated| protein 4.15) (Ultrahigh sulfur keratin-associated protein 4.15) (Fragment) Length = 193 Score = 32.0 bits (71), Expect = 2.1 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 354 PPSCICHPCRPQFCSALVFQQPQCWWQCTPSHLQT 458 P C+ CRPQ C ++ Q C C PS QT Sbjct: 26 PSCCVSSCCRPQCCQSVCCQPTCCRPSCCPSCCQT 60
>FLI1_XENLA (P41157) Retroviral integration site protein Fli-1 homolog| Length = 453 Score = 31.6 bits (70), Expect = 2.8 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +2 Query: 122 PGSYQFMPRSPSPRKPATMVPTSPKPTPM-QMGLFFCTEP--SLRSRTFGPRPHFPKH 286 P + +MP S ++ VP+ P P+ G F T P + S P P+ P+H Sbjct: 383 PSEFSYMPSYHSHQQKVNFVPSHPSSMPVTSSGFFGATSPYWNSPSANIYPNPNVPRH 440
>NO75_PEA (P16329) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 112 Score = 30.8 bits (68), Expect = 4.7 Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Frame = +2 Query: 95 SCKYQP--ESGPGSYQFMPRSPSPRKPATMVP----TSPKPTPMQMGLFFCTEPSLRSRT 256 S KYQP E P YQ P P + SP P LF P SR Sbjct: 44 SPKYQPPHEHSPPEYQPPHEKPPHENPPPVYKPPYENSPPPHVYHRPLFQAPPPVKPSRP 103 Query: 257 FGPRPHF 277 FGP P F Sbjct: 104 FGPFPAF 110
>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein| Length = 975 Score = 30.8 bits (68), Expect = 4.7 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +2 Query: 95 SCKYQPESGPGSY----QFMPRSPSPRKPATMVPTSPKPTP 205 +C + G SY Q P++P P P T PT+PK P Sbjct: 680 ACNFMQPLGGRSYKTLPQVSPKTPPPMAPKTPPPTTPKTPP 720
>HSP77_HUMAN (P48741) Heat shock 70 kDa protein 7 (Heat shock 70 kDa protein B)| (Fragment) Length = 247 Score = 30.4 bits (67), Expect = 6.2 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 340 DGKRARLLAFATHADLNSVQHWFFNNRNAGGSALRRICRPGEDLSF 477 D KR FA + ++HW F + GG R+C GED +F Sbjct: 71 DAKRLIGRKFADTTVQSDMKHWPFKVVSGGGKPKVRVCYRGEDKTF 116
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +3 Query: 354 PPSCICHPCRPQFCSALVFQQPQCWWQCTPSHLQT 458 P C+ CRPQ C + V QP C C+PS QT Sbjct: 38 PSCCVSSCCRPQCCQS-VCCQPTC---CSPSCCQT 68
>YBV8_YEAST (P38266) Protein YBR108W| Length = 947 Score = 30.0 bits (66), Expect = 8.0 Identities = 19/45 (42%), Positives = 21/45 (46%) Frame = +2 Query: 143 PRSPSPRKPATMVPTSPKPTPMQMGLFFCTEPSLRSRTFGPRPHF 277 P P P M P P+P MQ G + EPSL S G PHF Sbjct: 377 PVGGQPPVPVRMQPQPPQP--MQQGNIYPIEPSLDST--GSTPHF 417
>GMHB_HELPY (O25531) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 173 Score = 30.0 bits (66), Expect = 8.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 463 EDLSFQCNGVWDLRHYDGENCACR 534 ++L F +G++ RH ENCACR Sbjct: 80 KELGFNLDGIYFCRHAPEENCACR 103
>GMHB_HELPJ (Q9ZKY8) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 174 Score = 30.0 bits (66), Expect = 8.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 463 EDLSFQCNGVWDLRHYDGENCACR 534 ++L F +G++ RH ENCACR Sbjct: 81 KELGFNLDGIYFCRHAPEENCACR 104
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTP 205 P+ P +Y +PSP+ PAT PT PKPTP Sbjct: 208 PKPTPPTY-----TPSPKPPATKPPT-PKPTP 233 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTP 205 P+ P +Y +PSP+ PAT PT PKPTP Sbjct: 104 PKPTPPTY-----TPSPKPPATKPPT-PKPTP 129 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATMVPTSPKPTP 205 P+ P +Y +PSP+ PAT PT PKPTP Sbjct: 67 PKPTPPTY-----TPSPKPPATKPPT-PKPTP 92
>HSP76_HUMAN (P17066) Heat shock 70 kDa protein 6 (Heat shock 70 kDa protein B')| Length = 643 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 340 DGKRARLLAFATHADLNSVQHWFFNNRNAGGSALRRICRPGEDLSF 477 D KR FA + ++HW F + GG R+C GED +F Sbjct: 71 DAKRLIGRKFADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTF 116
>FNDC3_HUMAN (Q9Y2H6) Fibronectin type-III domain-containing protein 3a| Length = 1134 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +2 Query: 110 PESGPGSYQFMPRSPSPRKPATM-VPTSPKPTPMQM 214 PE PGS+ + RSP P P + VPT P P M Sbjct: 37 PEFHPGSHTVLHRSPHPPLPGFIPVPTMMPPPPRHM 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,092,575 Number of Sequences: 219361 Number of extensions: 2268227 Number of successful extensions: 8058 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7932 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7932903580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
